Conservation of cofitness between PGA1_c34110 and PGA1_c29490 in Phaeobacter inhibens DSM 17395

84 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Phaeobacter inhibens DSM 17395 1.0 PGA1_c34110 branched-chain-amino-acid aminotransferase IlvE 1.0 PGA1_c29490 dihydroxy-acid dehydratase LivD 0.79 19
Dinoroseobacter shibae DFL-12 0.82 Dshi_3301 branched-chain amino acid aminotransferase (RefSeq) 0.32 Dshi_0129 dihydroxy-acid dehydratase (RefSeq) — —
Azospirillum brasilense Sp245 0.61 AZOBR_RS16425 branched-chain amino acid aminotransferase 0.73 AZOBR_RS15015 dihydroxy-acid dehydratase low > 97
Magnetospirillum magneticum AMB-1 0.60 AMB_RS02850 branched-chain amino acid aminotransferase 0.74 AMB_RS12770 dihydroxy-acid dehydratase — —
Rhodospirillum rubrum S1H 0.59 Rru_A2223 Branched-chain amino acid aminotransferase I (NCBI) 0.70 Rru_A1786 Dihydroxy-acid dehydratase (NCBI) low > 58
Caulobacter crescentus NA1000 0.58 CCNA_03024 branched-chain amino acid aminotransferase 0.72 CCNA_03139 dihydroxy-acid dehydratase low > 66
Caulobacter crescentus NA1000 Δfur 0.58 CCNA_03024 branched-chain amino acid aminotransferase 0.72 CCNA_03139 dihydroxy-acid dehydratase low > 67
Bosea sp. OAE506 0.56 ABIE41_RS11405 branched-chain amino acid aminotransferase 0.30 ABIE41_RS15690 dihydroxy-acid dehydratase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.51 A4249_RS09820 branched-chain amino acid aminotransferase 0.25 A4249_RS10030 dihydroxy-acid dehydratase — —
Pseudomonas fluorescens GW456-L13 0.51 PfGW456L13_4923 Branched-chain amino acid aminotransferase (EC 2.6.1.42) 0.75 PfGW456L13_973 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 87
Pseudomonas stutzeri RCH2 0.37 Psest_0450 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) 0.74 Psest_0234 dihydroxy-acid dehydratase — —
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS02410 branched-chain amino acid transaminase 0.73 QEN71_RS21095 dihydroxy-acid dehydratase low > 153
Paraburkholderia graminis OAS925 0.37 ABIE53_003432 branched-chain amino acid aminotransferase 0.72 ABIE53_006513 dihydroxy-acid dehydratase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_04193 branched chain amino acid aminotransferase apoenzyme 0.72 H281DRAFT_05312 dihydroxyacid dehydratase low > 103
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS16285 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) 0.70 BPHYT_RS10100 dihydroxy-acid dehydratase low > 109
Ralstonia solanacearum GMI1000 0.36 RS_RS02840 branched-chain amino acid transaminase 0.30 RS_RS12105 dihydroxy-acid dehydratase — —
Ralstonia solanacearum UW163 0.36 UW163_RS01455 branched-chain amino acid transaminase 0.30 UW163_RS09135 dihydroxy-acid dehydratase — —
Ralstonia solanacearum PSI07 0.36 RPSI07_RS21175 branched-chain amino acid transaminase 0.30 RPSI07_RS12840 dihydroxy-acid dehydratase — —
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS12155 branched-chain amino acid transaminase 0.30 RALBFv3_RS04535 dihydroxy-acid dehydratase — —
Pseudomonas sp. S08-1 0.36 OH686_09695 branched-chain amino acid aminotransferase 0.74 OH686_14100 dihydroxy-acid dehydratase low > 80
Herbaspirillum seropedicae SmR1 0.36 HSERO_RS03330 branched-chain amino acid aminotransferase 0.70 HSERO_RS02650 dihydroxy-acid dehydratase low > 78
