Conservation of cofitness between HSERO_RS05455 and HSERO_RS02260 in Herbaspirillum seropedicae SmR1

87 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS05455 gamma-glutamyltranspeptidase 1.0 HSERO_RS02260 DNA polymerase I 0.46 2
Azospirillum sp. SherDot2 0.72 MPMX19_05752 Glutathione hydrolase proenzyme 0.36 MPMX19_04869 DNA polymerase I low > 112
Acidovorax sp. GW101-3H11 0.68 Ac3H11_1090 Gamma-glutamyltranspeptidase (EC 2.3.2.2) 0.60 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) — —
Castellaniella sp019104865 MT123 0.65 ABCV34_RS11415 gamma-glutamyltransferase 0.58 ABCV34_RS02195 DNA polymerase I low > 48
Klebsiella michiganensis M5al 0.59 BWI76_RS26275 gamma-glutamyltransferase 0.51 BWI76_RS00355 DNA polymerase I low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF561 Gamma-glutamyltranspeptidase (EC 2.3.2.2) 0.51 GFF2216 DNA polymerase I (EC 2.7.7.7) low > 78
Escherichia coli ECOR38 0.58 HEPCGN_15620 ggt gamma-glutamyltransferase 0.52 HEPCGN_12785 polA DNA polymerase I — —
Shewanella amazonensis SB2B 0.58 Sama_1566 gamma-glutamyltransferase (RefSeq) 0.52 Sama_0093 DNA-directed DNA polymerase (RefSeq) low > 62
Escherichia fergusonii Becca 0.58 EFB2_00375 Glutathione hydrolase proenzyme 0.52 EFB2_04753 DNA polymerase I — —
Escherichia coli ECRC98 0.58 JDDGAC_20430 ggt gamma-glutamyltransferase 0.52 JDDGAC_17775 polA DNA polymerase I — —
Escherichia coli ECRC100 0.58 OKFHMN_16800 ggt gamma-glutamyltransferase 0.52 OKFHMN_14150 polA DNA polymerase I — —
Escherichia coli ECRC102 0.58 NIAGMN_14570 ggt gamma-glutamyltransferase 0.52 NIAGMN_11905 polA DNA polymerase I — —
Escherichia coli ECRC99 0.58 KEDOAH_11340 ggt gamma-glutamyltransferase 0.52 KEDOAH_14000 polA DNA polymerase I — —
Escherichia coli Nissle 1917 0.58 ECOLIN_RS19715 gamma-glutamyltransferase 0.52 ECOLIN_RS22270 DNA polymerase I — —
Escherichia coli ECRC62 0.58 BNILDI_02915 ggt gamma-glutamyltransferase 0.51 BNILDI_05250 polA DNA polymerase I — —
Escherichia coli ECOR27 0.58 NOLOHH_08590 ggt gamma-glutamyltransferase 0.52 NOLOHH_06280 polA DNA polymerase I — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.58 OHPLBJKB_00256 Glutathione hydrolase proenzyme 0.51 OHPLBJKB_04189 DNA polymerase I — —
Escherichia coli BW25113 0.58 b3447 ggt gamma-glutamyltranspeptidase periplasmic precursor (NCBI) 0.52 b3863 polA DNA polymerase I (NCBI) low > 76
Escherichia coli ECRC101 0.58 MCAODC_07330 ggt gamma-glutamyltransferase 0.52 MCAODC_04650 polA DNA polymerase I — —
Enterobacter asburiae PDN3 0.58 EX28DRAFT_4279 gamma-glutamyltranspeptidase 0.51 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) — —
Escherichia coli BL21 0.58 ECD_03296 gamma-glutamyltranspeptidase 0.52 ECD_03749 5 — —
Shewanella loihica PV-4 0.57 Shew_2158 gamma-glutamyltransferase (RefSeq) 0.51 Shew_3714 DNA polymerase I (RefSeq) low > 60
