Conservation of cofitness between HSERO_RS07150 and HSERO_RS02120 in Herbaspirillum seropedicae SmR1

88 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS07150 apolipoprotein acyltransferase 1.0 HSERO_RS02120 phosphomethylpyrimidine synthase ThiC 0.40 17
Paraburkholderia sabiae LMG 24235 0.68 QEN71_RS26550 carbon-nitrogen hydrolase family protein 0.87 QEN71_RS05480 phosphomethylpyrimidine synthase ThiC 0.40 49
Paraburkholderia bryophila 376MFSha3.1 0.68 H281DRAFT_04689 nitrilase 0.87 H281DRAFT_00395 hydroxymethylpyrimidine synthase 0.34 7
Burkholderia phytofirmans PsJN 0.68 BPHYT_RS03545 apolipoprotein acyltransferase 0.86 BPHYT_RS13220 phosphomethylpyrimidine synthase low > 109
Paraburkholderia graminis OAS925 0.68 ABIE53_000852 putative amidohydrolase 0.86 ABIE53_002857 phosphomethylpyrimidine synthase low > 113
Cupriavidus basilensis FW507-4G11 0.64 RR42_RS05880 acyltransferase 0.70 RR42_RS01290 thiamine biosynthesis protein ThiC low > 128
Ralstonia solanacearum GMI1000 0.62 RS_RS13310 carbon-nitrogen hydrolase family protein 0.70 RS_RS00555 phosphomethylpyrimidine synthase low > 80
Ralstonia solanacearum PSI07 0.62 RPSI07_RS11855 carbon-nitrogen hydrolase family protein 0.70 RPSI07_RS23420 phosphomethylpyrimidine synthase ThiC low > 81
Castellaniella sp019104865 MT123 0.62 ABCV34_RS02585 carbon-nitrogen hydrolase family protein 0.84 ABCV34_RS10825 phosphomethylpyrimidine synthase ThiC low > 48
Ralstonia solanacearum UW163 0.61 UW163_RS08175 carbon-nitrogen hydrolase family protein 0.70 UW163_RS03640 phosphomethylpyrimidine synthase ThiC — —
Ralstonia solanacearum IBSBF1503 0.61 RALBFv3_RS05450 carbon-nitrogen hydrolase family protein 0.70 RALBFv3_RS09940 phosphomethylpyrimidine synthase ThiC low > 76
Ralstonia sp. UNC404CL21Col 0.61 ABZR87_RS01100 carbon-nitrogen hydrolase family protein 0.71 ABZR87_RS04785 phosphomethylpyrimidine synthase ThiC low > 80
Dechlorosoma suillum PS 0.59 Dsui_3402 putative amidohydrolase 0.85 Dsui_0422 thiamine biosynthesis protein ThiC — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.53 GFF2535 FIG003879: Predicted amidohydrolase 0.68 GFF4626 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) low > 90
Acidovorax sp. GW101-3H11 0.51 Ac3H11_1207 FIG003879: Predicted amidohydrolase 0.68 Ac3H11_2027 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) low > 79
Variovorax sp. SCN45 0.50 GFF5445 FIG003879: Uncharacterized subgroup of the nitrilase superfamily 0.70 GFF2000 Phosphomethylpyrimidine synthase ThiC (EC 4.1.99.17) low > 127
Variovorax sp. OAS795 0.49 ABID97_RS02000 carbon-nitrogen hydrolase family protein 0.68 ABID97_RS25235 phosphomethylpyrimidine synthase ThiC low > 91
Pseudomonas sp. S08-1 0.44 OH686_08585 Uncharacterized subgroup of the nitrilase superfamily 0.76 OH686_15885 phosphomethylpyrimidine synthase low > 80
Alteromonas macleodii MIT1002 0.42 MIT1002_00226 (R)-stereoselective amidase 0.68 MIT1002_00097 Phosphomethylpyrimidine synthase low > 70
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_4157 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 0.76 Psyr_0544 hydroxymethylpyrimidine synthase low > 86
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_4157 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 0.76 Psyr_0544 hydroxymethylpyrimidine synthase low > 86
Pseudomonas sp. RS175 0.41 PFR28_00160 Deaminated glutathione amidase 0.75 PFR28_05091 Phosphomethylpyrimidine synthase low > 88
