| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 1.0 | GFF4044 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 1.0 | GFF4211 | | Dihydroorotate dehydrogenase (EC 1.3.3.1) | 0.72 | 20 |
| Acidovorax sp. GW101-3H11 | 0.86 | Ac3H11_937 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.74 | Ac3H11_4100 | | Dihydroorotate dehydrogenase (EC 1.3.3.1) | — | — |
| Variovorax sp. OAS795 | 0.83 | ABID97_RS17590 | | endopeptidase La | 0.74 | ABID97_RS14065 | | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Variovorax sp. SCN45 | 0.82 | GFF487 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.73 | GFF960 | | Dihydroorotate dehydrogenase (quinone) (EC 1.3.5.2) | — | — |
| Ralstonia sp. UNC404CL21Col | 0.77 | ABZR87_RS12785 | | endopeptidase La | 0.56 | ABZR87_RS13360 | | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Ralstonia solanacearum PSI07 | 0.77 | RPSI07_RS16135 | | endopeptidase La | 0.55 | RPSI07_RS15920 | | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.77 | QEN71_RS21975 | | endopeptidase La | 0.53 | QEN71_RS22765 | | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.76 | RALBFv3_RS01340 | | endopeptidase La | 0.55 | RALBFv3_RS01570 | | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Ralstonia solanacearum UW163 | 0.76 | UW163_RS14650 | | endopeptidase La | 0.55 | UW163_RS14880 | | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Ralstonia solanacearum GMI1000 | 0.76 | RS_RS08655 | | endopeptidase La | 0.55 | RS_RS08160 | | dihydroorotate dehydrogenase (quinone) | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.76 | H281DRAFT_00898 | | ATP-dependent proteinase. Serine peptidase. MEROPS family S16 | 0.51 | H281DRAFT_00743 | | dihydroorotate oxidase A | — | — |
| Burkholderia phytofirmans PsJN | 0.76 | BPHYT_RS09460 | | peptidase | 0.53 | BPHYT_RS08565 | | dihydroorotate dehydrogenase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.76 | HSERO_RS12905 | | peptidase | 0.55 | HSERO_RS16155 | | dihydroorotate dehydrogenase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.76 | RR42_RS09030 | | DNA-binding protein | 0.53 | RR42_RS07465 | | dihydroorotate dehydrogenase | — | — |
| Castellaniella sp019104865 MT123 | 0.74 | ABCV34_RS05125 | | endopeptidase La | 0.54 | ABCV34_RS07790 | | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Paraburkholderia graminis OAS925 | 0.74 | ABIE53_002117 | | ATP-dependent Lon protease | 0.53 | ABIE53_001954 | | dihydroorotate dehydrogenase | — | — |
| Dechlorosoma suillum PS | 0.72 | Dsui_2198 | | ATP-dependent protease La | 0.51 | Dsui_2978 | | dihydroorotate dehydrogenase, subfamily 2 | — | — |
| Klebsiella michiganensis M5al | 0.66 | BWI76_RS06535 | | endopeptidase La | 0.45 | BWI76_RS09910 | | dihydroorotate dehydrogenase (quinone) | low | > 92 |
| Dickeya dadantii 3937 | 0.66 | DDA3937_RS05650 | | endopeptidase La | 0.46 | DDA3937_RS12855 | | quinone-dependent dihydroorotate dehydrogenase | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.66 | HER17_RS15840 | | endopeptidase La | 0.47 | HER17_RS12005 | | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Dickeya dianthicola ME23 | 0.66 | DZA65_RS06020 | | endopeptidase La | 0.46 | DZA65_RS13390 | | quinone-dependent dihydroorotate dehydrogenase | low | > 75 |
| Dickeya dianthicola 67-19 | 0.66 | HGI48_RS05695 | | endopeptidase La | 0.46 | HGI48_RS12925 | | quinone-dependent dihydroorotate dehydrogenase | low | > 71 |
