Conservation of cofitness between PGA1_c20570 and PGA1_c26590 in Phaeobacter inhibens DSM 17395

90 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Phaeobacter inhibens DSM 17395 1.0 PGA1_c20570 queuine tRNA-ribosyltransferase Tgt 1.0 PGA1_c26590 peptidyl-dipeptidase Dcp 0.42 2
Dinoroseobacter shibae DFL-12 0.80 Dshi_2346 queuine tRNA-ribosyltransferase (RefSeq) 0.64 Dshi_2973 Peptidyl-dipeptidase Dcp (RefSeq) low > 64
Azospirillum brasilense Sp245 0.65 AZOBR_RS06295 queuine tRNA-ribosyltransferase 0.49 AZOBR_RS23485 peptidase M3 low > 97
Caulobacter crescentus NA1000 0.64 CCNA_01659 queuine tRNA-ribosyltransferase 0.42 CCNA_03816 peptidyl-dipeptidase DCP low > 66
Caulobacter crescentus NA1000 Δfur 0.64 CCNA_01659 queuine tRNA-ribosyltransferase 0.42 CCNA_03816 peptidyl-dipeptidase DCP low > 67
Rhizobium sp. OAE497 0.63 ABIE40_RS09435 tRNA guanosine(34) transglycosylase Tgt 0.51 ABIE40_RS18135 M3 family metallopeptidase low > 107
Sphingomonas koreensis DSMZ 15582 0.63 Ga0059261_1017 tRNA-guanine transglycosylase 0.39 Ga0059261_2479 Zn-dependent oligopeptidases low > 68
Sinorhizobium meliloti 1021 0.62 SMc01206 queuine tRNA-ribosyltransferase 0.53 SMc04403 peptidyl-dipeptidase A protein low > 103
Bosea sp. OAE506 0.62 ABIE41_RS18290 tRNA guanosine(34) transglycosylase Tgt 0.51 ABIE41_RS12985 M3 family metallopeptidase low > 77
Agrobacterium fabrum C58 0.62 Atu1677 queuine tRNA-ribosyltransferase 0.54 Atu2664 peptidyl-dipeptidase low > 89
Brevundimonas sp. GW460-12-10-14-LB2 0.60 A4249_RS02905 tRNA guanosine(34) transglycosylase Tgt 0.35 A4249_RS12525 M3 family metallopeptidase low > 48
Rhodopseudomonas palustris CGA009 0.56 TX73_013485 tRNA guanosine(34) transglycosylase Tgt 0.49 TX73_004495 M3 family metallopeptidase low > 86
Shewanella sp. ANA-3 0.55 Shewana3_1435 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.40 Shewana3_2492 peptidyl-dipeptidase Dcp (RefSeq) low > 73
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_4882 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.25 PfGW456L13_624 Oligopeptidase A (EC 3.4.24.70) low > 87
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_15790 queuine tRNA-ribosyltransferase 0.26 AO353_10775 oligopeptidase A — —
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.26 PFLU_RS00240 oligopeptidase A low > 109
Pseudomonas fluorescens SBW25 0.55 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.26 PFLU_RS00240 oligopeptidase A low > 109
Pseudomonas simiae WCS417 0.55 PS417_23245 queuine tRNA-ribosyltransferase 0.26 PS417_00245 oligopeptidase A — —
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_3006 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.26 Pf1N1B4_1844 Oligopeptidase A (EC 3.4.24.70) low > 87
Shewanella oneidensis MR-1 0.55 SO3113 tgt queuine tRNA-ribosyltransferase (NCBI ptt file) 0.34 SO3142 dcp-1 peptidyl-dipeptidase Dcp (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.55 MIT1002_02813 Queuine tRNA-ribosyltransferase 0.41 MIT1002_00401 Peptidyl-dipeptidase dcp low > 70
Pseudomonas sp. RS175 0.55 PFR28_00277 Queuine tRNA-ribosyltransferase 0.26 PFR28_04699 Oligopeptidase A low > 88
Shewanella amazonensis SB2B 0.54 Sama_2193 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.39 Sama_1564 peptidyl-dipeptidase Dcp (RefSeq) low > 62
