Conservation of cofitness between HSERO_RS03350 and HSERO_RS09290 in Herbaspirillum seropedicae SmR1

90 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS03350 hypothetical protein 1.0 HSERO_RS09290 ribonuclease R 0.31 5
Ralstonia sp. UNC404CL21Col 0.74 ABZR87_RS08070 pyruvate kinase 0.65 ABZR87_RS10985 ribonuclease R low > 80
Burkholderia phytofirmans PsJN 0.73 BPHYT_RS16265 hypothetical protein 0.67 BPHYT_RS08455 ribonuclease R low > 109
Paraburkholderia bryophila 376MFSha3.1 0.73 H281DRAFT_04189 pyruvate kinase 0.67 H281DRAFT_00712 RNAse R low > 103
Paraburkholderia graminis OAS925 0.73 ABIE53_003427 pyruvate kinase 0.68 ABIE53_001940 ribonuclease R low > 113
Ralstonia solanacearum PSI07 0.73 RPSI07_RS21150 pyruvate kinase 0.67 RPSI07_RS18030 ribonuclease R low > 81
Ralstonia solanacearum GMI1000 0.72 RS_RS02865 pyruvate kinase 0.67 RS_RS06155 ribonuclease R 0.68 20
Ralstonia solanacearum UW163 0.72 UW163_RS01430 pyruvate kinase 0.66 UW163_RS12810 ribonuclease R — —
Paraburkholderia sabiae LMG 24235 0.72 QEN71_RS02430 pyruvate kinase 0.68 QEN71_RS22925 ribonuclease R low > 153
Ralstonia solanacearum IBSBF1503 0.72 RALBFv3_RS12180 pyruvate kinase 0.66 RALBFv3_RS15345 ribonuclease R low > 76
Cupriavidus basilensis FW507-4G11 0.72 RR42_RS03210 pyruvate kinase 0.68 RR42_RS13065 ribonuclease R 0.39 20
Hydrogenophaga sp. GW460-11-11-14-LB1 0.67 GFF2780 Pyruvate kinase (EC 2.7.1.40) 0.50 GFF4921 3'-to-5' exoribonuclease RNase R low > 90
Acidovorax sp. GW101-3H11 0.67 Ac3H11_654 Pyruvate kinase (EC 2.7.1.40) 0.52 Ac3H11_412 3'-to-5' exoribonuclease RNase R low > 79
Dechlorosoma suillum PS 0.66 Dsui_0052 pyruvate kinase 0.50 Dsui_3128 ribonuclease R low > 51
Variovorax sp. SCN45 0.66 GFF5504 Pyruvate kinase (EC 2.7.1.40) 0.51 GFF399 3'-to-5' exoribonuclease RNase R low > 127
Variovorax sp. OAS795 0.65 ABID97_RS01755 pyruvate kinase 0.51 ABID97_RS17200 ribonuclease R 0.39 72
Castellaniella sp019104865 MT123 0.48 ABCV34_RS02525 pyruvate kinase 0.50 ABCV34_RS06625 ribonuclease R low > 48
Pseudomonas putida KT2440 0.48 PP_1362 pyruvate kinase II 0.43 PP_4880 exoribonuclease R low > 96
Kangiella aquimarina DSM 16071 0.48 B158DRAFT_1404 pyruvate kinase 0.41 B158DRAFT_1989 ribonuclease R low > 40
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_03775 pyruvate kinase 0.44 AO353_13200 exoribonuclease R low > 101
Pseudomonas fluorescens FW300-N1B4 0.47 Pf1N1B4_678 Pyruvate kinase (EC 2.7.1.40) 0.44 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R low > 87
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_4029 pyruvate kinase 0.44 Psyr_0579 RNAse R low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_4029 pyruvate kinase 0.44 Psyr_0579 RNAse R low > 86
Pseudomonas fluorescens FW300-N2C3 0.47 AO356_17830 pyruvate kinase 0.45 AO356_08610 exoribonuclease R low > 104
Pseudomonas fluorescens SBW25 0.47 PFLU_RS24255 pyruvate kinase 0.45 PFLU_RS02625 ribonuclease R low > 109
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS24255 pyruvate kinase 0.45 PFLU_RS02625 ribonuclease R low > 109
Pseudomonas simiae WCS417 0.47 PS417_22620 pyruvate kinase 0.45 PS417_02555 exoribonuclease R low > 88
Pseudomonas fluorescens FW300-N2E2 0.47 Pf6N2E2_5494 Pyruvate kinase (EC 2.7.1.40) 0.45 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R low > 103
Pseudomonas fluorescens GW456-L13 0.47 PfGW456L13_1813 Pyruvate kinase (EC 2.7.1.40) 0.44 PfGW456L13_144 3'-to-5' exoribonuclease RNase R low > 87