Hydrogenophaga sp. GW460-11-11-14-LB1 0.35 GFF1835 Branched-chain amino acid aminotransferase (EC 2.6.1.42) 0.61 GFF2073 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 90
Dechlorosoma suillum PS 0.35 Dsui_3339 branched-chain amino acid aminotransferase, group I 0.72 Dsui_1122 dihydroxy-acid dehydratase — —
Variovorax sp. OAS795 0.35 ABID97_RS03790 branched-chain amino acid transaminase 0.31 ABID97_RS17500 dihydroxy-acid dehydratase — —
Acidovorax sp. GW101-3H11 0.35 Ac3H11_3369 Branched-chain amino acid aminotransferase (EC 2.6.1.42) 0.73 Ac3H11_955 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 79
Variovorax sp. SCN45 0.35 GFF5079 Branched-chain amino acid aminotransferase (EC 2.6.1.42) 0.31 GFF471 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Marinobacter adhaerens HP15 0.35 HP15_436 branched-chain-amino-acid aminotransferase 0.68 HP15_595 dihydroxy-acid dehydratase — —
Castellaniella sp019104865 MT123 0.33 ABCV34_RS07930 branched-chain amino acid transaminase 0.69 ABCV34_RS14810 dihydroxy-acid dehydratase 0.68 27
Desulfovibrio vulgaris Hildenborough JW710 0.33 DVU3197 ilvE branched-chain amino acid aminotransferase (TIGR) 0.39 DVU3373 ilvD dihydroxy-acid dehydratase (TIGR) 0.95 4
Pontibacter actiniarum KMM 6156, DSM 19842 0.33 CA264_06940 branched-chain amino acid aminotransferase 0.27 CA264_06935 dihydroxy-acid dehydratase low > 74
Desulfovibrio vulgaris Miyazaki F 0.33 DvMF_2268 branched-chain amino acid aminotransferase (RefSeq) 0.39 DvMF_2034 dihydroxy-acid dehydratase (RefSeq) low > 51
Acinetobacter radioresistens SK82 0.33 MPMX26_00445 Branched-chain-amino-acid aminotransferase 0.30 MPMX26_03019 Dihydroxy-acid dehydratase 0.92 19
Dyella japonica UNC79MFTsu3.2 0.33 ABZR86_RS15965 branched-chain amino acid transaminase 0.27 ABZR86_RS15945 dihydroxy-acid dehydratase 0.95 23
Vibrio cholerae E7946 ATCC 55056 0.32 CSW01_00145 branched-chain-amino-acid transaminase 0.73 CSW01_00140 dihydroxy-acid dehydratase 0.52 3
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS12020 branched-chain amino acid transaminase 0.26 LRK54_RS10320 dihydroxy-acid dehydratase low > 59
Dickeya dadantii 3937 0.32 DDA3937_RS20160 branched-chain-amino-acid transaminase 0.70 DDA3937_RS20155 dihydroxy-acid dehydratase 0.82 3
Rhodanobacter denitrificans MT42 0.32 LRK55_RS09980 branched-chain amino acid transaminase 0.26 LRK55_RS09960 dihydroxy-acid dehydratase low > 63
Dickeya dianthicola ME23 0.32 DZA65_RS21340 branched-chain amino acid transaminase 0.69 DZA65_RS21335 dihydroxy-acid dehydratase 0.86 6
Lysobacter sp. OAE881 0.32 ABIE51_RS16505 branched-chain amino acid transaminase 0.27 ABIE51_RS17540 dihydroxy-acid dehydratase low > 62
Dickeya dianthicola 67-19 0.32 HGI48_RS20300 branched-chain-amino-acid transaminase 0.70 HGI48_RS20295 dihydroxy-acid dehydratase low > 71
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_11840 ilvE branched-chain amino acid transaminase 0.28 OKGIIK_13600 ilvD dihydroxy-acid dehydratase low > 52
Serratia liquefaciens MT49 0.31 IAI46_24350 branched-chain-amino-acid transaminase 0.69 IAI46_24345 dihydroxy-acid dehydratase low > 86
