| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Marinobacter adhaerens HP15 | 1.0 | HP15_541 | | peptide chain release factor 3 | 1.0 | HP15_2504 | | carbohydrate kinase, YjeF related protein | 0.40 | 15 |
| Shewanella sp. ANA-3 | 0.81 | Shewana3_1037 | prfC | peptide chain release factor 3 (RefSeq) | 0.27 | Shewana3_0592 | | carbohydrate kinase, YjeF related protein (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.81 | Shew_2820 | prfC | peptide chain release factor 3 (RefSeq) | 0.27 | Shew_0561 | | carbohydrate kinase, YjeF-related protein (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.79 | Sama_0968 | prfC | peptide chain release factor 3 (RefSeq) | 0.25 | Sama_3030 | | YjeF protein (RefSeq) | low | > 62 |
| Vibrio cholerae E7946 ATCC 55056 | 0.79 | CSW01_03470 | | peptide chain release factor 3 | 0.29 | CSW01_14940 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 62 |
| Klebsiella michiganensis M5al | 0.79 | BWI76_RS04100 | | peptide chain release factor 3 | 0.34 | BWI76_RS02510 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 92 |
| Enterobacter asburiae PDN3 | 0.79 | EX28DRAFT_3583 | | peptide chain release factor 3 | 0.34 | EX28DRAFT_3364 | | yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region | low | > 76 |
| Enterobacter sp. TBS_079 | 0.79 | MPMX20_00673 | | Peptide chain release factor RF3 | 0.35 | MPMX20_00448 | | Bifunctional NAD(P)H-hydrate repair enzyme Nnr | low | > 85 |
| Dickeya dadantii 3937 | 0.79 | DDA3937_RS02445 | | peptide chain release factor 3 | 0.32 | DDA3937_RS18635 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 74 |
| Dickeya dianthicola ME23 | 0.79 | DZA65_RS02505 | | peptide chain release factor 3 | 0.33 | DZA65_RS19705 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 75 |
| Pantoea sp. MT58 | 0.79 | IAI47_03375 | | peptide chain release factor 3 | 0.32 | IAI47_02565 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.79 | OHPLBJKB_03687 | | Peptide chain release factor RF3 | 0.35 | OHPLBJKB_03875 | | Bifunctional NAD(P)H-hydrate repair enzyme Nnr | low | > 73 |
| Escherichia coli Nissle 1917 | 0.79 | ECOLIN_RS25110 | | peptide chain release factor 3 | 0.35 | ECOLIN_RS24205 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 52 |
| Escherichia coli ECOR27 | 0.79 | NOLOHH_03600 | prfC | peptide chain release factor 3 | 0.35 | NOLOHH_04545 | nnr | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 57 |
| Escherichia fergusonii Becca | 0.79 | EFB2_04072 | | Peptide chain release factor RF3 | 0.35 | EFB2_04368 | | Bifunctional NAD(P)H-hydrate repair enzyme Nnr | low | > 86 |
| Escherichia coli ECRC101 | 0.79 | OKFHMN_11280 | prfC | peptide chain release factor 3 | 0.35 | OKFHMN_12280 | nnr | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | — | — |
| Escherichia coli ECRC62 | 0.79 | BNILDI_08000 | prfC | peptide chain release factor 3 | 0.35 | BNILDI_06945 | nnr | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | — | — |
| Escherichia coli ECRC101 | 0.79 | MCAODC_01795 | prfC | peptide chain release factor 3 | 0.35 | MCAODC_02795 | nnr | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | — | — |
| Escherichia coli ECRC99 | 0.79 | KEDOAH_16865 | prfC | peptide chain release factor 3 | 0.35 | KEDOAH_15875 | nnr | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | — | — |
| Escherichia coli ECOR38 | 0.79 | HEPCGN_09285 | prfC | peptide chain release factor 3 | 0.34 | HEPCGN_10510 | nnr | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 85 |
| Escherichia coli BW25113 | 0.79 | b4375 | prfC | peptide chain release factor 3 (NCBI) | 0.35 | b4167 | yjeF | predicted carbohydrate kinase (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.79 | ECD_04250 | | peptide chain release factor RF-3 | 0.35 | ECD_04034 | | bifunctional NAD(P)H-hydrate repair enzyme; C-terminal domain ADP-dependent (S)-NAD(P)H-hydrate dehydratase and N-terminal domain NAD(P)H-hydrate epimerase | low | > 60 |