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_5027 FIG003879: Predicted amidohydrolase / Omega amidase (Nit2 homolog) 0.75 PfGW456L13_187 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) low > 87
Pseudomonas fluorescens FW300-N2E2 0.41 Pf6N2E2_3281 FIG003879: Predicted amidohydrolase / Omega amidase (Nit2 homolog) 0.75 Pf6N2E2_3644 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) low > 103
Pseudomonas fluorescens FW300-N2C3 0.41 AO356_07100 carbon-nitrogen hydrolase 0.75 AO356_08810 thiamine biosynthesis protein ThiC low > 104
Marinobacter adhaerens HP15 0.41 HP15_2449 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 0.79 HP15_453 thiamine biosynthesis protein thiC low > 73
Pseudomonas fluorescens FW300-N1B4 0.41 Pf1N1B4_1093 FIG003879: Predicted amidohydrolase / Omega amidase (Nit2 homolog) 0.75 Pf1N1B4_1447 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) low > 87
Pseudomonas fluorescens SBW25-INTG 0.40 PFLU_RS04335 carbon-nitrogen hydrolase family protein 0.75 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC low > 109
Pseudomonas simiae WCS417 0.40 PS417_04280 carbon-nitrogen hydrolase 0.75 PS417_02355 thiamine biosynthesis protein ThiC low > 88
Pseudomonas fluorescens SBW25 0.40 PFLU_RS04335 carbon-nitrogen hydrolase family protein 0.75 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC low > 109
Pseudomonas stutzeri RCH2 0.40 Psest_3321 Predicted amidohydrolase 0.76 Psest_0477 thiamine biosynthesis protein ThiC low > 67
Vibrio cholerae E7946 ATCC 55056 0.40 CSW01_02215 carbon-nitrogen hydrolase family protein 0.67 CSW01_00335 phosphomethylpyrimidine synthase low > 62
Pseudomonas fluorescens FW300-N2E3 0.40 AO353_05220 carbon-nitrogen hydrolase 0.75 AO353_13010 thiamine biosynthesis protein ThiC low > 101
Pseudomonas putida KT2440 0.39 PP_0939 Carbon-nitrogen hydrolase family protein 0.76 PP_4922 Phosphomethylpyrimidine synthase low > 96
Shewanella loihica PV-4 0.39 Shew_0409 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (RefSeq) 0.69 Shew_2096 thiamine biosynthesis protein ThiC (RefSeq) low > 60
Kangiella aquimarina DSM 16071 0.38 B158DRAFT_2071 Predicted amidohydrolase 0.69 B158DRAFT_0295 hydroxymethylpyrimidine synthase low > 40
Serratia liquefaciens MT49 0.37 IAI46_22690 carbon-nitrogen hydrolase family protein 0.69 IAI46_01320 phosphomethylpyrimidine synthase ThiC low > 86
Azospirillum brasilense Sp245 0.36 AZOBR_RS02920 amidohydrolase 0.65 AZOBR_RS07940 phosphomethylpyrimidine synthase low > 97
Rhodopseudomonas palustris CGA009 0.36 TX73_003100 carbon-nitrogen hydrolase family protein 0.63 TX73_018540 phosphomethylpyrimidine synthase ThiC low > 86
Rhodospirillum rubrum S1H 0.35 Rru_A0739 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (NCBI) 0.58 Rru_A2008 Thiamine biosynthesis protein ThiC (NCBI) low > 58
Phaeobacter inhibens DSM 17395 0.35 PGA1_c34700 putative carbon-nitrogen hydrolase 0.63 PGA1_c09110 thiamine biosynthesis protein ThiC low > 62
Magnetospirillum magneticum AMB-1 0.35 AMB_RS08115 carbon-nitrogen hydrolase family protein 0.65 AMB_RS01125 phosphomethylpyrimidine synthase — —
Azospirillum sp. SherDot2 0.35 MPMX19_02429 Deaminated glutathione amidase 0.62 MPMX19_00336 Phosphomethylpyrimidine synthase low > 112
Sphingomonas koreensis DSMZ 15582 0.35 Ga0059261_3603 Predicted amidohydrolase 0.63 Ga0059261_2424 hydroxymethylpyrimidine synthase low > 68