Enterobacter sp. TBS_079 0.31 MPMX20_04500 Branched-chain-amino-acid aminotransferase 0.71 MPMX20_04499 Dihydroxy-acid dehydratase 0.39 31
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.31 GFF2902 Branched-chain amino acid aminotransferase (EC 2.6.1.42) 0.71 GFF2901 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.47 44
Klebsiella michiganensis M5al 0.31 BWI76_RS00970 branched chain amino acid aminotransferase 0.71 BWI76_RS00975 dihydroxy-acid dehydratase 0.60 2
Escherichia fergusonii Becca 0.31 EFB2_04866 Branched-chain-amino-acid aminotransferase 0.71 EFB2_04865 Dihydroxy-acid dehydratase low > 86
Escherichia coli ECRC101 0.31 OKFHMN_14645 ilvE branched-chain-amino-acid transaminase 0.71 OKFHMN_14640 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC102 0.31 NIAGMN_12400 ilvE branched-chain-amino-acid transaminase 0.71 NIAGMN_12395 ilvD dihydroxy-acid dehydratase — —
Escherichia coli BW25113 0.31 b3770 ilvE branched-chain amino acid aminotransferase (NCBI) 0.71 b3771 ilvD dihydroxy-acid dehydratase (NCBI) 0.99 2
Escherichia coli ECRC101 0.31 MCAODC_05150 ilvE branched-chain-amino-acid transaminase 0.71 MCAODC_05145 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC62 0.31 BNILDI_04745 ilvE branched-chain-amino-acid transaminase 0.71 BNILDI_04750 ilvD dihydroxy-acid dehydratase — —
Escherichia coli BL21 0.31 ECD_03648 branched-chain amino acid aminotransferase 0.71 ECD_03649 dihydroxyacid dehydratase 0.77 8
Escherichia coli ECRC98 0.31 JDDGAC_18265 ilvE branched-chain-amino-acid transaminase 0.71 JDDGAC_18260 ilvD dihydroxy-acid dehydratase — —
Pectobacterium carotovorum WPP14 0.31 HER17_RS01070 branched-chain amino acid transaminase 0.71 HER17_RS01075 dihydroxy-acid dehydratase 0.83 45
Escherichia coli ECOR27 0.31 NOLOHH_06780 ilvE branched-chain-amino-acid transaminase 0.71 NOLOHH_06775 ilvD dihydroxy-acid dehydratase low > 57
Escherichia coli Nissle 1917 0.31 ECOLIN_RS21660 branched-chain-amino-acid transaminase 0.71 ECOLIN_RS21665 dihydroxy-acid dehydratase low > 52
Escherichia coli HS(pFamp)R (ATCC 700891) 0.31 OHPLBJKB_04283 Branched-chain-amino-acid aminotransferase 0.71 OHPLBJKB_04282 Dihydroxy-acid dehydratase low > 73
Escherichia coli ECOR38 0.31 HEPCGN_13355 ilvE branched-chain-amino-acid transaminase 0.71 HEPCGN_13350 ilvD dihydroxy-acid dehydratase low > 85
Escherichia coli ECRC99 0.31 KEDOAH_13505 ilvE branched-chain-amino-acid transaminase 0.71 KEDOAH_13510 ilvD dihydroxy-acid dehydratase — —
Enterobacter asburiae PDN3 0.31 EX28DRAFT_4442 branched-chain amino acid aminotransferase, group I 0.71 EX28DRAFT_4443 dihydroxy-acid dehydratase 0.96 1
Erwinia tracheiphila SCR3 0.31 LU632_RS24405 branched-chain amino acid transaminase 0.68 LU632_RS24400 ilvD dihydroxy-acid dehydratase 0.93 4
Rahnella sp. WP5 0.30 EX31_RS15000 branched-chain amino acid transaminase 0.66 EX31_RS15005 dihydroxy-acid dehydratase 0.89 29
Shewanella loihica PV-4 0.30 Shew_0291 branched-chain amino acid aminotransferase (RefSeq) 0.69 Shew_0292 dihydroxy-acid dehydratase (RefSeq) 0.93 13
Pantoea sp. MT58 0.30 IAI47_01030 branched-chain amino acid transaminase 0.71 IAI47_01035 dihydroxy-acid dehydratase 0.99 1
Pedobacter sp. GW460-11-11-14-LB5 0.27 CA265_RS15785 branched-chain-amino-acid transaminase 0.27 CA265_RS15795 dihydroxy-acid dehydratase low > 88