Enterobacter sp. TBS_079 0.57 MPMX20_04323 Glutathione hydrolase proenzyme 0.51 MPMX20_04601 DNA polymerase I low > 85
Erwinia tracheiphila SCR3 0.56 LU632_RS19180 ggt gamma-glutamyltransferase 0.51 LU632_RS23870 polA DNA polymerase I — —
Pantoea sp. MT58 0.56 IAI47_01620 gamma-glutamyltransferase 0.52 IAI47_00430 DNA polymerase I low > 76
Rhodospirillum rubrum S1H 0.56 Rru_A0385 Gamma-glutamyltransferase (NCBI) 0.35 Rru_A3514 DNA polymerase A (NCBI) — —
Shewanella oneidensis MR-1 0.56 SO1952 ggt-2 gamma-glutamyltranspeptidase (NCBI ptt file) 0.52 SO4669 polA DNA polymerase I (NCBI ptt file) — —
Shewanella sp. ANA-3 0.55 Shewana3_2487 gamma-glutamyltransferase 1 (RefSeq) 0.53 Shewana3_4109 DNA polymerase I (RefSeq) — —
Marinobacter adhaerens HP15 0.52 HP15_1357 gamma-glutamyltranspeptidase periplasmic precursor 0.50 HP15_293 DNA polymerase I low > 73
Kangiella aquimarina DSM 16071 0.52 B158DRAFT_2377 gamma-glutamyltranspeptidase 0.55 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) low > 40
Ralstonia solanacearum PSI07 0.45 RPSI07_RS01100 gamma-glutamyltransferase 0.71 RPSI07_RS13480 DNA polymerase I low > 81
Ralstonia sp. UNC404CL21Col 0.45 ABZR87_RS19795 gamma-glutamyltransferase 0.70 ABZR87_RS15680 DNA polymerase I 0.48 4
Serratia liquefaciens MT49 0.45 IAI46_04820 gamma-glutamyltransferase 0.53 IAI46_24985 DNA polymerase I low > 86
Sinorhizobium meliloti 1021 0.45 SM_b20585 gamma-glutamyltranspeptidase 0.36 SMc02850 DNA polymerase I low > 103
Variovorax sp. OAS795 0.45 ABID97_RS09895 gamma-glutamyltransferase 0.62 ABID97_RS09180 DNA polymerase I 0.39 16
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_0691 gamma-glutamyltransferase 1, Threonine peptidase, MEROPS family T03 0.50 Psyr_0270 DNA polymerase I low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_0691 gamma-glutamyltransferase 1, Threonine peptidase, MEROPS family T03 0.50 Psyr_0270 DNA polymerase I low > 86
Rhizobium sp. OAE497 0.45 ABIE40_RS16090 gamma-glutamyltransferase 0.37 ABIE40_RS00490 DNA polymerase I low > 107
Rhodopseudomonas palustris CGA009 0.45 TX73_000130 gamma-glutamyltransferase 0.34 TX73_024545 DNA polymerase I low > 86
Pseudomonas fluorescens SBW25 0.45 PFLU_RS13685 gamma-glutamyltransferase 0.50 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS13685 gamma-glutamyltransferase 0.50 PFLU_RS00395 DNA polymerase I low > 109
Ralstonia solanacearum GMI1000 0.45 RS_RS18475 gamma-glutamyltransferase 0.71 RS_RS11195 DNA polymerase I low > 80
Dickeya dianthicola ME23 0.45 DZA65_RS14700 gamma-glutamyltransferase 0.50 DZA65_RS22235 DNA polymerase I — —
Rahnella sp. WP5 0.45 EX31_RS22075 gamma-glutamyltransferase 0.52 EX31_RS15905 DNA polymerase I low > 89
Ralstonia solanacearum UW163 0.45 UW163_RS22625 gamma-glutamyltransferase 0.70 UW163_RS09920 DNA polymerase I — —