Shewanella sp. ANA-3 0.35 Shewana3_3642 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (RefSeq) 0.68 Shewana3_1936 thiamine biosynthesis protein ThiC (RefSeq) low > 73
Sinorhizobium meliloti 1021 0.34 SMc02442 hydrolase 0.64 SM_b20615 thiamine biosynthesis protein ThiC low > 103
Shewanella oneidensis MR-1 0.34 SO4092 hydrolase, carbon-nitrogen family (NCBI ptt file) 0.68 SO2445 thiC thiamin biosynthesis protein ThiC (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.33 Sama_0473 carbon-nitrogen family hydrolase (RefSeq) 0.69 Sama_1860 thiamine biosynthesis protein ThiC (RefSeq) low > 62
Agrobacterium fabrum C58 0.33 Atu3510 amidohydrolase 0.63 Atu2569 thiamine biosynthesis protein low > 89
Acinetobacter radioresistens SK82 0.33 MPMX26_00580 Deaminated glutathione amidase 0.73 MPMX26_00180 Phosphomethylpyrimidine synthase low > 36
Caulobacter crescentus NA1000 Δfur 0.31 CCNA_00871 carbon-nitrogen hydrolase family protein 0.63 CCNA_02109 thiamine biosynthesis protein thiC low > 67
Caulobacter crescentus NA1000 0.31 CCNA_00871 carbon-nitrogen hydrolase family protein 0.63 CCNA_02109 thiamine biosynthesis protein thiC low > 66
Brevundimonas sp. GW460-12-10-14-LB2 0.30 A4249_RS13565 carbon-nitrogen hydrolase family protein 0.63 A4249_RS15715 phosphomethylpyrimidine synthase ThiC low > 48
Dinoroseobacter shibae DFL-12 0.29 Dshi_3506 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (RefSeq) 0.64 Dshi_4080 thiamine biosynthesis protein ThiC (RefSeq) — —
Erwinia tracheiphila SCR3 0.24 LU632_RS16420 deaminated glutathione amidase 0.68 LU632_RS00970 thiC phosphomethylpyrimidine synthase ThiC low > 74
Pantoea sp. MT58 0.21 IAI47_14065 deaminated glutathione amidase 0.68 IAI47_18085 phosphomethylpyrimidine synthase ThiC low > 76
Dickeya dianthicola 67-19 0.21 HGI48_RS19475 deaminated glutathione amidase 0.68 HGI48_RS01170 phosphomethylpyrimidine synthase ThiC 0.55 13
Enterobacter asburiae PDN3 0.21 EX28DRAFT_2337 Predicted amidohydrolase 0.69 EX28DRAFT_4536 phosphomethylpyrimidine synthase low > 76
Klebsiella michiganensis M5al 0.21 BWI76_RS07990 carbon-nitrogen hydrolase 0.68 BWI76_RS01555 phosphomethylpyrimidine synthase ThiC — —
Escherichia coli ECRC62 0.20 BNILDI_21795 tatE deaminated glutathione amidase 0.69 BNILDI_06005 thiC phosphomethylpyrimidine synthase ThiC low > 75
Escherichia coli ECRC100 0.19 OKFHMN_07410 tatE deaminated glutathione amidase 0.69 OKFHMN_13375 thiC phosphomethylpyrimidine synthase ThiC low > 80
Escherichia coli ECRC102 0.19 NIAGMN_05465 tatE deaminated glutathione amidase 0.69 NIAGMN_11125 thiC phosphomethylpyrimidine synthase ThiC — —
Escherichia coli ECOR27 0.19 NOLOHH_23785 tatE deaminated glutathione amidase 0.69 NOLOHH_05520 thiC phosphomethylpyrimidine synthase ThiC low > 75
Escherichia coli ECRC98 0.19 JDDGAC_11055 tatE deaminated glutathione amidase 0.69 JDDGAC_17000 thiC phosphomethylpyrimidine synthase ThiC low > 86
Escherichia coli ECRC101 0.19 MCAODC_26625 tatE deaminated glutathione amidase 0.69 MCAODC_03875 thiC phosphomethylpyrimidine synthase ThiC low > 87
Escherichia coli BL21 0.19 ECD_00595 putative NAD(P)-binding amidase-type enzyme YbeM (C-N hydrolase family) 0.69 ECD_03871 phosphomethylpyrimidine synthase low > 61
