Conservation of cofitness between PS417_25395 and PS417_22830 in Pseudomonas simiae WCS417

100 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_25395 excinuclease ABC subunit A 1.0 PS417_22830 DNA polymerase IV 0.35 16
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS27025 excinuclease ABC subunit UvrA 0.99 PFLU_RS24490 DNA polymerase IV low > 109
Pseudomonas fluorescens SBW25 1.00 PFLU_RS27025 excinuclease ABC subunit UvrA 0.99 PFLU_RS24490 DNA polymerase IV low > 109
Pseudomonas lactucae CFBP13502 0.99 GEMAOFIL_05194 UvrABC system protein A 0.98 GEMAOFIL_04717 DNA polymerase IV low > 93
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_2611 Excinuclease ABC subunit A 0.90 Pf1N1B4_3165 DNA polymerase IV (EC 2.7.7.7) low > 87
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_1283 Excinuclease ABC subunit A 0.74 PfGW456L13_4648 DNA polymerase IV (EC 2.7.7.7) low > 87
Pseudomonas fluorescens FW300-N2E3 0.98 AO353_06855 ABC-ATPase UvrA 0.91 AO353_16910 DNA polymerase IV low > 101
Pseudomonas fluorescens FW300-N2C3 0.97 AO356_14785 ABC-ATPase UvrA 0.90 AO356_05570 DNA polymerase IV 0.36 32
Pseudomonas fluorescens FW300-N2E2 0.97 Pf6N2E2_4888 Excinuclease ABC subunit A 0.90 Pf6N2E2_2974 DNA polymerase IV (EC 2.7.7.7) 0.22 89
Pseudomonas sp. RS175 0.97 PFR28_03974 UvrABC system protein A 0.90 PFR28_00492 DNA polymerase IV low > 88
Pseudomonas sp. DMC3 0.97 GFF3792 UvrABC system protein A 0.88 GFF2131 DNA polymerase IV low > 89
Pseudomonas syringae pv. syringae B728a 0.95 Psyr_4520 Excinuclease ABC subunit A 0.86 Psyr_1397 DNA-directed DNA polymerase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.95 Psyr_4520 Excinuclease ABC subunit A 0.86 Psyr_1397 DNA-directed DNA polymerase low > 86
Pseudomonas sp. SVBP6 0.95 COO64_RS16075 uvrA excinuclease ABC subunit UvrA 0.85 COO64_RS20030 dinB DNA polymerase IV low > 93
Pseudomonas sp. BP01 0.93 JOY50_RS20305 uvrA excinuclease ABC subunit UvrA 0.82 JOY50_RS01885 dinB DNA polymerase IV low > 84
Pseudomonas putida KT2440 0.93 PP_0483 excinuclease (uvrABC system protein A) 0.83 PP_1203 DNA polymerase IV — —
Pseudomonas sp. S08-1 0.92 OH686_15495 excinuclease ABC subunit A 0.78 OH686_18925 DNA polymerase IV low > 80
Pseudomonas aeruginosa PA14 0.91 IKLFDK_21795 excinuclease ABC subunit UvrA 0.73 IKLFDK_04145 DNA polymerase IV low > 100
Pseudomonas stutzeri RCH2 0.90 Psest_3576 excinuclease ABC, A subunit 0.77 Psest_1304 Nucleotidyltransferase/DNA polymerase involved in DNA repair low > 67
Escherichia coli ECRC101 0.77 MCAODC_03405 uvrA excinuclease ABC subunit UvrA 0.44 MCAODC_00250 dinB DNA polymerase IV low > 88
Escherichia coli ECRC98 0.77 JDDGAC_16530 uvrA excinuclease ABC subunit UvrA 0.44 JDDGAC_13355 dinB DNA polymerase IV low > 87
Escherichia coli ECRC99 0.77 KEDOAH_15255 uvrA excinuclease ABC subunit UvrA 0.44 KEDOAH_18425 dinB DNA polymerase IV — —
Escherichia fergusonii Becca 0.77 EFB2_04533 UvrABC system protein A 0.45 EFB2_03787 DNA polymerase IV low > 86
Escherichia coli ECRC102 0.77 NIAGMN_10740 uvrA excinuclease ABC subunit UvrA 0.44 NIAGMN_07590 dinB DNA polymerase IV low > 80
Escherichia coli ECRC100 0.77 OKFHMN_12895 uvrA excinuclease ABC subunit UvrA 0.44 OKFHMN_09730 dinB DNA polymerase IV low > 79
Escherichia coli ECOR38 0.77 HEPCGN_11510 uvrA excinuclease ABC subunit UvrA 0.45 HEPCGN_07825 dinB DNA polymerase IV low > 88