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS22085 gamma-glutamyltransferase 0.70 RALBFv3_RS03750 DNA polymerase I low > 76
Pseudomonas simiae WCS417 0.45 PS417_13045 gamma-glutamyltranspeptidase 0.51 PS417_00405 DNA polymerase I low > 88
Pseudomonas fluorescens GW456-L13 0.44 PfGW456L13_2671 Gamma-glutamyltranspeptidase (EC 2.3.2.2) 0.49 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) 0.28 41
Variovorax sp. SCN45 0.44 GFF3077 Gamma-glutamyltranspeptidase (EC 2.3.2.2) @ Glutathione hydrolase (EC 3.4.19.13) 0.62 GFF4006 DNA polymerase I (EC 2.7.7.7) low > 127
Dickeya dadantii 3937 0.44 DDA3937_RS14030 gamma-glutamyltransferase 0.51 DDA3937_RS00105 DNA polymerase I — —
Dickeya dianthicola 67-19 0.44 HGI48_RS14025 gamma-glutamyltransferase 0.51 HGI48_RS21260 DNA polymerase I — —
Pseudomonas fluorescens FW300-N2C3 0.44 AO356_22255 gamma-glutamyltranspeptidase 0.50 AO356_11465 DNA polymerase I low > 104
Pseudomonas fluorescens FW300-N2E2 0.44 Pf6N2E2_313 Gamma-glutamyltranspeptidase (EC 2.3.2.2) 0.50 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) low > 103
Pseudomonas sp. RS175 0.44 PFR28_02593 Glutathione hydrolase proenzyme 0.50 PFR28_04624 DNA polymerase I low > 88
Pectobacterium carotovorum WPP14 0.44 HER17_RS00330 gamma-glutamyltransferase 0.51 HER17_RS21470 DNA polymerase I — —
Pseudomonas fluorescens FW300-N1B4 0.44 Pf1N1B4_4081 Gamma-glutamyltranspeptidase (EC 2.3.2.2) 0.49 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) — —
Pedobacter sp. GW460-11-11-14-LB5 0.42 CA265_RS17620 gamma-glutamyltransferase 0.34 CA265_RS19630 DNA polymerase I low > 88
Pontibacter actiniarum KMM 6156, DSM 19842 0.40 CA264_13180 gamma-glutamyltransferase 0.35 CA264_16535 DNA polymerase I — —
Caulobacter crescentus NA1000 Δfur 0.40 CCNA_01035 gamma-glutamyltranspeptidase 0.37 CCNA_03577 DNA polymerase I low > 67
Caulobacter crescentus NA1000 0.40 CCNA_01035 gamma-glutamyltranspeptidase 0.37 CCNA_03577 DNA polymerase I low > 66
Echinicola vietnamensis KMM 6221, DSM 17526 0.38 Echvi_3948 gamma-glutamyltranspeptidase 0.35 Echvi_1032 DNA polymerase I low > 79
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS14675 gamma-glutamyltransferase 0.69 QEN71_RS17885 DNA polymerase I — —
Alteromonas macleodii MIT1002 0.36 MIT1002_00538 Gamma-glutamyltranspeptidase precursor 0.54 MIT1002_00014 DNA polymerase I low > 70
Pseudomonas putida KT2440 0.36 PP_4659 gamma-glutamyltranspeptidase 0.52 PP_0123 DNA polymerase I, 5 low > 96
Burkholderia phytofirmans PsJN 0.36 BPHYT_RS21360 gamma-glutamyltranspeptidase 0.68 BPHYT_RS33610 DNA polymerase I low > 109
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_01608 gamma-glutamyltransferase 1 Threonine peptidase. MEROPS family T03 0.68 H281DRAFT_06022 DNA polymerase I low > 103
Paraburkholderia graminis OAS925 0.35 ABIE53_004289 gamma-glutamyltranspeptidase/glutathione hydrolase 0.68 ABIE53_004852 DNA polymerase-1 low > 113
