Conservation of cofitness between HER17_RS17890 and HER17_RS08775 in Pectobacterium carotovorum WPP14

87 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS17890 site-specific tyrosine recombinase XerD 1.0 HER17_RS08775 transcription-repair coupling factor 0.59 19
Serratia liquefaciens MT49 0.89 IAI46_20730 site-specific tyrosine recombinase XerD 0.86 IAI46_10320 transcription-repair coupling factor low > 86
Dickeya dianthicola ME23 0.88 DZA65_RS03485 site-specific tyrosine recombinase XerD 0.89 DZA65_RS13530 transcription-repair coupling factor — —
Dickeya dianthicola 67-19 0.88 HGI48_RS03440 site-specific tyrosine recombinase XerD 0.89 HGI48_RS13065 transcription-repair coupling factor low > 71
Dickeya dadantii 3937 0.87 DDA3937_RS03300 site-specific tyrosine recombinase XerD 0.90 DDA3937_RS13000 transcription-repair coupling factor 0.33 38
Erwinia tracheiphila SCR3 0.85 LU632_RS05975 xerD site-specific tyrosine recombinase XerD 0.82 LU632_RS14730 mfd transcription-repair coupling factor — —
Pantoea sp. MT58 0.85 IAI47_03820 site-specific tyrosine recombinase XerD 0.81 IAI47_11975 transcription-repair coupling factor low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.84 GFF2991 Tyrosine recombinase XerD 0.84 GFF3397 Transcription-repair coupling factor low > 78
Enterobacter asburiae PDN3 0.84 EX28DRAFT_2945 tyrosine recombinase XerD 0.83 EX28DRAFT_1816 transcription-repair coupling factor (mfd) low > 76
Enterobacter sp. TBS_079 0.84 MPMX20_03753 Tyrosine recombinase XerD 0.83 MPMX20_01795 Transcription-repair-coupling factor low > 85
Escherichia coli BW25113 0.84 b2894 xerD site-specific tyrosine recombinase XerD (NCBI) 0.84 b1114 mfd transcription-repair coupling factor (NCBI) low > 76
Escherichia coli BL21 0.84 ECD_02726 site-specific tyrosine recombinase 0.84 ECD_01110 transcription-repair coupling factor low > 61
Escherichia fergusonii Becca 0.84 EFB2_01007 Tyrosine recombinase XerD 0.84 EFB2_02861 Transcription-repair-coupling factor low > 86
Escherichia coli ECRC99 0.84 KEDOAH_08570 xerD site-specific tyrosine recombinase XerD 0.84 KEDOAH_24285 mfd transcription-repair coupling factor — —
Escherichia coli ECOR38 0.84 HEPCGN_18860 xerD site-specific tyrosine recombinase XerD 0.84 HEPCGN_24015 mfd transcription-repair coupling factor 0.68 12
Escherichia coli ECOR27 0.84 NOLOHH_11495 xerD site-specific tyrosine recombinase XerD 0.84 NOLOHH_20995 mfd transcription-repair coupling factor low > 75
Escherichia coli ECRC101 0.84 MCAODC_10090 xerD site-specific tyrosine recombinase XerD 0.84 MCAODC_22830 mfd transcription-repair coupling factor — —
Escherichia coli ECRC98 0.84 JDDGAC_23210 xerD site-specific tyrosine recombinase XerD 0.84 JDDGAC_07130 mfd transcription-repair coupling factor — —
Escherichia coli ECRC62 0.84 BNILDI_10025 xerD site-specific tyrosine recombinase XerD 0.84 BNILDI_19160 mfd transcription-repair coupling factor low > 75
Escherichia coli ECRC100 0.84 OKFHMN_19570 xerD site-specific tyrosine recombinase XerD 0.84 OKFHMN_03470 mfd transcription-repair coupling factor low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.83 OHPLBJKB_00821 Tyrosine recombinase XerD 0.85 OHPLBJKB_02552 Transcription-repair-coupling factor low > 73