| Erwinia tracheiphila SCR3 | 0.66 | LU632_RS18335 | lon | endopeptidase La | 0.46 | LU632_RS09955 | pyrD | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Shewanella loihica PV-4 | 0.66 | Shew_2506 | | ATP-dependent protease La (RefSeq) | 0.48 | Shew_1810 | | dihydroorotate dehydrogenase 2 (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.66 | SO1796 | lon | ATP-dependent protease La (NCBI ptt file) | 0.47 | SO2592 | pyrD | dihydroorotate dehydrogenase (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.65 | Shewana3_2659 | | Lon-A peptidase (RefSeq) | 0.47 | Shewana3_1786 | | dihydroorotate dehydrogenase 2 (RefSeq) | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.65 | GFF4355 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.44 | GFF3236 | | Dihydroorotate dehydrogenase (EC 1.3.3.1) | low | > 78 |
| Enterobacter sp. TBS_079 | 0.65 | MPMX20_01030 | | Lon protease | 0.45 | MPMX20_01596 | | Dihydroorotate dehydrogenase (quinone) | 0.74 | 16 |
| Escherichia coli ECRC101 | 0.65 | MCAODC_27545 | | Lon protease | 0.44 | MCAODC_24685 | pyrD | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Escherichia coli ECRC101 | 0.65 | OKFHMN_08320 | | Lon protease | 0.44 | OKFHMN_05295 | pyrD | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Enterobacter asburiae PDN3 | 0.65 | EX28DRAFT_2531 | | endopeptidase La | 0.45 | EX28DRAFT_1998 | | dihydroorotate oxidase A (EC 1.3.3.1) | — | — |
| Escherichia coli ECRC99 | 0.65 | KEDOAH_19645 | | Lon protease | 0.44 | KEDOAH_22440 | pyrD | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Escherichia coli ECRC98 | 0.65 | JDDGAC_11975 | | Lon protease | 0.44 | JDDGAC_08905 | pyrD | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Serratia liquefaciens MT49 | 0.65 | IAI46_05020 | | endopeptidase La | 0.46 | IAI46_08805 | | quinone-dependent dihydroorotate dehydrogenase | low | > 86 |
| Escherichia coli ECRC102 | 0.65 | NIAGMN_06375 | | Lon protease | 0.44 | NIAGMN_03015 | pyrD | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.65 | AO356_01740 | | DNA-binding protein | 0.47 | AO356_02610 | | dihydroorotate dehydrogenase (quinone) | — | — |
| Pseudomonas sp. RS175 | 0.65 | PFR28_01230 | | Lon protease | 0.48 | PFR28_01054 | | Dihydroorotate dehydrogenase (quinone) | — | — |
| Alteromonas macleodii MIT1002 | 0.65 | MIT1002_02757 | | Lon protease | 0.49 | MIT1002_02035 | | Dihydroorotate dehydrogenase (quinone) | low | > 70 |
| Escherichia coli ECOR27 | 0.65 | NOLOHH_01255 | lon_P403L | Lon protease | 0.44 | NOLOHH_21850 | pyrD | quinone-dependent dihydroorotate dehydrogenase | low | > 57 |
| Escherichia coli ECOR38 | 0.65 | HEPCGN_06935 | lon_P403L | Lon protease | 0.44 | HEPCGN_23225 | pyrD | quinone-dependent dihydroorotate dehydrogenase | low | > 85 |
| Pseudomonas fluorescens FW300-N2E2 | 0.65 | Pf6N2E2_2216 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.47 | Pf6N2E2_2347 | | Dihydroorotate dehydrogenase (EC 1.3.3.1) | — | — |
| Escherichia coli ECRC62 | 0.65 | BNILDI_22670 | lon_P403L | Lon protease | 0.44 | BNILDI_20015 | pyrD | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Escherichia coli BL21 | 0.65 | ECD_00391 | | DNA-binding ATP-dependent protease La | 0.44 | ECD_00949 | | dihydro-orotate oxidase, FMN-linked | low | > 60 |
| Escherichia coli BW25113 | 0.65 | b0439 | lon | DNA-binding ATP-dependent protease La (NCBI) | 0.44 | b0945 | pyrD | dihydroorotate dehydrogenase (NCBI) | 0.42 | 45 |
| Escherichia coli Nissle 1917 | 0.65 | ECOLIN_RS02635 | | endopeptidase La | 0.44 | ECOLIN_RS04965 | | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.65 | OHPLBJKB_03234 | | Lon protease | 0.44 | OHPLBJKB_02721 | | Dihydroorotate dehydrogenase (quinone) | low | > 73 |
