Conservation of cofitness between GFF3254 and GFF3382 in Hydrogenophaga sp. GW460-11-11-14-LB1

85 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF3254 Ribonuclease PH (EC 2.7.7.56) 1.0 GFF3382 Aconitate hydratase (EC 4.2.1.3) 0.55 14
Variovorax sp. OAS795 0.82 ABID97_RS23640 ribonuclease PH 0.71 ABID97_RS08550 aconitate hydratase AcnA low > 91
Variovorax sp. SCN45 0.81 GFF2381 Ribonuclease PH (EC 2.7.7.56) 0.72 GFF3909 Aconitate hydratase (EC 4.2.1.3) low > 127
Acidovorax sp. GW101-3H11 0.80 Ac3H11_3670 Ribonuclease PH (EC 2.7.7.56) 0.79 Ac3H11_1140 2-methylisocitrate dehydratase (EC 4.2.1.99) (from data) low > 79
Paraburkholderia sabiae LMG 24235 0.75 QEN71_RS03645 ribonuclease PH 0.66 QEN71_RS17535 aconitate hydratase AcnA low > 153
Burkholderia phytofirmans PsJN 0.74 BPHYT_RS15325 ribonuclease PH 0.67 BPHYT_RS33980 aconitate hydratase low > 109
Ralstonia solanacearum GMI1000 0.74 RS_RS10830 ribonuclease PH 0.69 RS_RS10065 aconitate hydratase AcnA — —
Ralstonia solanacearum PSI07 0.74 RPSI07_RS13840 ribonuclease PH 0.69 RPSI07_RS14625 aconitate hydratase AcnA — —
Paraburkholderia bryophila 376MFSha3.1 0.74 H281DRAFT_04008 RNAse PH 0.67 H281DRAFT_06606 aconitase — —
Paraburkholderia graminis OAS925 0.74 ABIE53_003234 ribonuclease PH 0.58 ABIE53_004758 aconitate hydratase — —
Cupriavidus basilensis FW507-4G11 0.73 RR42_RS04890 ribonuclease PH 0.68 RR42_RS14490 aconitate hydratase 0.26 113
Ralstonia sp. UNC404CL21Col 0.72 ABZR87_RS15255 ribonuclease PH 0.69 ABZR87_RS14605 aconitate hydratase AcnA low > 80
Herbaspirillum seropedicae SmR1 0.72 HSERO_RS10655 ribonuclease PH 0.69 HSERO_RS14940 aconitate hydratase — —
Ralstonia solanacearum IBSBF1503 0.72 RALBFv3_RS03345 ribonuclease PH 0.69 RALBFv3_RS02690 aconitate hydratase AcnA — —
Ralstonia solanacearum UW163 0.72 UW163_RS10375 ribonuclease PH 0.69 UW163_RS11035 aconitate hydratase AcnA — —
Dechlorosoma suillum PS 0.71 Dsui_0494 ribonuclease PH 0.60 Dsui_2347 aconitate hydratase 1 low > 51
Xanthomonas campestris pv. campestris strain 8004 0.68 Xcc-8004.1221.1 Ribonuclease PH (EC 2.7.7.56) 0.48 Xcc-8004.2894.1 Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) low > 74
Dyella japonica UNC79MFTsu3.2 0.68 ABZR86_RS11900 ribonuclease PH 0.46 ABZR86_RS02165 aconitate hydratase AcnA low > 74
Lysobacter sp. OAE881 0.67 ABIE51_RS17285 ribonuclease PH 0.48 ABIE51_RS11535 aconitate hydratase AcnA low > 62
Castellaniella sp019104865 MT123 0.67 ABCV34_RS03515 ribonuclease PH 0.46 ABCV34_RS13800 aconitate hydratase AcnA low > 48
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_01115 ribonuclease PH 0.33 CSW01_06745 Fe/S-dependent 2-methylisocitrate dehydratase AcnD low > 62
Acinetobacter radioresistens SK82 0.65 MPMX26_00040 Ribonuclease PH 0.47 MPMX26_00480 Aconitate hydratase A — —
Dickeya dianthicola ME23 0.65 DZA65_RS00730 ribonuclease PH 0.44 DZA65_RS13065 aconitate hydratase AcnA low > 75
Dickeya dianthicola 67-19 0.65 HGI48_RS00675 ribonuclease PH 0.44 HGI48_RS12610 aconitate hydratase AcnA 0.59 32
Rhodanobacter sp. FW510-T8 0.65 OKGIIK_12150 rph ribonuclease PH 0.46 OKGIIK_06455 acnA aconitate hydratase AcnA — —
Dickeya dadantii 3937 0.64 DDA3937_RS20540 ribonuclease PH 0.45 DDA3937_RS12555 aconitate hydratase AcnA low > 74
Rhodanobacter denitrificans MT42 0.64 LRK55_RS11470 ribonuclease PH 0.44 LRK55_RS00560 aconitate hydratase AcnA — —
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS11745 ribonuclease PH 0.44 LRK54_RS00785 aconitate hydratase AcnA — —
