| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Marinobacter adhaerens HP15 | 1.0 | HP15_3742 | | Fmu, rRNA SAM-dependent methyltransferase | 1.0 | HP15_2926 | | ribosomal RNA small subunit methyltransferase E | 0.40 | 18 |
| Pseudomonas stutzeri RCH2 | 0.45 | Psest_0021 | | ribosomal RNA small subunit methyltransferase RsmB | 0.43 | Psest_0305 | | RNA methyltransferase, RsmE family | low | > 67 |
| Vibrio cholerae E7946 ATCC 55056 | 0.42 | CSW01_00225 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.46 | CSW01_02495 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 62 |
| Pseudomonas putida KT2440 | 0.42 | PP_0066 | | Ribosomal RNA small subunit methyltransferase B | 0.44 | PP_4985 | | 16S rRNA m3U1498 methyltransferase | low | > 96 |
| Pseudomonas sp. S08-1 | 0.42 | OH686_12525 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase | 0.43 | OH686_10855 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 80 |
| Serratia liquefaciens MT49 | 0.42 | IAI46_23275 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.46 | IAI46_21385 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.42 | GFF2390 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 | 0.46 | GFF3048 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | low | > 78 |
| Escherichia coli ECOR27 | 0.41 | NOLOHH_09320 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.46 | NOLOHH_11150 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 57 |
| Escherichia coli ECRC62 | 0.41 | BNILDI_02200 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.46 | BNILDI_09730 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Escherichia coli BL21 | 0.41 | ECD_03139 | | 16S rRNA m(5)C967 methyltransferase, SAM-dependent | 0.46 | ECD_02776 | | 16S rRNA m(3)U1498 methyltransferase, SAM-dependent | low | > 60 |
| Escherichia coli ECRC98 | 0.41 | JDDGAC_21150 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.46 | JDDGAC_22910 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Escherichia coli ECRC101 | 0.41 | MCAODC_08050 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.46 | MCAODC_09800 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Escherichia coli ECRC101 | 0.41 | OKFHMN_17520 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.46 | OKFHMN_19280 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Escherichia coli ECRC99 | 0.41 | KEDOAH_10620 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.46 | KEDOAH_08860 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Escherichia coli ECRC102 | 0.41 | NIAGMN_15290 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.46 | NIAGMN_17045 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Escherichia coli BW25113 | 0.41 | b3289 | rsmB | 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) | 0.46 | b2946 | yggJ | orf, hypothetical protein (VIMSS) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.41 | OHPLBJKB_00415 | | Ribosomal RNA small subunit methyltransferase B | 0.46 | OHPLBJKB_00772 | | Ribosomal RNA small subunit methyltransferase E | low | > 73 |
| Pseudomonas syringae pv. syringae B728a | 0.41 | Psyr_0017 | | 16S rRNA m(5)C-967 methyltransferase | 0.45 | Psyr_0453 | | 16S rRNA m(3)U-1498 methyltransferase | low | > 86 |
| Escherichia coli ECOR38 | 0.41 | HEPCGN_16350 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.46 | HEPCGN_18585 | | Ribosomal RNA small subunit methyltransferase E | low | > 85 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.41 | Psyr_0017 | | 16S rRNA m(5)C-967 methyltransferase | 0.45 | Psyr_0453 | | 16S rRNA m(3)U-1498 methyltransferase | low | > 86 |
| Klebsiella michiganensis M5al | 0.41 | BWI76_RS25680 | | 16S rRNA m5C967 methyltransferase | 0.45 | BWI76_RS24070 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 92 |
| Escherichia coli Nissle 1917 | 0.41 | ECOLIN_RS18875 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.46 | ECOLIN_RS16390 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 52 |
| Escherichia fergusonii Becca | 0.41 | EFB2_00535 | | Ribosomal RNA small subunit methyltransferase B | 0.46 | EFB2_00956 | | Ribosomal RNA small subunit methyltransferase E | low | > 86 |
| Pseudomonas fluorescens FW300-N2E3 | 0.41 | AO353_10630 | | 16S rRNA methyltransferase | 0.47 | AO353_08050 | | 16S rRNA methyltransferase | low | > 101 |
| Pectobacterium carotovorum WPP14 | 0.40 | HER17_RS02215 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.43 | HER17_RS02640 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 75 |
| Pseudomonas fluorescens FW300-N2C3 | 0.40 | AO356_11275 | | 16S rRNA methyltransferase | 0.46 | AO356_13565 | | 16S rRNA methyltransferase | low | > 104 |
| Pantoea sp. MT58 | 0.40 | IAI47_02280 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.46 | IAI47_03620 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.40 | LU632_RS22480 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.45 | LU632_RS05485 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 74 |
| Pseudomonas fluorescens FW300-N1B4 | 0.40 | Pf1N1B4_1914 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | 0.45 | Pf1N1B4_2376 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | — | — |
| Enterobacter asburiae PDN3 | 0.40 | EX28DRAFT_0039 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase | 0.45 | EX28DRAFT_2984 | | RNA methyltransferase, RsmE family | low | > 76 |
| Pseudomonas fluorescens FW300-N2E2 | 0.40 | Pf6N2E2_4121 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | 0.46 | Pf6N2E2_4630 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | low | > 103 |
| Dickeya dadantii 3937 | 0.40 | DDA3937_RS19135 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.47 | DDA3937_RS18555 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 74 |
| Pseudomonas sp. RS175 | 0.40 | PFR28_04663 | | Ribosomal RNA small subunit methyltransferase B | 0.46 | PFR28_04209 | | Ribosomal RNA small subunit methyltransferase E | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.40 | PfGW456L13_652 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | 0.47 | PfGW456L13_1043 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | low | > 87 |
| Shewanella loihica PV-4 | 0.39 | Shew_3738 | | sun protein (RefSeq) | 0.50 | Shew_3224 | | hypothetical protein (RefSeq) | low | > 60 |
| Rahnella sp. WP5 | 0.39 | EX31_RS15985 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.46 | EX31_RS02660 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 89 |
| Pseudomonas fluorescens SBW25 | 0.39 | PFLU_RS00080 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.44 | PFLU_RS28200 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 109 |
| Enterobacter sp. TBS_079 | 0.39 | MPMX20_04196 | | Ribosomal RNA small subunit methyltransferase B | 0.45 | MPMX20_03804 | | Ribosomal RNA small subunit methyltransferase E | low | > 85 |
| Pseudomonas fluorescens SBW25-INTG | 0.39 | PFLU_RS00080 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.44 | PFLU_RS28200 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 109 |
| Dickeya dianthicola 67-19 | 0.39 | HGI48_RS19225 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.45 | HGI48_RS18490 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 71 |
| Pseudomonas simiae WCS417 | 0.39 | PS417_00085 | | 16S rRNA methyltransferase | 0.44 | PS417_26545 | | 16S rRNA methyltransferase | low | > 88 |
| Dickeya dianthicola ME23 | 0.39 | DZA65_RS20350 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.45 | DZA65_RS19625 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 75 |
| Shewanella sp. ANA-3 | 0.38 | Shewana3_0033 | | sun protein (RefSeq) | 0.48 | Shewana3_3444 | | 16S ribosomal RNA methyltransferase RsmE (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.37 | SO0030 | sun | sun protein (NCBI ptt file) | 0.48 | SO0832 | | conserved hypothetical protein TIGR00046 (NCBI ptt file) | low | > 76 |
| Shewanella amazonensis SB2B | 0.37 | Sama_0041 | | sun protein (RefSeq) | 0.49 | Sama_0575 | | 16S ribosomal RNA methyltransferase RsmE (RefSeq) | low | > 62 |
| Ralstonia sp. UNC404CL21Col | 0.36 | ABZR87_RS04950 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.37 | ABZR87_RS01505 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 80 |
| Kangiella aquimarina DSM 16071 | 0.35 | B158DRAFT_0396 | | ribosomal RNA small subunit methyltransferase RsmB | 0.41 | B158DRAFT_0180 | | RNA methyltransferase, RsmE family | low | > 40 |
| Ralstonia solanacearum PSI07 | 0.35 | RPSI07_RS23575 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.36 | RPSI07_RS11365 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 81 |
| Dechlorosoma suillum PS | 0.34 | Dsui_0812 | | ribosomal RNA small subunit methyltransferase RsmB | 0.40 | Dsui_1568 | | RNA methyltransferase, RsmE family | — | — |
| Alteromonas macleodii MIT1002 | 0.34 | MIT1002_00018 | | Ribosomal RNA small subunit methyltransferase B | 0.39 | MIT1002_03054 | | Ribosomal RNA small subunit methyltransferase E | low | > 70 |
| Lysobacter sp. OAE881 | 0.34 | ABIE51_RS02255 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.35 | ABIE51_RS05260 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 62 |
| Ralstonia solanacearum GMI1000 | 0.33 | RS_RS00375 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.34 | RS_RS13825 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 80 |
| Rhodanobacter sp. FW510-T8 | 0.33 | OKGIIK_13790 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.38 | OKGIIK_11035 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 52 |
| Ralstonia solanacearum IBSBF1503 | 0.33 | RALBFv3_RS09790 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.36 | RALBFv3_RS05880 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.33 | UW163_RS03790 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.36 | UW163_RS07745 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.32 | ABZR86_RS13890 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.39 | ABZR86_RS10230 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 74 |
| Acinetobacter radioresistens SK82 | 0.32 | MPMX26_03021 | | Ribosomal RNA small subunit methyltransferase B | 0.40 | MPMX26_01001 | | Ribosomal RNA small subunit methyltransferase E | low | > 36 |
