Conservation of cofitness between Psest_2285 and Psest_4219 in Pseudomonas stutzeri RCH2

92 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_2285 ATP-dependent protease La 1.0 Psest_4219 DNA polymerase I 0.29 13
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_2554 ATP-dependent protease La (EC 3.4.21.53) Type I 0.71 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) low > 87
Pseudomonas sp. RS175 0.91 PFR28_01230 Lon protease 0.73 PFR28_04624 DNA polymerase I low > 88
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_2216 ATP-dependent protease La (EC 3.4.21.53) Type I 0.74 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas fluorescens FW300-N2C3 0.91 AO356_01740 DNA-binding protein 0.74 AO356_11465 DNA polymerase I low > 104
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_20185 DNA-binding protein 0.75 AO353_10930 DNA polymerase I 0.40 9
Pseudomonas fluorescens FW300-N1B4 0.91 Pf1N1B4_3947 ATP-dependent protease La (EC 3.4.21.53) Type I 0.74 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas simiae WCS417 0.90 PS417_17225 DNA-binding protein 0.72 PS417_00405 DNA polymerase I — —
Pseudomonas fluorescens SBW25 0.90 PFLU_RS19160 endopeptidase La 0.72 PFLU_RS00395 DNA polymerase I 0.67 56
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS19160 endopeptidase La 0.72 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas sp. S08-1 0.90 OH686_03635 endopeptidase La 0.78 OH686_12215 DNA polymerase I 0.74 5
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_1749 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 0.74 Psyr_0270 DNA polymerase I low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_1749 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 0.74 Psyr_0270 DNA polymerase I low > 86
Pseudomonas putida KT2440 0.88 PP_2302 DNA-binding, ATP-dependent protease 0.75 PP_0123 DNA polymerase I, 5 0.40 7
Marinobacter adhaerens HP15 0.71 HP15_2183 DNA-binding ATP-dependent protease La 0.55 HP15_293 DNA polymerase I low > 73
Shewanella loihica PV-4 0.70 Shew_2506 ATP-dependent protease La (RefSeq) 0.59 Shew_3714 DNA polymerase I (RefSeq) — —
Shewanella oneidensis MR-1 0.70 SO1796 lon ATP-dependent protease La (NCBI ptt file) 0.60 SO4669 polA DNA polymerase I (NCBI ptt file) — —
Shewanella sp. ANA-3 0.70 Shewana3_2659 Lon-A peptidase (RefSeq) 0.60 Shewana3_4109 DNA polymerase I (RefSeq) — —
Dickeya dadantii 3937 0.69 DDA3937_RS05650 endopeptidase La 0.60 DDA3937_RS00105 DNA polymerase I — —
Dickeya dianthicola ME23 0.69 DZA65_RS06020 endopeptidase La 0.60 DZA65_RS22235 DNA polymerase I — —
Dickeya dianthicola 67-19 0.69 HGI48_RS05695 endopeptidase La 0.60 HGI48_RS21260 DNA polymerase I — —
Klebsiella michiganensis M5al 0.69 BWI76_RS06535 endopeptidase La 0.60 BWI76_RS00355 DNA polymerase I low > 92
Serratia liquefaciens MT49 0.69 IAI46_05020 endopeptidase La 0.61 IAI46_24985 DNA polymerase I 0.43 79
Pectobacterium carotovorum WPP14 0.69 HER17_RS15840 endopeptidase La 0.61 HER17_RS21470 DNA polymerase I — —
Rahnella sp. WP5 0.69 EX31_RS22255 endopeptidase La 0.61 EX31_RS15905 DNA polymerase I low > 89
Shewanella amazonensis SB2B 0.69 Sama_1226 endopeptidase La (RefSeq) 0.61 Sama_0093 DNA-directed DNA polymerase (RefSeq) low > 62
Enterobacter sp. TBS_079 0.68 MPMX20_01030 Lon protease 0.60 MPMX20_04601 DNA polymerase I low > 85
Enterobacter asburiae PDN3 0.68 EX28DRAFT_2531 endopeptidase La 0.60 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) — —
Erwinia tracheiphila SCR3 0.68 LU632_RS18335 lon endopeptidase La 0.61 LU632_RS23870 polA DNA polymerase I — —
Alteromonas macleodii MIT1002 0.68 MIT1002_02757 Lon protease 0.61 MIT1002_00014 DNA polymerase I low > 70
