| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 1.0 | GFF828 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 1.0 | GFF4234 | | Phosphate transport system regulatory protein PhoU | 0.72 | 20 |
| Acidovorax sp. GW101-3H11 | 0.58 | Ac3H11_3459 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 0.70 | Ac3H11_460 | | Phosphate transport system regulatory protein PhoU | 0.44 | 40 |
| Variovorax sp. SCN45 | 0.56 | GFF2356 | | RNase adapter protein RapZ | 0.71 | GFF1096 | | Phosphate transport system regulatory protein PhoU | low | > 127 |
| Variovorax sp. OAS795 | 0.56 | ABID97_RS23710 | | RNase adapter RapZ | 0.71 | ABID97_RS14615 | | phosphate signaling complex protein PhoU | low | > 91 |
| Herbaspirillum seropedicae SmR1 | 0.45 | HSERO_RS19535 | | nucleotide-binding protein | 0.43 | HSERO_RS06330 | | transcriptional regulator | low | > 78 |
| Castellaniella sp019104865 MT123 | 0.45 | ABCV34_RS14330 | | RNase adapter RapZ | 0.44 | ABCV34_RS02395 | | phosphate signaling complex protein PhoU | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.45 | QEN71_RS01735 | | RNase adapter RapZ | 0.58 | QEN71_RS04840 | | phosphate signaling complex protein PhoU | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.44 | BPHYT_RS02885 | | glmZ(sRNA)-inactivating NTPase | 0.58 | BPHYT_RS14125 | | transcriptional regulator | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.44 | H281DRAFT_01931 | | UPF0042 nucleotide-binding protein | 0.58 | H281DRAFT_04415 | | phosphate uptake regulator, PhoU | low | > 103 |
| Ralstonia solanacearum UW163 | 0.43 | UW163_RS02435 | | RNase adapter RapZ | 0.56 | UW163_RS15440 | | phosphate transport system regulatory protein PhoU | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.43 | RALBFv3_RS11145 | | RNase adapter RapZ | 0.56 | RALBFv3_RS02130 | | phosphate transport system regulatory protein PhoU | low | > 76 |
| Ralstonia solanacearum PSI07 | 0.43 | RPSI07_RS22155 | | RNase adapter RapZ | 0.57 | RPSI07_RS15315 | | phosphate transport system regulatory protein PhoU | low | > 81 |
| Paraburkholderia graminis OAS925 | 0.43 | ABIE53_000714 | | UPF0042 nucleotide-binding protein | 0.58 | ABIE53_002991 | | phosphate transport system protein | low | > 113 |
| Ralstonia solanacearum GMI1000 | 0.43 | RS_RS01995 | | RNase adaptor protein RapZ | 0.56 | RS_RS07690 | | phosphate transport system regulatory protein PhoU | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.42 | ABZR87_RS07035 | | RNase adapter RapZ | 0.56 | ABZR87_RS14080 | | phosphate signaling complex protein PhoU | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.42 | RR42_RS02060 | | nucleotide-binding protein | 0.57 | RR42_RS13450 | | PhoU family transcriptional regulator | low | > 128 |
| Vibrio cholerae E7946 ATCC 55056 | 0.42 | CSW01_12830 | | RNase adaptor protein RapZ | 0.39 | CSW01_03800 | | phosphate transport system regulator PhoU | — | — |
| Alteromonas macleodii MIT1002 | 0.42 | MIT1002_00824 | | glmZ(sRNA)-inactivating NTPase | 0.36 | MIT1002_00877 | | Repressor protein PhoU | low | > 70 |
| Dechlorosoma suillum PS | 0.41 | Dsui_0990 | | putative P-loop-containing kinase | 0.42 | Dsui_1573 | | phosphate transport system regulatory protein PhoU | — | — |
| Klebsiella michiganensis M5al | 0.39 | BWI76_RS25280 | | RNase adaptor protein RapZ | 0.40 | BWI76_RS00140 | | phosphate transport system regulator PhoU | low | > 92 |