Escherichia coli Nissle 1917 0.77 ECOLIN_RS23485 excinuclease ABC subunit UvrA 0.45 ECOLIN_RS01780 DNA polymerase IV low > 55
Escherichia coli BW25113 0.77 b4058 uvrA excinuclease ABC subunit A (NCBI) 0.45 b0231 dinB DNA polymerase IV (NCBI) low > 76
Escherichia coli ECOR27 0.77 NOLOHH_05145 uvrA excinuclease ABC subunit UvrA 0.45 NOLOHH_02095 dinB DNA polymerase IV low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.77 OHPLBJKB_03983 UvrABC system protein A 0.44 OHPLBJKB_03407 DNA polymerase IV low > 74
Escherichia coli ECRC62 0.77 BNILDI_06380 uvrA excinuclease ABC subunit UvrA 0.44 BNILDI_00290 dinB DNA polymerase IV low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF1429 Excinuclease ABC subunit A 0.44 GFF4104 DNA polymerase IV (EC 2.7.7.7) low > 78
Escherichia coli BL21 0.77 ECD_03930 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC 0.45 ECD_00226 DNA polymerase IV low > 61
Klebsiella pneumoniae MKP103 0.77 KDGMDA_10400 excinuclease ABC subunit UvrA 0.45 KDGMDA_13790 DNA polymerase IV low > 95
Dickeya dadantii 3937 0.77 DDA3937_RS17605 excinuclease ABC subunit UvrA 0.47 DDA3937_RS16575 DNA polymerase IV low > 74
Rahnella sp. WP5 0.77 EX31_RS11990 excinuclease ABC subunit UvrA 0.46 EX31_RS21005 DNA polymerase IV low > 89
Dickeya dianthicola ME23 0.77 DZA65_RS18735 excinuclease ABC subunit UvrA 0.47 DZA65_RS17735 DNA polymerase IV low > 75
Dickeya dianthicola 67-19 0.77 HGI48_RS17610 excinuclease ABC subunit UvrA 0.47 HGI48_RS16645 DNA polymerase IV low > 71
Marinobacter adhaerens HP15 0.77 HP15_406 excinuclease ABC, ATPase subunit (A) 0.44 HP15_737 DNA polymerase IV low > 73
Enterobacter sp. TBS_079 0.76 MPMX20_00276 UvrABC system protein A 0.44 MPMX20_00921 DNA polymerase IV low > 85
Klebsiella michiganensis M5al 0.76 BWI76_RS01950 excinuclease ABC subunit A 0.45 BWI76_RS05530 DNA polymerase IV low > 92
Kangiella aquimarina DSM 16071 0.76 B158DRAFT_0885 excinuclease ABC, A subunit 0.56 B158DRAFT_1563 Nucleotidyltransferase/DNA polymerase involved in DNA repair low > 40
Pectobacterium carotovorum WPP14 0.76 HER17_RS03550 excinuclease ABC subunit UvrA 0.48 HER17_RS04670 DNA polymerase IV low > 75
Enterobacter asburiae PDN3 0.76 EX28DRAFT_4246 excinuclease ABC, A subunit 0.45 EX28DRAFT_2657 Nucleotidyltransferase/DNA polymerase involved in DNA repair low > 76
Alteromonas macleodii MIT1002 0.76 MIT1002_00179 Excinuclease ABC subunit A 0.49 MIT1002_03478 DNA polymerase IV low > 70
Pantoea agglomerans CFBP13505 P0401 0.76 PagCFBP13505_RS21140 excinuclease ABC subunit UvrA 0.43 PagCFBP13505_RS09990 DNA polymerase IV low > 74
Serratia liquefaciens MT49 0.76 IAI46_22905 excinuclease ABC subunit UvrA 0.45 IAI46_04405 DNA polymerase IV low > 86
Vibrio cholerae E7946 ATCC 55056 0.76 CSW01_02080 UvrABC system protein A 0.44 CSW01_11635 DNA polymerase IV low > 62
Pantoea sp. MT58 0.76 IAI47_17815 excinuclease ABC subunit UvrA 0.43 IAI47_15175 DNA polymerase IV low > 76
Shewanella oneidensis MR-1 0.75 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) 0.46 SO1114 dinP DNA-damage-inducible protein P (NCBI ptt file) low > 76
Erwinia amylovora T8 0.75 OLJFJH_03425 excinuclease ABC subunit UvrA 0.46 OLJFJH_18440 DNA polymerase IV low > 58