Pseudomonas sp. S08-1 0.64 OH686_13570 ribonuclease PH 0.47 OH686_02100 aconitate hydratase 1 low > 80
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.63 GFF366 Ribonuclease PH (EC 2.7.7.56) 0.46 GFF2709 Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) low > 78
Enterobacter sp. TBS_079 0.63 MPMX20_00092 Ribonuclease PH 0.46 MPMX20_02499 Aconitate hydratase A low > 85
Enterobacter asburiae PDN3 0.63 EX28DRAFT_3893 ribonuclease PH 0.46 EX28DRAFT_0949 aconitate hydratase 1 low > 76
Pseudomonas syringae pv. syringae B728a 0.63 Psyr_0213 RNAse PH 0.46 Psyr_3404 aconitase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.63 Psyr_0213 RNAse PH 0.46 Psyr_3404 aconitase low > 86
Escherichia coli ECOR38 0.63 HEPCGN_14410 rph ribonuclease PH 0.46 HEPCGN_25625 acnA aconitate hydratase AcnA low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.63 OHPLBJKB_00059 Ribonuclease PH 0.46 OHPLBJKB_02406 Aconitate hydratase A low > 73
Escherichia coli ECRC101 0.63 MCAODC_06100 rph ribonuclease PH 0.46 MCAODC_15690 acnA aconitate hydratase AcnA — —
Escherichia coli BL21 0.63 ECD_03500 ribonuclease PH 0.46 ECD_01253 aconitate hydratase 1; aconitase A low > 60
Escherichia coli ECRC62 0.63 BNILDI_04045 rph ribonuclease PH 0.46 BNILDI_18390 acnA aconitate hydratase AcnA — —
Escherichia coli ECRC102 0.63 NIAGMN_13350 rph ribonuclease PH 0.46 NIAGMN_26745 acnA aconitate hydratase AcnA — —
Escherichia fergusonii Becca 0.63 EFB2_00170 Ribonuclease PH 0.46 EFB2_02649 Aconitate hydratase A low > 86
Klebsiella michiganensis M5al 0.63 BWI76_RS27390 ribonuclease PH 0.46 BWI76_RS11940 aconitate hydratase 1 low > 92
Escherichia coli ECOR27 0.63 NOLOHH_07470 rph ribonuclease PH 0.46 NOLOHH_20240 acnA aconitate hydratase AcnA low > 57
Pantoea sp. MT58 0.63 IAI47_00595 ribonuclease PH 0.46 IAI47_09250 aconitate hydratase AcnA low > 76
Escherichia coli Nissle 1917 0.63 ECOLIN_RS20755 ribonuclease PH 0.46 ECOLIN_RS07705 aconitate hydratase AcnA — —
Escherichia coli ECRC99 0.63 KEDOAH_12555 rph ribonuclease PH 0.46 KEDOAH_26190 acnA aconitate hydratase AcnA — —
Escherichia coli ECRC98 0.63 JDDGAC_19215 rph ribonuclease PH 0.46 JDDGAC_05120 acnA aconitate hydratase AcnA — —
Escherichia coli ECRC101 0.63 OKFHMN_15590 rph ribonuclease PH 0.46 OKFHMN_02575 acnA aconitate hydratase AcnA — —
Pseudomonas stutzeri RCH2 0.63 Psest_3813 ribonuclease PH 0.47 Psest_2521 aconitate hydratase 1 low > 67
Alteromonas macleodii MIT1002 0.62 MIT1002_04071 Ribonuclease PH 0.46 MIT1002_00380 Aconitate hydratase 1 low > 70
Pseudomonas simiae WCS417 0.62 PS417_27810 ribonuclease PH 0.47 PS417_07515 aconitate hydratase low > 88
Pseudomonas fluorescens SBW25-INTG 0.62 PFLU_RS29490 ribonuclease PH 0.47 PFLU_RS07595 aconitate hydratase AcnA low > 109
Pseudomonas fluorescens FW300-N1B4 0.62 Pf1N1B4_2117 Ribonuclease PH (EC 2.7.7.56) 0.47 Pf1N1B4_3888 Aconitate hydratase (EC 4.2.1.3) low > 87
Shewanella loihica PV-4 0.62 Shew_3488 ribonuclease PH (RefSeq) 0.33 Shew_1822 aconitate hydratase (RefSeq) low > 60
Pseudomonas fluorescens FW300-N2E2 0.62 Pf6N2E2_4365 Ribonuclease PH (EC 2.7.7.56) 0.48 Pf6N2E2_2301 Aconitate hydratase (EC 4.2.1.3) low > 103
Pseudomonas fluorescens SBW25 0.62 PFLU_RS29490 ribonuclease PH 0.47 PFLU_RS07595 aconitate hydratase AcnA low > 109
Pseudomonas fluorescens GW456-L13 0.62 PfGW456L13_784 Ribonuclease PH (EC 2.7.7.56) 0.47 PfGW456L13_4052 Aconitate hydratase (EC 4.2.1.3) low > 87