| Shewanella oneidensis MR-1 | 0.39 | SO3964 | | conserved hypothetical protein (NCBI ptt file) | 0.41 | SO1726 | phoU | phosphate transport system regulatory protein PhoU (NCBI ptt file) | — | — |
| Shewanella sp. ANA-3 | 0.39 | Shewana3_0669 | | hypothetical protein (RefSeq) | 0.42 | Shewana3_2731 | | transcriptional regulator PhoU (RefSeq) | — | — |
| Serratia liquefaciens MT49 | 0.39 | IAI46_22485 | | RNase adapter RapZ | 0.40 | IAI46_25195 | | phosphate signaling complex protein PhoU | low | > 86 |
| Dickeya dianthicola 67-19 | 0.39 | HGI48_RS01430 | | RNase adapter RapZ | 0.40 | HGI48_RS21580 | | phosphate signaling complex protein PhoU | — | — |
| Dickeya dianthicola ME23 | 0.39 | DZA65_RS01495 | | RNase adapter RapZ | 0.40 | DZA65_RS22560 | | phosphate signaling complex protein PhoU | — | — |
| Dickeya dadantii 3937 | 0.39 | DDA3937_RS01515 | | RNase adapter RapZ | 0.40 | DDA3937_RS21450 | | phosphate signaling complex protein PhoU | — | — |
| Escherichia coli BL21 | 0.39 | ECD_03070 | | adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase | 0.40 | ECD_03608 | | negative regulator of PhoR/PhoB two-component regulator | — | — |
| Rahnella sp. WP5 | 0.39 | EX31_RS12385 | | RNase adapter RapZ | 0.41 | EX31_RS06050 | | phosphate signaling complex protein PhoU | — | — |
| Escherichia coli ECRC101 | 0.39 | OKFHMN_17925 | rapZ | RNase adapter RapZ | 0.40 | OKFHMN_14900 | phoU | phosphate signaling complex protein PhoU | — | — |
| Escherichia coli ECRC102 | 0.39 | NIAGMN_15685 | rapZ | RNase adapter RapZ | 0.40 | NIAGMN_12655 | phoU | phosphate signaling complex protein PhoU | — | — |
| Escherichia coli BW25113 | 0.39 | b3205 | yhbJ | hypothetical protein (NCBI) | 0.40 | b3724 | phoU | negative regulator of PhoR/PhoB two-component regulator (NCBI) | — | — |
| Escherichia coli ECRC98 | 0.39 | JDDGAC_21550 | rapZ | RNase adapter RapZ | 0.40 | JDDGAC_18520 | phoU | phosphate signaling complex protein PhoU | — | — |
| Escherichia coli ECRC101 | 0.39 | MCAODC_08445 | rapZ | RNase adapter RapZ | 0.40 | MCAODC_05405 | phoU | phosphate signaling complex protein PhoU | — | — |
| Escherichia coli ECOR38 | 0.39 | HEPCGN_16800 | rapZ | RNase adapter RapZ | 0.40 | HEPCGN_13610 | phoU | phosphate signaling complex protein PhoU | — | — |
| Escherichia coli ECOR27 | 0.39 | NOLOHH_09725 | rapZ | RNase adapter RapZ | 0.40 | NOLOHH_07030 | pstA | phosphate ABC transporter permease PstA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.39 | OHPLBJKB_00495 | | RNase adapter protein RapZ | 0.40 | OHPLBJKB_04329 | | Phosphate-specific transport system accessory protein PhoU | — | — |
| Escherichia fergusonii Becca | 0.39 | EFB2_00618 | | RNase adapter protein RapZ | 0.40 | EFB2_04909 | | Phosphate-specific transport system accessory protein PhoU | — | — |
| Escherichia coli Nissle 1917 | 0.39 | ECOLIN_RS18440 | | RNase adapter RapZ | 0.40 | ECOLIN_RS21430 | | phosphate signaling complex protein PhoU | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.39 | GFF2949 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 0.40 | GFF1738 | | Phosphate transport system regulatory protein PhoU | — | — |
| Escherichia coli ECRC99 | 0.39 | KEDOAH_10225 | rapZ | RNase adapter RapZ | 0.40 | KEDOAH_13250 | phoU | phosphate signaling complex protein PhoU | — | — |
| Escherichia coli ECRC62 | 0.39 | BNILDI_01810 | rapZ | RNase adapter RapZ | 0.40 | BNILDI_04495 | pstA | phosphate ABC transporter permease PstA | — | — |