Pseudomonas stutzeri RCH2 0.47 Psest_3190 pyruvate kinase 0.43 Psest_0691 ribonuclease R low > 67
Shewanella loihica PV-4 0.47 Shew_2050 pyruvate kinase (RefSeq) 0.42 Shew_3289 ribonuclease R (RefSeq) — —
Pseudomonas sp. RS175 0.46 PFR28_03455 Pyruvate kinase II 0.44 PFR28_05130 Ribonuclease R low > 88
Dickeya dianthicola ME23 0.46 DZA65_RS10570 pyruvate kinase 0.37 DZA65_RS18405 ribonuclease R low > 75
Dickeya dianthicola 67-19 0.46 HGI48_RS10155 pyruvate kinase 0.38 HGI48_RS17315 ribonuclease R low > 71
Vibrio cholerae E7946 ATCC 55056 0.46 CSW01_10025 pyruvate kinase 0.39 CSW01_13155 ribonuclease R low > 62
Dickeya dadantii 3937 0.46 DDA3937_RS10125 pyruvate kinase 0.37 DDA3937_RS17260 ribonuclease R low > 74
Shewanella sp. ANA-3 0.46 Shewana3_2153 pyruvate kinase (RefSeq) 0.42 Shewana3_0697 RNAse R (RefSeq) low > 73
Shewanella oneidensis MR-1 0.46 SO2491 pykA pyruvate kinase II (NCBI ptt file) 0.41 SO3935 vacB ribonuclease R (NCBI ptt file) low > 76
Pectobacterium carotovorum WPP14 0.46 HER17_RS11790 pyruvate kinase 0.38 HER17_RS03835 ribonuclease R low > 75
Escherichia coli ECOR38 0.45 HEPCGN_04725 pyk pyruvate kinase 0.39 HEPCGN_10450 rnr ribonuclease R low > 87
Escherichia fergusonii Becca 0.45 EFB2_02088 Pyruvate kinase II 0.39 EFB2_04356 Ribonuclease R 0.27 76
Escherichia coli Nissle 1917 0.45 ECOLIN_RS10330 pyruvate kinase 0.39 ECOLIN_RS24265 ribonuclease R low > 55
Rahnella sp. WP5 0.45 EX31_RS10640 pyruvate kinase 0.38 EX31_RS08785 ribonuclease R low > 89
Shewanella amazonensis SB2B 0.45 Sama_1814 pyruvate kinase (RefSeq) 0.40 Sama_3067 exoribonuclease II (RefSeq) low > 62
Escherichia coli BW25113 0.45 b1854 pykA pyruvate kinase (NCBI) 0.39 b4179 vacB putative enzyme (VIMSS) 0.25 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.45 OHPLBJKB_01874 Pyruvate kinase II 0.39 OHPLBJKB_03863 Ribonuclease R low > 73
Pseudomonas sp. S08-1 0.45 OH686_18800 pyruvate kinase 0.43 OH686_15910 ribonuclease R low > 80
Escherichia coli BL21 0.45 ECD_01825 pyruvate kinase II 0.39 ECD_04046 exoribonuclease R, RNase R 0.57 20
Escherichia coli ECRC62 0.45 BNILDI_15630 pyk pyruvate kinase 0.39 BNILDI_07005 rnr ribonuclease R low > 75
Escherichia coli ECOR27 0.45 NOLOHH_16835 pyk pyruvate kinase 0.39 NOLOHH_04485 rnr ribonuclease R low > 75
Escherichia coli ECRC102 0.45 NIAGMN_01740 pyk pyruvate kinase 0.39 NIAGMN_10070 rnr ribonuclease R — —
Escherichia coli ECRC100 0.45 OKFHMN_26320 pyk pyruvate kinase 0.39 OKFHMN_12220 rnr ribonuclease R low > 80
Escherichia coli ECRC101 0.45 MCAODC_19085 pyk pyruvate kinase 0.39 MCAODC_02735 rnr ribonuclease R low > 87
Escherichia coli ECRC99 0.45 KEDOAH_01785 pyk pyruvate kinase 0.39 KEDOAH_15935 rnr ribonuclease R — —
Escherichia coli ECRC98 0.45 JDDGAC_00895 pyk pyruvate kinase 0.39 JDDGAC_15860 rnr ribonuclease R low > 86
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_01070 pyk pyruvate kinase 0.36 OKGIIK_06755 rnr ribonuclease R low > 52
Erwinia tracheiphila SCR3 0.45 LU632_RS13370 pyk pyruvate kinase 0.38 LU632_RS21750 rnr ribonuclease R low > 74
Pantoea sp. MT58 0.45 IAI47_08485 pyruvate kinase 0.39 IAI47_02625 ribonuclease R low > 76
Alteromonas macleodii MIT1002 0.45 MIT1002_02409 Pyruvate kinase II 0.38 MIT1002_03606 Ribonuclease R — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.45 GFF1633 Pyruvate kinase (EC 2.7.1.40) 0.39 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 0.79 19
Serratia liquefaciens MT49 0.45 IAI46_14585 pyruvate kinase 0.37 IAI46_01660 ribonuclease R low > 86