Lysobacter sp. OAE881 0.35 ABIE51_RS15105 gamma-glutamyltransferase 0.52 ABIE51_RS02010 DNA polymerase I low > 62
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.2158.1 Gamma-glutamyltranspeptidase (EC 2.3.2.2) 0.52 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas stutzeri RCH2 0.34 Psest_1413 gamma-glutamyltranspeptidase 0.52 Psest_4219 DNA polymerase I low > 67
Rhodanobacter denitrificans MT42 0.32 LRK55_RS13100 gamma-glutamyltransferase 0.54 LRK55_RS06585 DNA polymerase I low > 63
Rhodanobacter denitrificans FW104-10B01 0.31 LRK54_RS13360 gamma-glutamyltransferase 0.54 LRK54_RS06840 DNA polymerase I low > 59
Rhodanobacter sp. FW510-T8 0.31 OKGIIK_02600 ggt gamma-glutamyltransferase 0.54 OKGIIK_16785 polA DNA polymerase I low > 52
Bosea sp. OAE506 0.30 ABIE41_RS10575 gamma-glutamyltransferase 0.34 ABIE41_RS03570 DNA polymerase I low > 77
Dyella japonica UNC79MFTsu3.2 0.29 ABZR86_RS20010 gamma-glutamyltransferase 0.55 ABZR86_RS17015 DNA polymerase I low > 74
Vibrio cholerae E7946 ATCC 55056 0.28 CSW01_01035 gamma-glutamyltransferase 0.53 CSW01_00560 DNA polymerase I low > 62
Agrobacterium fabrum C58 0.28 Atu5507 gamma-glutamyltranspeptidase 0.37 Atu0110 DNA polymerase I — —
Dinoroseobacter shibae DFL-12 0.25 Dshi_0675 gamma-glutamyltransferase (RefSeq) 0.37 Dshi_2909 DNA polymerase I (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.25 PGA1_c28250 gamma-glutamyltranspeptidase Ggt 0.38 PGA1_c31780 DNA polymerase I low > 62
Azospirillum brasilense Sp245 0.24 AZOBR_RS03085 gamma-glutamyltransferase 0.36 AZOBR_RS30685 DNA polymerase low > 97
Pseudomonas sp. S08-1 0.23 OH686_14140 gamma-glutamyltransferase 0.52 OH686_12215 DNA polymerase I low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.22 GFF3824 Gamma-glutamyltranspeptidase (EC 2.3.2.2) 0.59 GFF5584 DNA polymerase I (EC 2.7.7.7) low > 90
Pseudomonas fluorescens FW300-N2E3 0.21 AO353_14670 gamma-glutamyltransferase 0.51 AO353_10930 DNA polymerase I low > 101
Cupriavidus basilensis FW507-4G11 0.21 RR42_RS26175 gamma-glutamyltransferase 0.71 RR42_RS15050 DNA polymerase I low > 128
Mycobacterium tuberculosis H37Rv 0.20 Rv0773c Probable bifunctional acylase GgtA: cephalosporin acylase (GL-7ACA acylase) + gamma-glutamyltranspeptidase (GGT) 0.18 Rv1629 Probable DNA polymerase I PolA — —
Brevundimonas sp. GW460-12-10-14-LB2 0.19 A4249_RS14305 gamma-glutamyltransferase family protein 0.38 A4249_RS13840 DNA polymerase I — —
Sphingomonas koreensis DSMZ 15582 0.18 Ga0059261_3349 Gamma-glutamyltransferase 0.35 Ga0059261_2244 DNA polymerase I (EC 2.7.7.7) low > 68
Magnetospirillum magneticum AMB-1 0.12 AMB_RS07035 gamma-glutamyltransferase 0.37 AMB_RS21305 DNA polymerase I — —

Not shown: 0 genomes with orthologs for HSERO_RS05455 only; 12 genomes with orthologs for HSERO_RS02260 only