| Enterobacter sp. TBS_079 | 0.39 | MPMX20_04111 | | RNase adapter protein RapZ | 0.40 | MPMX20_04643 | | Phosphate-specific transport system accessory protein PhoU | — | — |
| Enterobacter asburiae PDN3 | 0.39 | EX28DRAFT_3259 | | Predicted P-loop-containing kinase | 0.40 | EX28DRAFT_4000 | | phosphate transport system regulatory protein PhoU | — | — |
| Erwinia tracheiphila SCR3 | 0.39 | LU632_RS21295 | rapZ | RNase adapter RapZ | 0.39 | LU632_RS24900 | phoU | phosphate signaling complex protein PhoU | — | — |
| Pectobacterium carotovorum WPP14 | 0.39 | HER17_RS20075 | | RNase adapter RapZ | 0.41 | HER17_RS21695 | | phosphate signaling complex protein PhoU | — | — |
| Shewanella loihica PV-4 | 0.39 | Shew_3314 | | hypothetical protein (RefSeq) | 0.41 | Shew_1701 | | transcriptional regulator PhoU (RefSeq) | — | — |
| Pseudomonas sp. S08-1 | 0.38 | OH686_08560 | | RNase adapter protein RapZ | 0.44 | OH686_13430 | | phosphate transport system regulatory protein PhoU | low | > 80 |
| Pantoea sp. MT58 | 0.38 | IAI47_17200 | | RNase adapter RapZ | 0.40 | IAI47_00215 | | phosphate signaling complex protein PhoU | — | — |
| Shewanella amazonensis SB2B | 0.38 | Sama_3091 | | hypothetical protein (RefSeq) | 0.42 | Sama_1411 | | transcriptional regulator PhoU (RefSeq) | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.38 | ABZR86_RS19800 | | RNase adapter RapZ | 0.32 | ABZR86_RS08250 | | phosphate signaling complex protein PhoU | low | > 74 |
| Rhodanobacter denitrificans FW104-10B01 | 0.38 | LRK54_RS12860 | | RNase adapter RapZ | 0.32 | LRK54_RS00475 | | phosphate signaling complex protein PhoU | — | — |
| Rhodanobacter denitrificans MT42 | 0.38 | LRK55_RS12560 | | RNase adapter RapZ | 0.32 | LRK55_RS00215 | | phosphate signaling complex protein PhoU | low | > 63 |
| Pseudomonas fluorescens SBW25 | 0.38 | PFLU_RS04385 | | RNase adapter RapZ | 0.44 | PFLU_RS29750 | | phosphate signaling complex protein PhoU | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.38 | PFLU_RS04385 | | RNase adapter RapZ | 0.44 | PFLU_RS29750 | | phosphate signaling complex protein PhoU | low | > 109 |
| Rhodanobacter sp. FW510-T8 | 0.38 | OKGIIK_02250 | rapZ | RNase adapter RapZ | 0.33 | OKGIIK_06835 | phoU | phosphate signaling complex protein PhoU | — | — |
| Pseudomonas simiae WCS417 | 0.38 | PS417_04330 | | glmZ(sRNA)-inactivating NTPase | 0.44 | PS417_28065 | | transcriptional regulator PhoU | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.37 | Pf1N1B4_1083 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 0.44 | Pf1N1B4_2038 | | Phosphate transport system regulatory protein PhoU | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.37 | Xcc-8004.1658.1 | | hypothetical protein | 0.29 | Xcc-8004.3364.1 | | Phosphate transport system regulatory protein PhoU | low | > 74 |
| Pseudomonas fluorescens FW300-N2C3 | 0.37 | AO356_07050 | | glmZ(sRNA)-inactivating NTPase | 0.44 | AO356_11025 | | transcriptional regulator PhoU | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.37 | Pf6N2E2_3270 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 0.44 | Pf6N2E2_4071 | | Phosphate transport system regulatory protein PhoU | low | > 103 |
| Pseudomonas fluorescens FW300-N2E3 | 0.37 | AO353_05195 | | glmZ(sRNA)-inactivating NTPase | 0.44 | AO353_09885 | | transcriptional regulator PhoU | low | > 101 |