Rahnella sp. WP5 0.83 EX31_RS13480 site-specific tyrosine recombinase XerD 0.85 EX31_RS24520 transcription-repair coupling factor low > 89
Escherichia coli ECRC102 0.83 NIAGMN_17335 xerD site-specific tyrosine recombinase XerD 0.84 NIAGMN_24360 mfd transcription-repair coupling factor — —
Klebsiella michiganensis M5al 0.82 BWI76_RS23815 site-specific tyrosine recombinase XerD 0.83 BWI76_RS11205 transcription-repair coupling factor — —
Vibrio cholerae E7946 ATCC 55056 0.72 CSW01_12250 site-specific tyrosine recombinase XerD 0.64 CSW01_09445 transcription-repair coupling factor low > 62
Pseudomonas putida KT2440 0.60 PP_1468 Tyrosine recombinase XerD 0.53 PP_2148 transcription-repair coupling factor low > 96
Pseudomonas sp. S08-1 0.58 OH686_17750 tyrosine recombinase XerD 0.55 OH686_21990 transcription-repair coupling factor low > 80
Marinobacter adhaerens HP15 0.58 HP15_762 site-specific tyrosine recombinase XerD 0.52 HP15_2257 transcription-repair-coupling factor low > 73
Shewanella sp. ANA-3 0.58 Shewana3_3331 tyrosine recombinase XerD (RefSeq) 0.56 Shewana3_2289 transcription-repair coupling factor (RefSeq) low > 73
Pseudomonas syringae pv. syringae B728a ΔmexB 0.58 Psyr_1286 tyrosine recombinase XerD subunit 0.53 Psyr_1896 transcription-repair coupling factor low > 86
Pseudomonas syringae pv. syringae B728a 0.58 Psyr_1286 tyrosine recombinase XerD subunit 0.53 Psyr_1896 transcription-repair coupling factor low > 86
Shewanella oneidensis MR-1 0.58 SO0950 xerD integrase/recombinase XerD (NCBI ptt file) 0.56 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) low > 76
Pseudomonas fluorescens GW456-L13 0.58 PfGW456L13_1721 Tyrosine recombinase XerD 0.53 PfGW456L13_4027 Transcription-repair coupling factor low > 87
Pseudomonas fluorescens FW300-N2E3 0.58 AO353_04365 recombinase XerD 0.53 AO353_00435 transcription-repair coupling factor low > 101
Pseudomonas fluorescens FW300-N2C3 0.57 AO356_06385 recombinase XerD 0.53 AO356_02270 transcription-repair coupling factor 0.29 42
Pseudomonas fluorescens FW300-N2E2 0.57 Pf6N2E2_3145 Tyrosine recombinase XerD 0.53 Pf6N2E2_2278 Transcription-repair coupling factor — —
Pseudomonas fluorescens FW300-N1B4 0.57 Pf1N1B4_3011 Tyrosine recombinase XerD 0.53 Pf1N1B4_3916 Transcription-repair coupling factor 0.32 2
Pseudomonas fluorescens SBW25-INTG 0.57 PFLU_RS24560 site-specific tyrosine recombinase XerD 0.53 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas sp. RS175 0.57 PFR28_00331 Tyrosine recombinase XerD 0.53 PFR28_01123 Transcription-repair-coupling factor low > 88
Pseudomonas fluorescens SBW25 0.57 PFLU_RS24560 site-specific tyrosine recombinase XerD 0.53 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas simiae WCS417 0.57 PS417_22895 tyrosine recombinase XerD 0.53 PS417_07635 transcription-repair coupling factor low > 88
Shewanella loihica PV-4 0.57 Shew_0770 tyrosine recombinase XerD (RefSeq) 0.56 Shew_1630 transcription-repair coupling factor (RefSeq) low > 60
Pseudomonas stutzeri RCH2 0.56 Psest_3129 tyrosine recombinase XerD 0.54 Psest_1653 transcription-repair coupling factor (mfd) 0.17 44
Shewanella amazonensis SB2B 0.56 Sama_2739 integrase/recombinase XerD (RefSeq) 0.56 Sama_1330 transcription-repair coupling factor (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.56 MIT1002_00786 Tyrosine recombinase XerD 0.58 MIT1002_01646 Transcription-repair-coupling factor low > 70