| Escherichia fergusonii Becca | 0.65 | EFB2_03618 | | Lon protease | 0.44 | EFB2_03126 | | Dihydroorotate dehydrogenase (quinone) | low | > 86 |
| Vibrio cholerae E7946 ATCC 55056 | 0.65 | CSW01_09605 | | endopeptidase La | 0.46 | CSW01_07490 | | dihydroorotate dehydrogenase (quinone) | low | > 62 |
| Pseudomonas fluorescens GW456-L13 | 0.65 | PfGW456L13_2554 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.48 | PfGW456L13_4095 | | Dihydroorotate dehydrogenase (EC 1.3.3.1) | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.65 | PFLU_RS19160 | | endopeptidase La | 0.48 | PFLU_RS22550 | | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Pseudomonas simiae WCS417 | 0.65 | PS417_17225 | | DNA-binding protein | 0.48 | PS417_20935 | | dihydroorotate dehydrogenase | — | — |
| Pseudomonas fluorescens SBW25 | 0.65 | PFLU_RS19160 | | endopeptidase La | 0.48 | PFLU_RS22550 | | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.65 | Psyr_1749 | | ATP-dependent proteinase, Serine peptidase, MEROPS family S16 | 0.49 | Psyr_2106 | | dihydroorotate oxidase A | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.65 | Pf1N1B4_3947 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.47 | Pf1N1B4_3842 | | Dihydroorotate dehydrogenase (EC 1.3.3.1) | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.65 | Psyr_1749 | | ATP-dependent proteinase, Serine peptidase, MEROPS family S16 | 0.49 | Psyr_2106 | | dihydroorotate oxidase A | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.65 | AO353_20185 | | DNA-binding protein | 0.47 | AO353_00780 | | dihydroorotate dehydrogenase (quinone) | — | — |
| Pantoea sp. MT58 | 0.65 | IAI47_14645 | | endopeptidase La | 0.48 | IAI47_12705 | | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Kangiella aquimarina DSM 16071 | 0.65 | B158DRAFT_1038 | | ATP-dependent protease La | 0.46 | B158DRAFT_2228 | | dihydroorotate oxidase A (EC 1.3.3.1) | — | — |
| Shewanella amazonensis SB2B | 0.65 | Sama_1226 | | endopeptidase La (RefSeq) | 0.46 | Sama_1593 | | dihydroorotate dehydrogenase 2 (RefSeq) | low | > 62 |
| Rahnella sp. WP5 | 0.65 | EX31_RS22255 | | endopeptidase La | 0.46 | EX31_RS18095 | | quinone-dependent dihydroorotate dehydrogenase | low | > 89 |
| Pseudomonas stutzeri RCH2 | 0.64 | Psest_2285 | | ATP-dependent protease La | 0.48 | Psest_1947 | | dihydroorotate dehydrogenase, subfamily 2 | low | > 67 |
| Pseudomonas putida KT2440 | 0.64 | PP_2302 | | DNA-binding, ATP-dependent protease | 0.48 | PP_2095 | | Dihydroorotate dehydrogenase (quinone) | — | — |
| Pseudomonas sp. S08-1 | 0.63 | OH686_03635 | | endopeptidase La | 0.46 | OH686_03120 | | dihydroorotate dehydrogenase (fumarate) | — | — |
| Marinobacter adhaerens HP15 | 0.63 | HP15_2183 | | DNA-binding ATP-dependent protease La | 0.45 | HP15_1377 | | dihydroorotate dehydrogenase | low | > 73 |
| Magnetospirillum magneticum AMB-1 | 0.63 | AMB_RS14035 | | endopeptidase La | 0.32 | AMB_RS19685 | | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Azospirillum sp. SherDot2 | 0.63 | MPMX19_01545 | | Lon protease | 0.35 | MPMX19_02083 | | Dihydroorotate dehydrogenase (quinone) | — | — |
| Lysobacter sp. OAE881 | 0.63 | ABIE51_RS14145 | | endopeptidase La | 0.46 | ABIE51_RS13725 | | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Rhodospirillum rubrum S1H | 0.62 | Rru_A1552 | | Peptidase S16, ATP-dependent protease La (NCBI) | 0.33 | Rru_A0514 | | Dihydroorotate dehydrogenase 2 (NCBI) | low | > 58 |