| Pseudomonas stutzeri RCH2 | 0.37 | Psest_3316 | | Predicted P-loop-containing kinase | 0.44 | Psest_0223 | | phosphate transport system regulatory protein PhoU | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.37 | PfGW456L13_5017 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 0.44 | PfGW456L13_757 | | Phosphate transport system regulatory protein PhoU | low | > 87 |
| Pseudomonas putida KT2440 | 0.37 | PP_0949 | | putative ATP-binding protein UPF0042 | 0.44 | PP_5325 | | phosphate transport-associated protein | — | — |
| Pseudomonas sp. RS175 | 0.36 | PFR28_00170 | | RNase adapter protein RapZ | 0.44 | PFR28_04485 | | Phosphate-specific transport system accessory protein PhoU | 0.41 | 58 |
| Lysobacter sp. OAE881 | 0.36 | ABIE51_RS15975 | | RNase adapter RapZ | 0.28 | ABIE51_RS07525 | | phosphate signaling complex protein PhoU | low | > 62 |
| Acinetobacter radioresistens SK82 | 0.35 | MPMX26_00547 | | RNase adapter protein RapZ | 0.39 | MPMX26_00183 | | Phosphate-specific transport system accessory protein PhoU | low | > 36 |
| Pseudomonas syringae pv. syringae B728a | 0.35 | Psyr_4150 | | Uncharacterized P-loop ATPase protein UPF0042 | 0.45 | Psyr_5037 | | phosphate uptake regulator, PhoU | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.35 | Psyr_4150 | | Uncharacterized P-loop ATPase protein UPF0042 | 0.45 | Psyr_5037 | | phosphate uptake regulator, PhoU | — | — |
| Kangiella aquimarina DSM 16071 | 0.35 | B158DRAFT_2077 | | Predicted P-loop-containing kinase | 0.39 | B158DRAFT_0894 | | phosphate uptake regulator, PhoU | low | > 40 |
| Marinobacter adhaerens HP15 | 0.34 | HP15_2445 | | protein yhbJ | 0.42 | HP15_3385 | | phosphate uptake regulator, PhoU | — | — |
| Rhodospirillum rubrum S1H | 0.32 | Rru_A3448 | | Uncharacterized P-loop ATPase protein UPF0042 (NCBI) | 0.32 | Rru_A0602 | | Phosphate uptake regulator, PhoU (NCBI) | low | > 58 |
| Mycobacterium tuberculosis H37Rv | 0.31 | Rv1421 | | Conserved protein | 0.13 | Rv3301c | | Probable phosphate-transport system transcriptional regulatory protein PhoU homolog 1 PhoY1 | low | > 58 |
| Magnetospirillum magneticum AMB-1 | 0.31 | AMB_RS22235 | | RNase adaptor protein RapZ | 0.27 | AMB_RS06940 | | phosphate transport system regulatory protein PhoU | low | > 64 |
| Azospirillum brasilense Sp245 | 0.30 | AZOBR_RS30485 | | nucleotide-binding protein | 0.29 | AZOBR_RS08185 | | PhoU family transcriptional regulator | low | > 97 |
| Bifidobacterium breve UCC2003 | 0.29 | BBR_RS15525 | | RNase adapter RapZ | 0.16 | BBR_RS18585 | | phosphate transport system regulatory protein PhoU | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.29 | DvMF_0424 | | hypothetical protein (RefSeq) | 0.22 | DvMF_0880 | | phosphate uptake regulator, PhoU (RefSeq) | low | > 51 |
| Dinoroseobacter shibae DFL-12 | 0.28 | Dshi_0209 | | hypothetical protein (RefSeq) | 0.33 | Dshi_1537 | | phosphate uptake regulator, PhoU (RefSeq) | low | > 64 |
| Phaeobacter inhibens DSM 17395 | 0.27 | PGA1_c01180 | | Predicted P-loop-containing kinase | 0.33 | PGA1_c15740 | | phosphate transport system protein PhoU | low | > 62 |
| Sphingomonas koreensis DSMZ 15582 | 0.27 | Ga0059261_0917 | | Predicted P-loop-containing kinase | 0.25 | Ga0059261_3652 | | phosphate transport system regulatory protein PhoU | low | > 68 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.26 | DVU1631 | | conserved hypothetical protein (TIGR) | 0.21 | DVU1085 | phoU | phosphate transport system protein PhoU (TIGR) | low | > 55 |
Not shown: 1 genomes with orthologs for GFF828 only; 19 genomes with orthologs for GFF4234 only