Shewanella sp. ANA-3 0.75 Shewana3_3592 excinuclease ABC subunit A (RefSeq) 0.47 Shewana3_0949 DNA polymerase IV (RefSeq) low > 73
Shewanella amazonensis SB2B 0.75 Sama_0514 excinuclease ABC, A subunit (RefSeq) 0.47 Sama_2527 DNA polymerase IV (RefSeq) low > 62
Erwinia tracheiphila SCR3 0.75 LU632_RS23685 uvrA excinuclease ABC subunit UvrA 0.42 LU632_RS01150 dinB DNA polymerase IV low > 74
Erwinia tracheiphila HP pepo 2.2 0.75 IJEDHG_11155 uvrA excinuclease ABC subunit UvrA 0.42 IJEDHG_15455 dinB DNA polymerase IV low > 61
Shewanella loihica PV-4 0.75 Shew_0533 excinuclease ABC, A subunit (RefSeq) 0.48 Shew_2871 DNA polymerase IV (RefSeq) 0.89 4
Dechlorosoma suillum PS 0.74 Dsui_1622 excinuclease ABC, A subunit 0.20 Dsui_2075 nucleotidyltransferase/DNA polymerase involved in DNA repair — —
Methylophilus sp. DMC18 0.71 GFF2008 UvrABC system protein A 0.23 GFF1254 DNA polymerase IV low > 43
Ralstonia sp. UNC404CL21Col 0.70 ABZR87_RS07120 excinuclease ABC subunit UvrA 0.54 ABZR87_RS13550 DNA polymerase IV low > 80
Herbaspirillum seropedicae SmR1 0.70 HSERO_RS19810 excinuclease ABC subunit A 0.24 HSERO_RS21635 DNA-directed DNA polymerase low > 78
Ralstonia solanacearum PSI07 0.70 RPSI07_RS22065 excinuclease ABC subunit UvrA 0.52 RPSI07_RS15755 DNA polymerase IV low > 81
Ralstonia solanacearum GMI1000 0.70 RS_RS02080 excinuclease ABC subunit UvrA 0.52 RS_RS07995 DNA polymerase IV low > 80
Ralstonia solanacearum IBSBF1503 0.70 RALBFv3_RS11235 excinuclease ABC subunit UvrA 0.52 RALBFv3_RS01730 DNA polymerase IV low > 76
Ralstonia solanacearum UW163 0.70 UW163_RS02345 excinuclease ABC subunit UvrA 0.52 UW163_RS15040 DNA polymerase IV — —
Acinetobacter baumannii LAC-4 0.69 RR41_RS01040 excinuclease ABC subunit UvrA 0.37 RR41_RS17970 DNA polymerase IV low > 55
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS02145 excinuclease ABC subunit A 0.19 RR42_RS08990 DNA polymerase low > 128
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS01825 excinuclease ABC subunit UvrA 0.21 QEN71_RS08870 DNA polymerase IV low > 153
Burkholderia phytofirmans PsJN 0.69 BPHYT_RS02970 excinuclease ABC subunit A 0.21 BPHYT_RS01275 DNA-directed DNA polymerase low > 109
Paraburkholderia graminis OAS925 0.69 ABIE53_000732 excinuclease ABC subunit A 0.21 ABIE53_005211 DNA polymerase-4 low > 113
Acinetobacter radioresistens SK82 0.69 MPMX26_02892 UvrABC system protein A 0.35 MPMX26_00130 DNA polymerase IV low > 36
Paraburkholderia bryophila 376MFSha3.1 0.69 H281DRAFT_01913 Excinuclease ABC subunit A 0.20 H281DRAFT_01439 DNA polymerase-4 low > 103
Variovorax sp. SCN45 0.66 GFF4944 Excinuclease ABC subunit A 0.21 GFF5999 DNA polymerase IV (EC 2.7.7.7) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF2755 Excinuclease ABC subunit A 0.19 GFF728 DNA polymerase IV (EC 2.7.7.7) low > 90
Variovorax sp. OAS795 0.66 ABID97_RS04340 excinuclease ABC subunit UvrA 0.21 ABID97_RS07995 DNA polymerase IV low > 91
Acidovorax sp. GW101-3H11 0.65 Ac3H11_4387 Excinuclease ABC subunit A 0.21 Ac3H11_1600 DNA polymerase IV (EC 2.7.7.7) low > 79
Castellaniella sp019104865 MT123 0.62 ABCV34_RS12715 excinuclease ABC subunit UvrA 0.21 ABCV34_RS12020 DNA polymerase IV low > 48
Rhodospirillum rubrum S1H 0.62 Rru_A1752 Excinuclease ABC, A subunit (NCBI) 0.29 Rru_A3530 DNA-directed DNA polymerase (NCBI) low > 58