Synechococcus elongatus PCC 7942 0.21 Synpcc7942_1029 ilvE branched-chain amino acid aminotransferase 0.74 Synpcc7942_0626 ilvD dihydroxy-acid dehydratase — —
Bacteroides ovatus ATCC 8483 0.20 BACOVA_03679 branched-chain-amino-acid transaminase 0.59 BACOVA_03302 dihydroxy-acid dehydratase low > 94
Pseudomonas fluorescens SBW25 0.16 PFLU_RS19375 branched-chain amino acid aminotransferase 0.75 PFLU_RS28535 dihydroxy-acid dehydratase low > 109
Pseudomonas fluorescens SBW25-INTG 0.16 PFLU_RS19375 branched-chain amino acid aminotransferase 0.75 PFLU_RS28535 dihydroxy-acid dehydratase low > 109
Pseudomonas syringae pv. syringae B728a 0.16 Psyr_1148 branched chain amino acid aminotransferase apoenzyme 0.74 Psyr_0469 dihydroxyacid dehydratase 0.66 11
Pseudomonas simiae WCS417 0.16 PS417_17565 branched-chain amino acid aminotransferase 0.74 PS417_26890 dihydroxy-acid dehydratase 0.43 16
Pseudomonas syringae pv. syringae B728a ΔmexB 0.16 Psyr_1148 branched chain amino acid aminotransferase apoenzyme 0.74 Psyr_0469 dihydroxyacid dehydratase low > 86
Pseudomonas putida KT2440 0.15 PP_3511 Branched-chain-amino-acid aminotransferase 0.74 PP_5128 Dihydroxy-acid dehydratase 0.93 3
Pseudomonas fluorescens FW300-N2C3 0.15 AO356_22970 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) 0.74 AO356_13250 dihydroxy-acid dehydratase low > 104
Pseudomonas fluorescens FW300-N2E3 0.15 AO353_26655 branched-chain amino acid aminotransferase 0.75 AO353_08345 dihydroxy-acid dehydratase low > 101
Pseudomonas fluorescens FW300-N2E2 0.14 Pf6N2E2_477 Branched-chain amino acid aminotransferase (EC 2.6.1.42) 0.74 Pf6N2E2_4564 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.31 89
Pseudomonas fluorescens FW300-N1B4 0.14 Pf1N1B4_4476 Branched-chain amino acid aminotransferase (EC 2.6.1.42) 0.75 Pf1N1B4_2303 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 87
Pseudomonas sp. RS175 0.14 PFR28_02449 putative branched-chain-amino-acid aminotransferase 0.75 PFR28_04278 Dihydroxy-acid dehydratase low > 88
Ralstonia sp. UNC404CL21Col 0.14 ABZR87_RS18540 branched-chain amino acid aminotransferase 0.73 ABZR87_RS00240 dihydroxy-acid dehydratase low > 80
Alteromonas macleodii MIT1002 0.14 MIT1002_00377 Branched-chain-amino-acid aminotransferase 2 0.71 MIT1002_04041 Dihydroxy-acid dehydratase 0.98 1
Mycobacterium tuberculosis H37Rv 0.13 Rv2210c Branched-chain amino acid transaminase IlvE 0.33 Rv0189c Probable dihydroxy-acid dehydratase IlvD (dad) — —
Bifidobacterium breve UCC2003 0.12 BBR_RS15210 branched-chain amino acid aminotransferase 0.55 BBR_RS17635 dihydroxy-acid dehydratase 0.78 1
Shewanella sp. ANA-3 0.11 Shewana3_3830 branched-chain amino acid aminotransferase (RefSeq) 0.69 Shewana3_0358 dihydroxy-acid dehydratase (RefSeq) 0.83 29
Shewanella oneidensis MR-1 0.11 SO0340 ilvE branched-chain amino acid aminotransferase (NCBI ptt file) 0.68 SO4345 ilvD dihydroxy-acid dehydratase (NCBI ptt file) 0.88 1
Shewanella amazonensis SB2B 0.10 Sama_3299 branched-chain amino acid aminotransferase (RefSeq) 0.69 Sama_3279 dihydroxy-acid dehydratase (RefSeq) 0.85 8

Not shown: 0 genomes with orthologs for PGA1_c34110 only; 17 genomes with orthologs for PGA1_c29490 only