Escherichia coli ECRC99 0.19 KEDOAH_20560 tatE deaminated glutathione amidase 0.69 KEDOAH_14785 thiC phosphomethylpyrimidine synthase ThiC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.19 OHPLBJKB_03080 Deaminated glutathione amidase 0.69 OHPLBJKB_04056 Phosphomethylpyrimidine synthase low > 73
Escherichia coli ECOR38 0.19 HEPCGN_00865 tatE deaminated glutathione amidase 0.69 HEPCGN_12010 thiC phosphomethylpyrimidine synthase ThiC low > 87
Escherichia coli Nissle 1917 0.19 ECOLIN_RS03410 deaminated glutathione amidase 0.69 ECOLIN_RS23040 phosphomethylpyrimidine synthase ThiC — —
Rahnella sp. WP5 0.19 EX31_RS23065 deaminated glutathione amidase 0.69 EX31_RS16815 phosphomethylpyrimidine synthase ThiC low > 89
Escherichia fergusonii Becca 0.19 EFB2_03466 Deaminated glutathione amidase 0.69 EFB2_04617 Phosphomethylpyrimidine synthase low > 86
Enterobacter sp. TBS_079 0.18 MPMX20_01285 Deaminated glutathione amidase 0.69 MPMX20_00217 Phosphomethylpyrimidine synthase low > 85
Pectobacterium carotovorum WPP14 0.18 HER17_RS17575 deaminated glutathione amidase 0.70 HER17_RS20380 phosphomethylpyrimidine synthase ThiC low > 75
Dickeya dadantii 3937 0.18 DDA3937_RS06130 deaminated glutathione amidase 0.69 DDA3937_RS01175 phosphomethylpyrimidine synthase ThiC low > 74
Dickeya dianthicola ME23 0.18 DZA65_RS06520 deaminated glutathione amidase 0.68 DZA65_RS01215 phosphomethylpyrimidine synthase ThiC 0.35 68
Pedobacter sp. GW460-11-11-14-LB5 0.17 CA265_RS08135 amidohydrolase 0.72 CA265_RS20165 phosphomethylpyrimidine synthase ThiC low > 88
Mycobacterium tuberculosis H37Rv 0.16 Rv0480c Possible amidohydrolase 0.52 Rv0423c Probable thiamine biosynthesis protein ThiC — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.16 GFF4538 Aliphatic amidase AmiE (EC 3.5.1.4) 0.70 GFF4198 Thiamin biosynthesis protein ThiC low > 78
Xanthomonas campestris pv. campestris strain 8004 0.16 Xcc-8004.2374.1 N-carbamoylputrescine amidase (3.5.1.53) / Aliphatic amidase AmiE (EC 3.5.1.4) 0.74 Xcc-8004.1066.1 hypothetical protein — —
Lysobacter sp. OAE881 0.15 ABIE51_RS09320 carbon-nitrogen hydrolase 0.73 ABIE51_RS17515 phosphomethylpyrimidine synthase ThiC — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS18075 carbon-nitrogen hydrolase 0.73 ABZR88_RS08840 phosphomethylpyrimidine synthase ThiC — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.14 Echvi_1887 Predicted amidohydrolase 0.72 Echvi_3567 thiamine biosynthesis protein ThiC low > 79
Bosea sp. OAE506 0.14 ABIE41_RS12325 N-carbamoyl-D-amino-acid hydrolase 0.61 ABIE41_RS02770 phosphomethylpyrimidine synthase ThiC low > 77
Bacteroides thetaiotaomicron VPI-5482 0.14 BT0259 putative amidohydrolase (NCBI ptt file) 0.58 BT0650 thiamine biosynthesis protein ThiC (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.14 BACOVA_00412 hydrolase, carbon-nitrogen family 0.58 BACOVA_02358 thiamine biosynthesis protein ThiC low > 94
Dyella japonica UNC79MFTsu3.2 0.13 ABZR86_RS02765 carbon-nitrogen hydrolase 0.76 ABZR86_RS17230 phosphomethylpyrimidine synthase ThiC — —
Escherichia coli BW25113 0.12 b0219 yafV predicted C-N hydrolase family amidase, NAD(P)-binding (NCBI) 0.69 b3994 thiC thiamine biosynthesis protein ThiC (NCBI) low > 76
Rhodanobacter sp. FW510-T8 0.12 OKGIIK_06395 nit2 amidohydrolase 0.76 OKGIIK_16965 thiC phosphomethylpyrimidine synthase ThiC low > 52

Not shown: 4 genomes with orthologs for HSERO_RS07150 only; 5 genomes with orthologs for HSERO_RS02120 only