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_06690 queuine tRNA-ribosyltransferase 0.26 AO356_11120 oligopeptidase A low > 104
Shewanella loihica PV-4 0.54 Shew_2337 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.41 Shew_2161 peptidyl-dipeptidase Dcp (RefSeq) low > 60
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_3198 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.26 Pf6N2E2_4091 Oligopeptidase A (EC 3.4.24.70) low > 103
Pseudomonas putida KT2440 0.54 PP_0833 queuine tRNA-ribosyltransferase 0.26 PP_0096 oligopeptidase A low > 96
Pseudomonas stutzeri RCH2 0.54 Psest_1242 tRNA-guanine transglycosylase, queuosine-34-forming 0.26 Psest_4320 Zn-dependent oligopeptidases low > 67
Pseudomonas syringae pv. syringae B728a ΔmexB 0.54 Psyr_1228 tRNA-guanine transglycosylase 0.26 Psyr_0045 oligopeptidase A, Metallo peptidase, MEROPS family M03A — —
Pseudomonas syringae pv. syringae B728a 0.54 Psyr_1228 tRNA-guanine transglycosylase 0.26 Psyr_0045 oligopeptidase A, Metallo peptidase, MEROPS family M03A — —
Marinobacter adhaerens HP15 0.54 HP15_1479 queuine tRNA-ribosyltransferase 0.30 HP15_3759 oligopeptidase A-like protein low > 73
Kangiella aquimarina DSM 16071 0.54 B158DRAFT_2516 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.42 B158DRAFT_1374 Zn-dependent oligopeptidases low > 40
Pseudomonas sp. S08-1 0.53 OH686_17430 tRNA-guanine transglycosylase 0.24 OH686_12360 Oligopeptidase A low > 80
Rahnella sp. WP5 0.53 EX31_RS22095 tRNA guanosine(34) transglycosylase Tgt 0.33 EX31_RS05310 peptidyl-dipeptidase Dcp low > 89
Pectobacterium carotovorum WPP14 0.53 HER17_RS15990 tRNA guanosine(34) transglycosylase Tgt 0.25 HER17_RS21300 oligopeptidase A low > 75
Serratia liquefaciens MT49 0.53 IAI46_04840 tRNA guanosine(34) transglycosylase Tgt 0.33 IAI46_11800 peptidyl-dipeptidase Dcp low > 86
Herbaspirillum seropedicae SmR1 0.53 HSERO_RS06175 queuine tRNA-ribosyltransferase 0.25 HSERO_RS07290 oligopeptidase A low > 78
Castellaniella sp019104865 MT123 0.52 ABCV34_RS15365 tRNA guanosine(34) transglycosylase Tgt 0.22 ABCV34_RS04180 M3 family metallopeptidase — —
Enterobacter sp. TBS_079 0.52 MPMX20_00997 Queuine tRNA-ribosyltransferase 0.30 MPMX20_02100 Dipeptidyl carboxypeptidase low > 85
Enterobacter asburiae PDN3 0.52 EX28DRAFT_2565 tRNA-guanine transglycosylase 0.30 EX28DRAFT_1449 Zn-dependent oligopeptidases low > 76
Dechlorosoma suillum PS 0.52 Dsui_3323 tRNA-guanine transglycosylase, queuosine-34-forming 0.25 Dsui_0046 Zn-dependent oligopeptidase low > 51
Dickeya dadantii 3937 0.52 DDA3937_RS05470 tRNA guanosine(34) transglycosylase Tgt 0.25 DDA3937_RS21265 oligopeptidase A low > 74
Dickeya dianthicola ME23 0.52 DZA65_RS05855 tRNA guanosine(34) transglycosylase Tgt 0.26 DZA65_RS00035 oligopeptidase A low > 75
Dickeya dianthicola 67-19 0.52 HGI48_RS05530 tRNA guanosine(34) transglycosylase Tgt 0.26 HGI48_RS00045 oligopeptidase A low > 71
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS03130 tRNA guanosine(34) transglycosylase Tgt 0.35 LRK54_RS06270 M3 family metallopeptidase low > 59
Rhodanobacter denitrificans MT42 0.52 LRK55_RS02880 tRNA guanosine(34) transglycosylase Tgt 0.35 LRK55_RS06015 M3 family metallopeptidase low > 63