| Azospirillum brasilense Sp245 | 0.62 | AZOBR_RS07145 | | peptidase | 0.36 | AZOBR_RS13520 | | dihydroorotate dehydrogenase | 0.51 | 30 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.62 | Xcc-8004.4046.1 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.46 | Xcc-8004.3032.1 | | Dihydroorotate dehydrogenase (EC 1.3.3.1) | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.62 | ABZR86_RS07320 | | endopeptidase La | 0.46 | ABZR86_RS07450 | | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.61 | LRK54_RS16735 | | endopeptidase La | 0.44 | LRK54_RS15985 | | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Rhodanobacter denitrificans MT42 | 0.61 | LRK55_RS16460 | | endopeptidase La | 0.45 | LRK55_RS15740 | | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Rhodanobacter sp. FW510-T8 | 0.60 | OKGIIK_08030 | lon | endopeptidase La | 0.44 | OKGIIK_09010 | pyrD | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Caulobacter crescentus NA1000 | 0.60 | CCNA_02037 | | ATP-dependent endopeptidase Lon | 0.32 | CCNA_00562 | | dihydroorotate dehydrogenase | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.60 | CCNA_02037 | | ATP-dependent endopeptidase Lon | 0.32 | CCNA_00562 | | dihydroorotate dehydrogenase | — | — |
| Agrobacterium fabrum C58 | 0.60 | Atu1261 | | ATP-dependent protease LA | 0.39 | Atu0486 | | dihydroorotate dehydrogenase | — | — |
| Rhizobium sp. OAE497 | 0.59 | ABIE40_RS07100 | | endopeptidase La | 0.35 | ABIE40_RS02420 | | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Bosea sp. OAE506 | 0.59 | ABIE41_RS18050 | | endopeptidase La | 0.32 | ABIE41_RS24065 | | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Sinorhizobium meliloti 1021 | 0.59 | SMc01905 | | ATP-dependent protease LA protein | 0.37 | SMc02245 | | dihydroorotate dehydrogenase 2 | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.59 | A4249_RS06460 | | endopeptidase La | 0.34 | A4249_RS00280 | | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Rhodopseudomonas palustris CGA009 | 0.59 | TX73_015345 | | endopeptidase La | 0.30 | TX73_004110 | | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.58 | Ga0059261_0102 | | endopeptidase La | 0.34 | Ga0059261_1468 | | dihydroorotate oxidase A (EC 1.3.3.1) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.58 | PGA1_c20540 | | ATP-dependent protease La | 0.35 | PGA1_c12150 | | dihydroorotate dehydrogenase PyrD | — | — |
| Dinoroseobacter shibae DFL-12 | 0.56 | Dshi_1777 | | ATP-dependent protease La (RefSeq) | 0.33 | Dshi_0847 | | Dihydroorotate oxidase (RefSeq) | low | > 64 |
| Acinetobacter radioresistens SK82 | 0.53 | MPMX26_02299 | | Lon protease | 0.47 | MPMX26_01120 | | Dihydroorotate dehydrogenase (quinone) | low | > 36 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.42 | ABZR88_RS15670 | | endopeptidase La | 0.37 | ABZR88_RS12040 | | quinone-dependent dihydroorotate dehydrogenase | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.41 | CA264_00045 | | endopeptidase La | 0.38 | CA264_00865 | | dihydroorotate dehydrogenase (quinone) | low | > 74 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.40 | CA265_RS14555 | | endopeptidase La | 0.37 | CA265_RS14005 | | dihydroorotate dehydrogenase (quinone) | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.40 | Echvi_4670 | | ATP-dependent protease La | 0.40 | Echvi_1806 | | dihydroorotate dehydrogenase, subfamily 2 | — | — |
Not shown: 8 genomes with orthologs for GFF4044 only; 6 genomes with orthologs for GFF4211 only