Pectobacterium carotovorum WPP14 0.62 HER17_RS20855 ribonuclease PH 0.45 HER17_RS09315 aconitate hydratase AcnA low > 75
Shewanella oneidensis MR-1 0.62 SO4256 rph ribonuclease PH (NCBI ptt file) 0.33 SO0343 acnA aconitate hydratase 1 (NCBI ptt file) low > 76
Pseudomonas fluorescens FW300-N2E3 0.62 AO353_09260 ribonuclease PH 0.47 AO353_00565 aconitate hydratase low > 101
Marinobacter adhaerens HP15 0.62 HP15_300 ribonuclease PH 0.47 HP15_3433 Aconitate hydratase (EC 4.2.1.3) (from data) low > 73
Shewanella sp. ANA-3 0.61 Shewana3_3777 RNAse PH (RefSeq) 0.34 Shewana3_3827 aconitate hydratase (RefSeq) low > 73
Pseudomonas fluorescens FW300-N2C3 0.61 AO356_12500 ribonuclease PH 0.48 AO356_02385 aconitate hydratase low > 104
Kangiella aquimarina DSM 16071 0.61 B158DRAFT_0588 ribonuclease PH 0.47 B158DRAFT_0799 aconitate hydratase 1 low > 40
Rahnella sp. WP5 0.61 EX31_RS14505 ribonuclease PH 0.47 EX31_RS09885 aconitate hydratase AcnA low > 89
Serratia liquefaciens MT49 0.61 IAI46_24850 ribonuclease PH 0.47 IAI46_13950 aconitate hydratase AcnA low > 86
Pseudomonas sp. RS175 0.61 PFR28_04420 Ribonuclease PH 0.48 PFR28_01099 Aconitate hydratase A low > 88
Pseudomonas putida KT2440 0.61 PP_5294 Ribonuclease PH 0.47 PP_2112 aconitate hydratase 1 low > 96
Escherichia coli BW25113 0.61 b3643 rph ribonuclease PH (NCBI) 0.46 b1276 acnA aconitate hydratase (NCBI) low > 76
Dinoroseobacter shibae DFL-12 0.60 Dshi_3463 ribonuclease PH (RefSeq) 0.45 Dshi_1851 aconitate hydratase 1 (RefSeq) low > 64
Sinorhizobium meliloti 1021 0.60 SMc01144 ribonuclease PH 0.46 SMc03846 aconitate hydratase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.60 A4249_RS13125 ribonuclease PH 0.46 A4249_RS12770 aconitate hydratase AcnA — —
Azospirillum sp. SherDot2 0.59 MPMX19_02576 Ribonuclease PH 0.48 MPMX19_02045 Aconitate hydratase A low > 112
Magnetospirillum magneticum AMB-1 0.59 AMB_RS22760 ribonuclease PH 0.59 AMB_RS18485 aconitate hydratase AcnA low > 64
Caulobacter crescentus NA1000 0.59 CCNA_00151 ribonuclease PH 0.47 CCNA_03781 aconitate hydratase — —
Caulobacter crescentus NA1000 Δfur 0.59 CCNA_00151 ribonuclease PH 0.47 CCNA_03781 aconitate hydratase — —
Rhodospirillum rubrum S1H 0.59 Rru_A3641 Ribonuclease PH (NCBI) 0.46 Rru_A3511 Aconitate hydratase 1 (NCBI) — —
Agrobacterium fabrum C58 0.59 Atu0327 ribonuclease PH 0.46 Atu2685 aconitate hydratase — —
Rhizobium sp. OAE497 0.59 ABIE40_RS01640 ribonuclease PH 0.46 ABIE40_RS18275 aconitate hydratase AcnA — —
Bosea sp. OAE506 0.59 ABIE41_RS03295 ribonuclease PH 0.46 ABIE41_RS04965 aconitate hydratase AcnA — —
Azospirillum brasilense Sp245 0.59 AZOBR_RS02205 ribonuclease PH 0.47 AZOBR_RS02985 aconitate hydratase low > 97
Rhodopseudomonas palustris CGA009 0.56 TX73_001710 ribonuclease PH 0.48 TX73_001045 aconitate hydratase AcnA — —
Sphingomonas koreensis DSMZ 15582 0.56 Ga0059261_2741 ribonuclease PH 0.46 Ga0059261_3296 aconitate hydratase 1 — —
Phaeobacter inhibens DSM 17395 0.56 PGA1_c35030 ribonuclease PH 0.44 PGA1_c18830 aconitate hydratase AcnA — —
Mycobacterium tuberculosis H37Rv 0.56 Rv1340 Probable ribonuclease RphA (RNase PH) (tRNA nucleotidyltransferase) 0.46 Rv1475c Probable iron-regulated aconitate hydratase Acn (citrate hydro-lyase) (aconitase) — —
Bifidobacterium breve UCC2003 0.55 BBR_RS12405 ribonuclease PH 0.44 BBR_RS16600 aconitate hydratase AcnA low > 34

Not shown: 3 genomes with orthologs for GFF3254 only; 4 genomes with orthologs for GFF3382 only