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS09540 tRNA guanosine(34) transglycosylase Tgt 0.32 ABZR86_RS12690 peptidyl-dipeptidase Dcp low > 74
Klebsiella michiganensis M5al 0.52 BWI76_RS06300 tRNA guanosine(34) transglycosylase Tgt 0.30 BWI76_RS15470 dipeptidyl carboxypeptidase II — —
Vibrio cholerae E7946 ATCC 55056 0.52 CSW01_03850 tRNA guanosine(34) transglycosylase Tgt 0.26 CSW01_01010 oligopeptidase A low > 62
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_10000 tgt tRNA guanosine(34) transglycosylase Tgt 0.36 OKGIIK_00370 M3 family peptidase low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF4305 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.30 GFF2498 Dipeptidyl carboxypeptidase Dcp (EC 3.4.15.5) low > 78
Pantoea sp. MT58 0.51 IAI47_14805 tRNA guanosine(34) transglycosylase Tgt 0.28 IAI47_09830 peptidyl-dipeptidase Dcp low > 76
Lysobacter sp. OAE881 0.51 ABIE51_RS15020 tRNA guanosine(34) transglycosylase Tgt 0.35 ABIE51_RS09155 M3 family metallopeptidase 0.42 43
Escherichia coli ECOR27 0.51 NOLOHH_01440 tgt tRNA guanosine(34) transglycosylase Tgt 0.30 NOLOHH_18645 dcp peptidyl-dipeptidase Dcp — —
Escherichia coli BL21 0.51 ECD_00354 tRNA-guanine transglycosylase 0.30 ECD_01497 dipeptidyl carboxypeptidase II — —
Escherichia coli ECRC101 0.51 OKFHMN_08505 tgt tRNA guanosine(34) transglycosylase Tgt 0.30 OKFHMN_01020 dcp peptidyl-dipeptidase Dcp — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.51 OHPLBJKB_03270 Queuine tRNA-ribosyltransferase 0.30 OHPLBJKB_02174 Dipeptidyl carboxypeptidase low > 73
Escherichia coli ECRC98 0.51 JDDGAC_12160 tgt tRNA guanosine(34) transglycosylase Tgt 0.30 JDDGAC_03530 dcp peptidyl-dipeptidase Dcp — —
Escherichia coli Nissle 1917 0.51 ECOLIN_RS02445 tRNA guanosine(34) transglycosylase Tgt 0.30 ECOLIN_RS08805 peptidyl-dipeptidase Dcp — —
Escherichia coli ECRC99 0.51 KEDOAH_19460 tgt tRNA guanosine(34) transglycosylase Tgt 0.30 KEDOAH_27410 dcp peptidyl-dipeptidase Dcp — —
Escherichia fergusonii Becca 0.51 EFB2_03651 Queuine tRNA-ribosyltransferase 0.30 EFB2_02418 Dipeptidyl carboxypeptidase low > 86
Escherichia coli BW25113 0.51 b0406 tgt queuine tRNA-ribosyltransferase (NCBI) 0.30 b1538 dcp dipeptidyl carboxypeptidase II (NCBI) low > 76
Escherichia coli ECRC102 0.51 NIAGMN_06560 tgt tRNA guanosine(34) transglycosylase Tgt 0.30 NIAGMN_25165 dcp peptidyl-dipeptidase Dcp — —
Escherichia coli ECOR38 0.51 HEPCGN_07145 tgt tRNA guanosine(34) transglycosylase Tgt 0.30 HEPCGN_26925 dcp peptidyl-dipeptidase Dcp low > 85
Escherichia coli ECRC101 0.51 MCAODC_27730 tgt tRNA guanosine(34) transglycosylase Tgt 0.30 MCAODC_16905 dcp peptidyl-dipeptidase Dcp — —
Escherichia coli ECRC62 0.51 BNILDI_22855 tgt tRNA guanosine(34) transglycosylase Tgt 0.30 BNILDI_17135 dcp peptidyl-dipeptidase Dcp — —
Acinetobacter radioresistens SK82 0.51 MPMX26_00438 Queuine tRNA-ribosyltransferase 0.27 MPMX26_02685 Oligopeptidase A low > 36
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS26640 tRNA guanosine(34) transglycosylase Tgt 0.25 QEN71_RS05695 M3 family metallopeptidase 0.75 121
Erwinia tracheiphila SCR3 0.51 LU632_RS18500 tgt tRNA guanosine(34) transglycosylase Tgt 0.25 LU632_RS19470 prlC oligopeptidase A low > 74