Brevundimonas sp. GW460-12-10-14-LB2 0.62 A4249_RS08575 excinuclease ABC subunit UvrA 0.35 A4249_RS05230 DNA polymerase IV low > 48
Sphingobium sp. HT1-2 0.61 GFF1696 Excinuclease ABC subunit A 0.35 GFF4203 DNA polymerase IV (EC 2.7.7.7) low > 95
Azospirillum sp. SherDot2 0.61 MPMX19_01152 UvrABC system protein A 0.29 MPMX19_05504 DNA polymerase IV low > 112
Dinoroseobacter shibae DFL-12 0.61 Dshi_1809 excinuclease ABC, A subunit (RefSeq) 0.29 Dshi_0385 DNA-directed DNA polymerase (RefSeq) low > 64
Magnetospirillum magneticum AMB-1 0.60 AMB_RS12410 excinuclease ABC subunit UvrA 0.30 AMB_RS03210 DNA polymerase IV low > 64
Azospirillum brasilense Sp245 0.60 AZOBR_RS15370 excinuclease ABC subunit A 0.30 AZOBR_RS21200 DNA polymerase IV 0.44 53
Agrobacterium fabrum C58 0.60 Atu1513 ABC excinuclease subunit A 0.36 Atu5469 DNA polymerase IV low > 89
Rhizobium sp. OAE497 0.60 ABIE40_RS09360 excinuclease ABC subunit UvrA 0.32 ABIE40_RS27830 DNA polymerase IV low > 107
Sinorhizobium meliloti 1021 0.59 SMc01235 excinuclease ABC subunit A 0.37 SMa2355 DNA polymerase IV low > 103
Phaeobacter inhibens DSM 17395 0.58 PGA1_c17370 uvrABC system protein A 0.29 PGA1_c32470 DNA polymerase IV low > 62
Mycobacterium tuberculosis H37Rv 0.55 Rv1638 Probable excinuclease ABC (subunit A-DNA-binding ATPase) UvrA 0.19 Rv3056 Possible DNA-damage-inducible protein P DinP (DNA polymerase V) (pol IV 2) (DNA nucleotidyltransferase (DNA-directed)) low > 58
Fusobacterium nucleatum SB010 0.54 HUW76_06660 excinuclease ABC subunit UvrA 0.18 HUW76_04255 DNA polymerase IV low > 35
Echinicola vietnamensis KMM 6221, DSM 17526 0.51 Echvi_1138 excinuclease ABC, A subunit 0.25 Echvi_2408 Nucleotidyltransferase/DNA polymerase involved in DNA repair 0.82 8
Bacteroides ovatus ATCC 8483 0.51 BACOVA_03703 excinuclease ABC, A subunit 0.39 BACOVA_05231 putative DNA polymerase IV low > 96
Bacteroides thetaiotaomicron VPI-5482 0.51 BT0578 excinuclease ABC subunit A (NCBI ptt file) 0.36 BT4409 DNA damage-inducible protein (NCBI ptt file) low > 81
Phocaeicola dorei CL03T12C01 0.50 ABI39_RS15330 excinuclease ABC subunit UvrA 0.39 ABI39_RS09595 DNA polymerase IV low > 72
Pontibacter actiniarum KMM 6156, DSM 19842 0.50 CA264_18100 ABC-ATPase UvrA 0.38 CA264_08955 DNA polymerase IV low > 74
Phocaeicola vulgatus CL09T03C04 0.50 HMPREF1058_RS01735 excinuclease ABC subunit UvrA 0.39 HMPREF1058_RS13990 DNA polymerase IV low > 67
Parabacteroides merdae CL09T00C40 0.50 HMPREF1078_RS00835 excinuclease ABC subunit UvrA 0.38 HMPREF1078_RS15010 DNA polymerase IV low > 61
Cellulophaga baltica 18 0.49 M666_RS15455 excinuclease ABC subunit UvrA 0.37 M666_RS04050 DNA polymerase IV low > 67
Bacteroides stercoris CC31F 0.49 HMPREF1181_RS15185 excinuclease ABC subunit UvrA 0.38 HMPREF1181_RS13945 DNA polymerase IV low > 56
Pedobacter sp. GW460-11-11-14-LB5 0.49 CA265_RS25080 excinuclease ABC subunit A 0.37 CA265_RS24610 DNA polymerase IV low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.48 ABZR88_RS18670 excinuclease ABC subunit UvrA 0.37 ABZR88_RS20685 DNA polymerase IV low > 71
Desulfovibrio vulgaris Hildenborough JW710 0.47 DVU1987 uvrA excinuclease ABC, A subunit (TIGR) 0.26 DVU0071 dinP DNA polymerase IV (TIGR) low > 55

Not shown: 18 genomes with orthologs for PS417_25395 only; 1 genomes with orthologs for PS417_22830 only