Escherichia coli HS(pFamp)R (ATCC 700891) 0.68 OHPLBJKB_03234 Lon protease 0.60 OHPLBJKB_04189 DNA polymerase I — —
Escherichia coli Nissle 1917 0.68 ECOLIN_RS02635 endopeptidase La 0.60 ECOLIN_RS22270 DNA polymerase I — —
Escherichia coli BL21 0.68 ECD_00391 DNA-binding ATP-dependent protease La 0.61 ECD_03749 5 — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.68 GFF4355 ATP-dependent protease La (EC 3.4.21.53) Type I 0.60 GFF2216 DNA polymerase I (EC 2.7.7.7) low > 78
Escherichia coli ECOR27 0.68 NOLOHH_01255 lon_P403L Lon protease 0.61 NOLOHH_06280 polA DNA polymerase I — —
Escherichia coli BW25113 0.68 b0439 lon DNA-binding ATP-dependent protease La (NCBI) 0.61 b3863 polA DNA polymerase I (NCBI) low > 76
Escherichia coli ECOR38 0.68 HEPCGN_06935 lon_P403L Lon protease 0.60 HEPCGN_12785 polA DNA polymerase I — —
Vibrio cholerae E7946 ATCC 55056 0.68 CSW01_09605 endopeptidase La 0.60 CSW01_00560 DNA polymerase I low > 62
Pantoea sp. MT58 0.68 IAI47_14645 endopeptidase La 0.61 IAI47_00430 DNA polymerase I — —
Escherichia coli ECRC62 0.68 BNILDI_22670 lon_P403L Lon protease 0.60 BNILDI_05250 polA DNA polymerase I — —
Escherichia coli ECRC101 0.68 OKFHMN_08320 Lon protease 0.61 OKFHMN_14150 polA DNA polymerase I — —
Escherichia coli ECRC99 0.68 KEDOAH_19645 Lon protease 0.61 KEDOAH_14000 polA DNA polymerase I — —
Escherichia coli ECRC101 0.68 MCAODC_27545 Lon protease 0.61 MCAODC_04650 polA DNA polymerase I — —
Ralstonia sp. UNC404CL21Col 0.68 ABZR87_RS12785 endopeptidase La 0.51 ABZR87_RS15680 DNA polymerase I low > 80
Escherichia coli ECRC98 0.68 JDDGAC_11975 Lon protease 0.61 JDDGAC_17775 polA DNA polymerase I — —
Escherichia fergusonii Becca 0.68 EFB2_03618 Lon protease 0.60 EFB2_04753 DNA polymerase I — —
Escherichia coli ECRC102 0.68 NIAGMN_06375 Lon protease 0.61 NIAGMN_11905 polA DNA polymerase I — —
Ralstonia solanacearum IBSBF1503 0.67 RALBFv3_RS01340 endopeptidase La 0.50 RALBFv3_RS03750 DNA polymerase I — —
Ralstonia solanacearum UW163 0.67 UW163_RS14650 endopeptidase La 0.50 UW163_RS09920 DNA polymerase I — —
Ralstonia solanacearum PSI07 0.67 RPSI07_RS16135 endopeptidase La 0.51 RPSI07_RS13480 DNA polymerase I — —
Ralstonia solanacearum GMI1000 0.67 RS_RS08655 endopeptidase La 0.50 RS_RS11195 DNA polymerase I — —
Paraburkholderia sabiae LMG 24235 0.67 QEN71_RS21975 endopeptidase La 0.52 QEN71_RS17885 DNA polymerase I — —
Kangiella aquimarina DSM 16071 0.66 B158DRAFT_1038 ATP-dependent protease La 0.59 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) low > 40
Dyella japonica UNC79MFTsu3.2 0.66 ABZR86_RS07320 endopeptidase La 0.54 ABZR86_RS17015 DNA polymerase I low > 74
Rhodanobacter sp. FW510-T8 0.66 OKGIIK_08030 lon endopeptidase La 0.55 OKGIIK_16785 polA DNA polymerase I low > 52
Lysobacter sp. OAE881 0.66 ABIE51_RS14145 endopeptidase La 0.52 ABIE51_RS02010 DNA polymerase I low > 62
Paraburkholderia bryophila 376MFSha3.1 0.66 H281DRAFT_00898 ATP-dependent proteinase. Serine peptidase. MEROPS family S16 0.50 H281DRAFT_06022 DNA polymerase I — —
Rhodanobacter denitrificans FW104-10B01 0.66 LRK54_RS16735 endopeptidase La 0.56 LRK54_RS06840 DNA polymerase I low > 59
Rhodanobacter denitrificans MT42 0.66 LRK55_RS16460 endopeptidase La 0.56 LRK55_RS06585 DNA polymerase I low > 63
Burkholderia phytofirmans PsJN 0.66 BPHYT_RS09460 peptidase 0.50 BPHYT_RS33610 DNA polymerase I — —
Dechlorosoma suillum PS 0.66 Dsui_2198 ATP-dependent protease La 0.51 Dsui_0459 DNA polymerase I low > 51
Cupriavidus basilensis FW507-4G11 0.66 RR42_RS09030 DNA-binding protein 0.50 RR42_RS15050 DNA polymerase I — —
Xanthomonas campestris pv. campestris strain 8004 0.66 Xcc-8004.4046.1 ATP-dependent protease La (EC 3.4.21.53) Type I 0.51 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) — —