Paraburkholderia bryophila 376MFSha3.1 0.51 H281DRAFT_04670 tRNA-guanine transglycosylase 0.22 H281DRAFT_00461 oligopeptidase A Metallo peptidase. MEROPS family M03A low > 103
Cupriavidus basilensis FW507-4G11 0.51 RR42_RS17400 queuine tRNA-ribosyltransferase 0.24 RR42_RS07340 oligopeptidase A low > 128
Burkholderia phytofirmans PsJN 0.51 BPHYT_RS03410 queuine tRNA-ribosyltransferase 0.24 BPHYT_RS12875 oligopeptidase A low > 109
Xanthomonas campestris pv. campestris strain 8004 0.50 Xcc-8004.2168.1 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.35 Xcc-8004.301.1 Dipeptidyl carboxypeptidase Dcp (EC 3.4.15.5) low > 74
Ralstonia sp. UNC404CL21Col 0.49 ABZR87_RS01280 tRNA guanosine(34) transglycosylase Tgt 0.23 ABZR87_RS13490 M3 family metallopeptidase low > 80
Ralstonia solanacearum GMI1000 0.49 RS_RS13575 tRNA guanosine(34) transglycosylase Tgt 0.23 RS_RS08035 oligopeptidase A low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.49 GFF2798 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.26 GFF4214 Oligopeptidase A (EC 3.4.24.70) low > 90
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS05685 tRNA guanosine(34) transglycosylase Tgt 0.23 RALBFv3_RS01690 oligopeptidase A low > 76
Ralstonia solanacearum UW163 0.48 UW163_RS07940 tRNA guanosine(34) transglycosylase Tgt 0.23 UW163_RS15000 oligopeptidase A — —
Acidovorax sp. GW101-3H11 0.47 Ac3H11_861 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.25 Ac3H11_4097 Oligopeptidase A (EC 3.4.24.70) low > 79
Variovorax sp. SCN45 0.47 GFF5534 Queuine tRNA-ribosyltransferase (EC 2.4.2.29) 0.26 GFF963 Oligopeptidase A (EC 3.4.24.70) low > 127
Variovorax sp. OAS795 0.47 ABID97_RS01595 tRNA guanosine(34) transglycosylase Tgt 0.27 ABID97_RS14080 M3 family metallopeptidase low > 91
Ralstonia solanacearum PSI07 0.46 RPSI07_RS11615 tRNA guanosine(34) transglycosylase Tgt 0.23 RPSI07_RS15795 oligopeptidase A low > 81
Echinicola vietnamensis KMM 6221, DSM 17526 0.45 Echvi_2049 tRNA-guanine transglycosylase, queuosine-34-forming 0.37 Echvi_2572 Zn-dependent oligopeptidases low > 79
Pontibacter actiniarum KMM 6156, DSM 19842 0.44 CA264_00655 tRNA-guanine(34) transglycosylase 0.38 CA264_01885 peptidase M3 low > 74
Phocaeicola vulgatus CL09T03C04 0.44 HMPREF1058_RS01215 tRNA guanosine(34) transglycosylase Tgt 0.40 HMPREF1058_RS03645 M3 family metallopeptidase low > 67
Phocaeicola dorei CL03T12C01 0.44 ABI39_RS16515 tRNA guanosine(34) transglycosylase Tgt 0.40 ABI39_RS17525 M3 family metallopeptidase low > 72
Parabacteroides merdae CL09T00C40 0.44 HMPREF1078_RS01080 tRNA guanosine(34) transglycosylase Tgt 0.37 HMPREF1078_RS08580 M3 family metallopeptidase low > 61
Bacteroides thetaiotaomicron VPI-5482 0.43 BT0835 tRNA-guanine transglycosylase (NCBI ptt file) 0.36 BT2834 peptidyl-dipeptidase (NCBI ptt file) — —
Bacteroides stercoris CC31F 0.43 HMPREF1181_RS14345 tRNA guanosine(34) transglycosylase Tgt 0.36 HMPREF1181_RS01125 M3 family metallopeptidase low > 56
Bacteroides ovatus ATCC 8483 0.43 BACOVA_02570 tRNA-guanine transglycosylase 0.35 BACOVA_02082 peptidase family M3 low > 94
Mucilaginibacter yixingensis YX-36 DSM 26809 0.43 ABZR88_RS13980 tRNA guanosine(34) transglycosylase Tgt 0.34 ABZR88_RS16390 peptidyl-dipeptidase Dcp low > 71

Not shown: 9 genomes with orthologs for PGA1_c20570 only; 1 genomes with orthologs for PGA1_c26590 only