Lysobacter sp. OAE881 0.56 ABIE51_RS04495 site-specific tyrosine recombinase XerD 0.48 ABIE51_RS14320 transcription-repair coupling factor low > 62
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_2265 tyrosine recombinase XerD 0.52 B158DRAFT_1800 transcription-repair coupling factor low > 40
Burkholderia phytofirmans PsJN 0.54 BPHYT_RS15950 tyrosine recombinase XerD 0.45 BPHYT_RS09290 helicase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.54 H281DRAFT_04126 integrase/recombinase XerD 0.45 H281DRAFT_00880 transcription-repair coupling factor — —
Paraburkholderia sabiae LMG 24235 0.53 QEN71_RS02755 site-specific tyrosine recombinase XerD 0.45 QEN71_RS22060 transcription-repair coupling factor — —
Castellaniella sp019104865 MT123 0.53 ABCV34_RS00515 site-specific tyrosine recombinase XerD 0.43 ABCV34_RS08660 transcription-repair coupling factor low > 48
Ralstonia solanacearum PSI07 0.53 RPSI07_RS12160 site-specific tyrosine recombinase XerD 0.45 RPSI07_RS16040 transcription-repair coupling factor 0.39 68
Ralstonia solanacearum GMI1000 0.53 RS_RS12755 tyrosine recombinase XerD 0.45 RS_RS08275 transcription-repair coupling factor — —
Paraburkholderia graminis OAS925 0.53 ABIE53_003361 integrase/recombinase XerD 0.45 ABIE53_002095 transcription-repair coupling factor (superfamily II helicase) low > 113
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS05140 site-specific tyrosine recombinase XerD 0.45 RALBFv3_RS01445 transcription-repair coupling factor low > 76
Ralstonia solanacearum UW163 0.52 UW163_RS08485 site-specific tyrosine recombinase XerD 0.45 UW163_RS14755 transcription-repair coupling factor — —
Variovorax sp. OAS795 0.52 ABID97_RS20265 site-specific tyrosine recombinase XerD 0.45 ABID97_RS17285 transcription-repair coupling factor low > 91
Variovorax sp. SCN45 0.52 GFF2772 Site-specific tyrosine recombinase XerD 0.45 GFF412 Transcription-repair coupling factor low > 127
Xanthomonas campestris pv. campestris strain 8004 0.52 Xcc-8004.4441.1 Tyrosine recombinase XerD 0.47 Xcc-8004.1775.1 Transcription-repair coupling factor low > 74
Dechlorosoma suillum PS 0.52 Dsui_1217 tyrosine recombinase XerD 0.44 Dsui_2385 transcription-repair coupling factor Mfd low > 51
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS04265 tyrosine recombinase XerD 0.46 HSERO_RS15180 transcription-repair coupling factor 0.38 23
Cupriavidus basilensis FW507-4G11 0.51 RR42_RS03345 recombinase XerD 0.44 RR42_RS07845 transcription-repair coupling factor low > 128
Acidovorax sp. GW101-3H11 0.51 Ac3H11_302 Tyrosine recombinase XerD 0.45 Ac3H11_328 Transcription-repair coupling factor — —
Ralstonia sp. UNC404CL21Col 0.49 ABZR87_RS00795 site-specific tyrosine recombinase XerD 0.46 ABZR87_RS13240 transcription-repair coupling factor low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.49 GFF5461 Tyrosine recombinase XerD 0.44 GFF4934 Transcription-repair coupling factor low > 90
Rhodanobacter sp. FW510-T8 0.47 OKGIIK_11520 xerD site-specific tyrosine recombinase XerD 0.49 OKGIIK_09105 mfd transcription-repair coupling factor low > 52
Dyella japonica UNC79MFTsu3.2 0.47 ABZR86_RS19225 site-specific tyrosine recombinase XerD 0.50 ABZR86_RS21210 transcription-repair coupling factor low > 74