Enterobacter sp. TBS_079 0.44 MPMX20_02759 Pyruvate kinase II 0.38 MPMX20_00460 Ribonuclease R low > 85
Enterobacter asburiae PDN3 0.44 EX28DRAFT_0702 pyruvate kinase 0.39 EX28DRAFT_3376 ribonuclease R low > 76
Klebsiella michiganensis M5al 0.44 BWI76_RS18115 pyruvate kinase 0.39 BWI76_RS02575 exoribonuclease R low > 92
Marinobacter adhaerens HP15 0.43 HP15_2176 pyruvate kinase II 0.41 HP15_622 exoribonuclease R low > 73
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS18630 pyruvate kinase 0.36 ABZR86_RS08270 ribonuclease R low > 74
Lysobacter sp. OAE881 0.40 ABIE51_RS17040 pyruvate kinase 0.36 ABIE51_RS07475 ribonuclease R low > 62
Xanthomonas campestris pv. campestris strain 8004 0.40 Xcc-8004.1243.1 Pyruvate kinase (EC 2.7.1.40) 0.35 Xcc-8004.3370.1 3'-to-5' exoribonuclease RNase R low > 74
Magnetospirillum magneticum AMB-1 0.33 AMB_RS16010 pyruvate kinase 0.22 AMB_RS04465 ribonuclease R — —
Rhodopseudomonas palustris CGA009 0.33 TX73_021735 pyruvate kinase 0.20 TX73_016160 ribonuclease R — —
Sphingomonas koreensis DSMZ 15582 0.33 Ga0059261_0685 pyruvate kinase 0.18 Ga0059261_3266 ribonuclease R low > 68
Dinoroseobacter shibae DFL-12 0.32 Dshi_0228 pyruvate kinase (RefSeq) 0.18 Dshi_0015 ribonuclease R (RefSeq) — —
Fusobacterium nucleatum SB010 0.32 HUW76_00910 pyruvate kinase PykF 0.18 HUW76_06085 ribonuclease R — —
Phaeobacter inhibens DSM 17395 0.31 PGA1_c06970 pyruvate kinase PykA 0.19 PGA1_c36430 putative ribonuclease R — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.31 ABZR88_RS01590 pyruvate kinase 0.21 ABZR88_RS04270 ribonuclease R — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.31 Echvi_2317 pyruvate kinase 0.21 Echvi_0669 ribonuclease R — —
Sinorhizobium meliloti 1021 0.31 SMc04005 pyruvate kinase 0.21 SMc01365 exoribonuclease II protein low > 103
Rhodospirillum rubrum S1H 0.31 Rru_A2465 Pyruvate kinase (NCBI) 0.22 Rru_A3203 ribonuclease R (NCBI) — —
Pedobacter sp. GW460-11-11-14-LB5 0.30 CA265_RS18740 pyruvate kinase 0.22 CA265_RS10530 ribonuclease R — —
Agrobacterium fabrum C58 0.30 Atu3762 pyruvate kinase 0.21 Atu1303 exoribonuclease — —
Rhizobium sp. OAE497 0.29 ABIE40_RS16145 pyruvate kinase 0.21 ABIE40_RS07350 ribonuclease R — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.29 CA264_00725 pyruvate kinase 0.20 CA264_17355 ribonuclease R low > 74
Caulobacter crescentus NA1000 0.28 CCNA_02130 pyruvate kinase 0.20 CCNA_02537 ribonuclease R low > 66
Caulobacter crescentus NA1000 Δfur 0.28 CCNA_02130 pyruvate kinase 0.20 CCNA_02537 ribonuclease R low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.27 A4249_RS02440 pyruvate kinase 0.20 A4249_RS08325 ribonuclease R — —
Phocaeicola vulgatus CL09T03C04 0.22 HMPREF1058_RS09670 pyruvate kinase 0.21 HMPREF1058_RS10970 ribonuclease R — —
Phocaeicola dorei CL03T12C01 0.22 ABI39_RS07010 pyruvate kinase 0.22 ABI39_RS06100 ribonuclease R low > 72
Bacteroides thetaiotaomicron VPI-5482 0.21 BT2841 pyruvate kinase (NCBI ptt file) 0.21 BT3077 ribonuclease R (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.21 BACOVA_02121 pyruvate kinase 0.21 BACOVA_02736 ribonuclease R — —
Bacteroides stercoris CC31F 0.21 HMPREF1181_RS01240 pyruvate kinase 0.21 HMPREF1181_RS01550 ribonuclease R low > 56
Parabacteroides merdae CL09T00C40 0.21 HMPREF1078_RS04695 pyruvate kinase 0.20 HMPREF1078_RS05885 ribonuclease R low > 61

Not shown: 11 genomes with orthologs for HSERO_RS03350 only; 2 genomes with orthologs for HSERO_RS09290 only