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS12905 peptidase 0.53 HSERO_RS02260 DNA polymerase I — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.65 GFF4044 ATP-dependent protease La (EC 3.4.21.53) Type I 0.46 GFF5584 DNA polymerase I (EC 2.7.7.7) low > 90
Acidovorax sp. GW101-3H11 0.65 Ac3H11_937 ATP-dependent protease La (EC 3.4.21.53) Type I 0.49 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) — —
Castellaniella sp019104865 MT123 0.65 ABCV34_RS05125 endopeptidase La 0.47 ABCV34_RS02195 DNA polymerase I — —
Paraburkholderia graminis OAS925 0.64 ABIE53_002117 ATP-dependent Lon protease 0.51 ABIE53_004852 DNA polymerase-1 low > 113
Variovorax sp. OAS795 0.64 ABID97_RS17590 endopeptidase La 0.48 ABID97_RS09180 DNA polymerase I 0.67 12
Azospirillum brasilense Sp245 0.63 AZOBR_RS07145 peptidase 0.37 AZOBR_RS30685 DNA polymerase low > 97
Azospirillum sp. SherDot2 0.63 MPMX19_01545 Lon protease 0.36 MPMX19_04869 DNA polymerase I low > 112
Variovorax sp. SCN45 0.63 GFF487 ATP-dependent protease La (EC 3.4.21.53) Type I 0.49 GFF4006 DNA polymerase I (EC 2.7.7.7) 0.89 1
Magnetospirillum magneticum AMB-1 0.63 AMB_RS14035 endopeptidase La 0.39 AMB_RS21305 DNA polymerase I — —
Rhodospirillum rubrum S1H 0.62 Rru_A1552 Peptidase S16, ATP-dependent protease La (NCBI) 0.35 Rru_A3514 DNA polymerase A (NCBI) — —
Caulobacter crescentus NA1000 Δfur 0.61 CCNA_02037 ATP-dependent endopeptidase Lon 0.37 CCNA_03577 DNA polymerase I — —
Caulobacter crescentus NA1000 0.61 CCNA_02037 ATP-dependent endopeptidase Lon 0.37 CCNA_03577 DNA polymerase I low > 66
Rhizobium sp. OAE497 0.61 ABIE40_RS07100 endopeptidase La 0.39 ABIE40_RS00490 DNA polymerase I — —
Brevundimonas sp. GW460-12-10-14-LB2 0.60 A4249_RS06460 endopeptidase La 0.36 A4249_RS13840 DNA polymerase I — —
Phaeobacter inhibens DSM 17395 0.59 PGA1_c20540 ATP-dependent protease La 0.37 PGA1_c31780 DNA polymerase I — —
Bosea sp. OAE506 0.59 ABIE41_RS18050 endopeptidase La 0.36 ABIE41_RS03570 DNA polymerase I — —
Dinoroseobacter shibae DFL-12 0.59 Dshi_1777 ATP-dependent protease La (RefSeq) 0.38 Dshi_2909 DNA polymerase I (RefSeq) low > 64
Sphingomonas koreensis DSMZ 15582 0.58 Ga0059261_0102 endopeptidase La 0.35 Ga0059261_2244 DNA polymerase I (EC 2.7.7.7) low > 68
Acinetobacter radioresistens SK82 0.55 MPMX26_02299 Lon protease 0.48 MPMX26_00574 DNA polymerase I low > 36
Mucilaginibacter yixingensis YX-36 DSM 26809 0.44 ABZR88_RS15670 endopeptidase La 0.36 ABZR88_RS20185 DNA polymerase I low > 71
Fusobacterium nucleatum SB010 0.43 HUW76_01065 endopeptidase La 0.28 HUW76_04385 DNA polymerase I low > 35
Pedobacter sp. GW460-11-11-14-LB5 0.42 CA265_RS14555 endopeptidase La 0.35 CA265_RS19630 DNA polymerase I low > 88
Pontibacter actiniarum KMM 6156, DSM 19842 0.42 CA264_00045 endopeptidase La 0.36 CA264_16535 DNA polymerase I — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.42 Echvi_4670 ATP-dependent protease La 0.35 Echvi_1032 DNA polymerase I low > 79
Bacteroides stercoris CC31F 0.41 HMPREF1181_RS14340 endopeptidase La 0.36 HMPREF1181_RS02070 DNA polymerase I low > 56
Bacteroides ovatus ATCC 8483 0.40 BACOVA_02571 endopeptidase La 0.36 BACOVA_01357 DNA-directed DNA polymerase low > 94
Phocaeicola vulgatus CL09T03C04 0.40 HMPREF1058_RS01210 endopeptidase La 0.33 HMPREF1058_RS11500 DNA polymerase I low > 67
Phocaeicola dorei CL03T12C01 0.40 ABI39_RS16520 endopeptidase La 0.34 ABI39_RS05440 DNA polymerase I — —
Parabacteroides merdae CL09T00C40 0.39 HMPREF1078_RS16185 endopeptidase La 0.36 HMPREF1078_RS06335 DNA polymerase I low > 61

Not shown: 5 genomes with orthologs for Psest_2285 only; 4 genomes with orthologs for Psest_4219 only