Acinetobacter radioresistens SK82 0.46 MPMX26_00169 Tyrosine recombinase XerD 0.47 MPMX26_01319 Transcription-repair-coupling factor — —
Rhodanobacter denitrificans MT42 0.46 LRK55_RS04515 site-specific tyrosine recombinase XerD 0.49 LRK55_RS01815 transcription-repair coupling factor low > 63
Rhodanobacter denitrificans FW104-10B01 0.46 LRK54_RS04735 site-specific tyrosine recombinase XerD 0.49 LRK54_RS02040 transcription-repair coupling factor low > 59
Azospirillum sp. SherDot2 0.39 MPMX19_02643 Tyrosine recombinase XerD 0.32 MPMX19_00876 Transcription-repair-coupling factor — —
Agrobacterium fabrum C58 0.39 Atu3629 site-specific tyrosine recombinase XerD 0.30 Atu1778 transcription-repair coupling factor — —
Sinorhizobium meliloti 1021 0.39 SMc00691 site-specific tyrosine recombinase XerD 0.31 SMc04450 transcription-repair coupling factor low > 103
Rhizobium sp. OAE497 0.39 ABIE40_RS17685 site-specific tyrosine recombinase XerD 0.30 ABIE40_RS09310 transcription-repair coupling factor low > 107
Rhodopseudomonas palustris CGA009 0.37 TX73_002625 site-specific tyrosine recombinase XerD 0.32 TX73_013805 transcription-repair coupling factor low > 86
Rhodospirillum rubrum S1H 0.35 Rru_A3738 Phage integrase (NCBI) 0.32 Rru_A1726 Transcription-repair coupling factor (NCBI) — —
Magnetospirillum magneticum AMB-1 0.35 AMB_RS19880 site-specific tyrosine recombinase XerD 0.33 AMB_RS12390 transcription-repair coupling factor low > 64
Echinicola vietnamensis KMM 6221, DSM 17526 0.35 Echvi_1809 tyrosine recombinase XerD 0.25 Echvi_1312 transcription-repair coupling factor (mfd) low > 79
Bosea sp. OAE506 0.34 ABIE41_RS06100 site-specific tyrosine recombinase XerD 0.32 ABIE41_RS15825 transcription-repair coupling factor low > 77
Parabacteroides merdae CL09T00C40 0.34 HMPREF1078_RS04705 site-specific tyrosine recombinase XerD 0.25 HMPREF1078_RS02110 transcription-repair coupling factor low > 61
Desulfovibrio vulgaris Hildenborough JW710 0.34 DVU1654 xerD site-specific recombinase, phage integrase family (TIGR) 0.27 DVU1903 mfd transcription-repair coupling factor (TIGR) 0.33 37
Desulfovibrio vulgaris Miyazaki F 0.34 DvMF_0359 tyrosine recombinase XerD (RefSeq) 0.26 DvMF_0285 transcription-repair coupling factor (RefSeq) low > 51
Brevundimonas sp. GW460-12-10-14-LB2 0.33 A4249_RS04165 site-specific tyrosine recombinase XerD 0.32 A4249_RS04775 transcription-repair coupling factor — —
Phaeobacter inhibens DSM 17395 0.33 PGA1_c14060 tyrosine recombinase XerD 0.31 PGA1_c14920 transcription-repair-coupling factor Mfd low > 62
Dinoroseobacter shibae DFL-12 0.33 Dshi_1611 integrase family protein (RefSeq) 0.31 Dshi_1561 transcription-repair coupling factor (RefSeq) low > 64
Caulobacter crescentus NA1000 0.32 CCNA_03101 site-specific tyrosine recombinase XerD 0.32 CCNA_01920 transcription-repair coupling factor Mfd 0.59 11
Caulobacter crescentus NA1000 Δfur 0.32 CCNA_03101 site-specific tyrosine recombinase XerD 0.32 CCNA_01920 transcription-repair coupling factor Mfd low > 67
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_3595 Site-specific recombinase XerD 0.33 Ga0059261_0960 transcription-repair coupling factor (mfd) low > 68

Not shown: 12 genomes with orthologs for HER17_RS17890 only; 1 genomes with orthologs for HER17_RS08775 only