| Paraburkholderia sabiae LMG 24235 | 0.31 | QEN71_RS00175 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.34 | QEN71_RS27020 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 153 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.31 | GFF1789 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | 0.31 | GFF2462 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | low | > 90 |
| Burkholderia phytofirmans PsJN | 0.31 | BPHYT_RS01475 | | 16S rRNA methyltransferase | 0.35 | BPHYT_RS16855 | | 16S rRNA methyltransferase | low | > 109 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.30 | Xcc-8004.4741.1 | | hypothetical protein | 0.37 | Xcc-8004.1558.1 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | — | — |
| Rhodanobacter denitrificans MT42 | 0.30 | LRK55_RS09765 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.38 | LRK55_RS03930 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 63 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.30 | H281DRAFT_02237 | | 16S rRNA (cytosine967-C5)-methyltransferase | 0.36 | H281DRAFT_06311 | | 16S rRNA (uracil1498-N3)-methyltransferase | low | > 103 |
| Rhodanobacter denitrificans FW104-10B01 | 0.30 | LRK54_RS10125 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.38 | LRK54_RS04160 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 59 |
| Castellaniella sp019104865 MT123 | 0.30 | ABCV34_RS14225 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.28 | ABCV34_RS15445 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.39 | 10 |
| Paraburkholderia graminis OAS925 | 0.29 | ABIE53_000392 | | 16S rRNA (cytosine967-C5)-methyltransferase | 0.35 | ABIE53_003540 | | 16S rRNA (uracil1498-N3)-methyltransferase | low | > 113 |
| Variovorax sp. SCN45 | 0.29 | GFF5878 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) | 0.31 | GFF3255 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) | low | > 127 |
| Herbaspirillum seropedicae SmR1 | 0.29 | HSERO_RS00355 | | methyltransferase | 0.35 | HSERO_RS07110 | | 16S rRNA methyltransferase | low | > 78 |
| Cupriavidus basilensis FW507-4G11 | 0.28 | RR42_RS20450 | | 16S rRNA methyltransferase | 0.34 | RR42_RS17590 | | 16S rRNA methyltransferase | low | > 128 |
| Acidovorax sp. GW101-3H11 | 0.28 | Ac3H11_4461 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | 0.32 | Ac3H11_4323 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | low | > 79 |
| Synechococcus elongatus PCC 7942 | 0.22 | Synpcc7942_0962 | sun | sun protein | 0.18 | Synpcc7942_0806 | | hypothetical protein | low | > 38 |
| Azospirillum sp. SherDot2 | 0.20 | MPMX19_02327 | | Ribosomal RNA small subunit methyltransferase B | 0.23 | MPMX19_00577 | | Ribosomal RNA small subunit methyltransferase E | low | > 112 |
| Azospirillum brasilense Sp245 | 0.20 | AZOBR_RS00235 | | MFS transporter | 0.19 | AZOBR_RS11890 | | 16S rRNA methyltransferase | low | > 97 |
| Caulobacter crescentus NA1000 Δfur | 0.20 | CCNA_00101 | | 16S rRNA m5C methyltransferase RsmB | 0.20 | CCNA_03528 | | RNA methyltransferase | low | > 67 |
| Caulobacter crescentus NA1000 | 0.20 | CCNA_00101 | | 16S rRNA m5C methyltransferase RsmB | 0.20 | CCNA_03528 | | RNA methyltransferase | low | > 66 |
| Phaeobacter inhibens DSM 17395 | 0.19 | PGA1_c32880 | | putative ribosomal RNA small subunit methyltransferase B | 0.22 | PGA1_c02950 | | RNA methyltransferase-like protein | low | > 62 |
| Dinoroseobacter shibae DFL-12 | 0.19 | Dshi_3033 | | Fmu (Sun) domain protein (RefSeq) | 0.20 | Dshi_3099 | | protein of unknown function DUF558 (RefSeq) | low | > 64 |
| Rhodospirillum rubrum S1H | 0.18 | Rru_A0243 | | tRNA/rRNA cytosine-C5-methylase (NCBI) | 0.15 | Rru_A0571 | | hypothetical protein (NCBI) | low | > 58 |
| Agrobacterium fabrum C58 | 0.18 | Atu2825 | | Sun protein | 0.21 | Atu0657 | | hypothetical protein | low | > 89 |
| Fusobacterium nucleatum SB010 | 0.17 | HUW76_07955 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.20 | HUW76_04180 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 35 |
| Rhizobium sp. OAE497 | 0.17 | ABIE40_RS19140 | | RsmB/NOP family class I SAM-dependent RNA methyltransferase | 0.20 | ABIE40_RS03520 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 107 |
| Rhodopseudomonas palustris CGA009 | 0.17 | TX73_000155 | | transcription antitermination factor NusB | 0.22 | TX73_005910 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | low | > 86 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.17 | A4249_RS13165 | | RsmB/NOP family class I SAM-dependent RNA methyltransferase | 0.18 | A4249_RS00350 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.15 | Ga0059261_2239 | | tRNA and rRNA cytosine-C5-methylases | 0.17 | Ga0059261_0807 | | RNA methyltransferase, RsmE family | low | > 68 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.11 | DVU3363 | sun | sun protein (TIGR) | 0.16 | DVU1685 | | conserved hypothetical protein TIGR00046 (TIGR) | low | > 55 |
Not shown: 1 genomes with orthologs for HP15_3742 only; 16 genomes with orthologs for HP15_2926 only