| Escherichia coli ECRC98 | 0.79 | JDDGAC_14875 | prfC | peptide chain release factor 3 | 0.35 | JDDGAC_15920 | nnr | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | — | — |
| Erwinia tracheiphila SCR3 | 0.79 | LU632_RS02475 | prfC | peptide chain release factor 3 | 0.33 | LU632_RS02030 | nnr | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 74 |
| Escherichia coli ECRC102 | 0.79 | NIAGMN_09130 | prfC | peptide chain release factor 3 | 0.35 | NIAGMN_10130 | nnr | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | — | — |
| Dickeya dianthicola 67-19 | 0.78 | HGI48_RS02400 | | peptide chain release factor 3 | 0.34 | HGI48_RS18570 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | — | — |
| Rahnella sp. WP5 | 0.78 | EX31_RS04095 | | peptide chain release factor 3 | 0.36 | EX31_RS08845 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | — | — |
| Serratia liquefaciens MT49 | 0.78 | IAI46_02875 | | peptide chain release factor 3 | 0.34 | IAI46_01600 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.78 | HER17_RS19065 | | peptide chain release factor 3 | 0.35 | HER17_RS02560 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.78 | GFF1035 | | Peptide chain release factor 3 | 0.35 | GFF820 | | NAD(P)HX epimerase / NAD(P)HX dehydratase | low | > 78 |
| Alteromonas macleodii MIT1002 | 0.78 | MIT1002_01192 | | Peptide chain release factor 3 | 0.31 | MIT1002_03793 | | Nicotinamide nucleotide repair protein | low | > 70 |
| Kangiella aquimarina DSM 16071 | 0.75 | B158DRAFT_2239 | | peptide chain release factor 3 | 0.31 | B158DRAFT_1947 | | yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region | low | > 40 |
| Pseudomonas sp. S08-1 | 0.68 | OH686_08765 | | peptide chain release factor 3 | 0.37 | OH686_09495 | | NAD(P)H-hydrate epimerase / ADP-dependent (S)-NAD(P)H-hydrate dehydratase | — | — |
| Pseudomonas sp. RS175 | 0.68 | PFR28_00118 | | Peptide chain release factor RF3 | 0.38 | PFR28_05116 | | Bifunctional NAD(P)H-hydrate repair enzyme Nnr | — | — |
| Pseudomonas stutzeri RCH2 | 0.68 | Psest_3351 | | peptide chain release factor 3 | 0.38 | Psest_0678 | | yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region | low | > 67 |
| Pseudomonas fluorescens FW300-N2C3 | 0.68 | AO356_07285 | | peptide chain release factor 3 | 0.38 | AO356_08680 | | carbohydrate kinase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.68 | AO353_05420 | | peptide chain release factor 3 | 0.37 | AO353_13120 | | carbohydrate kinase | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.67 | PfGW456L13_5060 | | Peptide chain release factor 3 | 0.35 | PfGW456L13_159 | | NAD(P)HX epimerase / NAD(P)HX dehydratase | low | > 87 |
| Pseudomonas syringae pv. syringae B728a | 0.67 | Psyr_4253 | | bacterial peptide chain release factor 3 (bRF-3) | 0.34 | Psyr_0567 | | Protein of unknown function UPF0031:YjeF-related protein, N-terminal | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.67 | Psyr_4253 | | bacterial peptide chain release factor 3 (bRF-3) | 0.34 | Psyr_0567 | | Protein of unknown function UPF0031:YjeF-related protein, N-terminal | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.67 | Pf6N2E2_3327 | | Peptide chain release factor 3 | 0.38 | Pf6N2E2_3619 | | NAD(P)HX epimerase / NAD(P)HX dehydratase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.67 | ABZR86_RS19000 | | peptide chain release factor 3 | 0.31 | ABZR86_RS00840 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | — | — |
| Lysobacter sp. OAE881 | 0.67 | ABIE51_RS16210 | | peptide chain release factor 3 | 0.32 | ABIE51_RS08050 | | NAD(P)H-hydrate dehydratase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.66 | LRK54_RS05380 | | peptide chain release factor 3 | 0.32 | LRK54_RS15135 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | — | — |
| Rhodanobacter denitrificans MT42 | 0.66 | LRK55_RS05155 | | peptide chain release factor 3 | 0.32 | LRK55_RS14850 | | NAD(P)H-hydrate dehydratase | — | — |
| Acinetobacter radioresistens SK82 | 0.66 | MPMX26_00476 | | Peptide chain release factor RF3 | 0.23 | MPMX26_01782 | | Bifunctional NAD(P)H-hydrate repair enzyme Nnr | — | — |
| Rhodanobacter sp. FW510-T8 | 0.65 | OKGIIK_01430 | prfC | peptide chain release factor 3 | 0.28 | OKGIIK_03905 | | Bifunctional NAD(P)H-hydrate repair enzyme | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.64 | Xcc-8004.1590.1 | | Peptide chain release factor 3 | 0.30 | Xcc-8004.2253.1 | | NAD(P)HX epimerase / NAD(P)HX dehydratase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.62 | RR42_RS37475 | | peptide chain release factor 3 | 0.16 | RR42_RS09070 | | carbohydrate kinase | low | > 128 |
| Herbaspirillum seropedicae SmR1 | 0.62 | HSERO_RS14640 | | peptide chain release factor 3 | 0.21 | HSERO_RS11180 | | sugar kinase | low | > 78 |
| Ralstonia sp. UNC404CL21Col | 0.61 | ABZR87_RS23485 | | peptide chain release factor 3 | 0.20 | ABZR87_RS12740 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 80 |
| Ralstonia solanacearum UW163 | 0.61 | UW163_RS16595 | | peptide chain release factor 3 | 0.19 | UW163_RS14605 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.61 | RALBFv3_RS23345 | | peptide chain release factor 3 | 0.19 | RALBFv3_RS01295 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 76 |
| Ralstonia solanacearum PSI07 | 0.61 | RPSI07_RS07810 | | peptide chain release factor 3 | 0.18 | RPSI07_RS16180 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.61 | RS_RS25080 | | peptide chain release factor 3 | 0.18 | RS_RS08700 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 80 |
| Dechlorosoma suillum PS | 0.59 | Dsui_2418 | | peptide chain release factor 3 | 0.16 | Dsui_2898 | | yjeF-like protein, hydroxyethylthiazole kinase-related protein | — | — |
| Magnetospirillum magneticum AMB-1 | 0.53 | AMB_RS01375 | | peptide chain release factor 3 | 0.08 | AMB_RS14075 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | — | — |
| Azospirillum brasilense Sp245 | 0.53 | AZOBR_RS14730 | | peptide chain release factor 3 | 0.16 | AZOBR_RS07115 | | hypothetical protein | — | — |
| Castellaniella sp019104865 MT123 | 0.52 | ABCV34_RS12505 | | peptide chain release factor 3 | 0.19 | ABCV34_RS02980 | | NAD(P)H-hydrate dehydratase | low | > 48 |
| Rhodospirillum rubrum S1H | 0.52 | Rru_A2497 | | Peptide chain release factor 3 (NCBI) | 0.12 | Rru_A1547 | | hypothetical protein (NCBI) | low | > 58 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.51 | H281DRAFT_03538 | | bacterial peptide chain release factor 3 (bRF-3) | 0.18 | H281DRAFT_00907 | | yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region | low | > 103 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.51 | Echvi_0584 | | peptide chain release factor 3 | 0.17 | Echvi_0073 | | yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region | low | > 79 |
| Burkholderia phytofirmans PsJN | 0.51 | BPHYT_RS34275 | | peptide chain release factor 3 | 0.20 | BPHYT_RS09505 | | carbohydrate kinase | low | > 109 |
| Azospirillum sp. SherDot2 | 0.51 | MPMX19_01192 | | Peptide chain release factor 3 | 0.17 | MPMX19_01552 | | Bifunctional NAD(P)H-hydrate repair enzyme Nnr | — | — |
| Acidovorax sp. GW101-3H11 | 0.51 | Ac3H11_3041 | | Peptide chain release factor 3 | 0.17 | Ac3H11_415 | | NAD(P)HX epimerase / NAD(P)HX dehydratase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.51 | GFF768 | | Peptide chain release factor 3 | 0.15 | GFF4918 | | NAD(P)HX epimerase / NAD(P)HX dehydratase | low | > 90 |
| Paraburkholderia sabiae LMG 24235 | 0.50 | QEN71_RS17200 | | peptide chain release factor 3 | 0.19 | QEN71_RS21930 | | NAD(P)H-hydrate dehydratase | low | > 153 |
| Variovorax sp. SCN45 | 0.50 | GFF2045 | | Peptide chain release factor 3 | 0.17 | GFF397 | | NAD(P)H-hydrate epimerase (EC 5.1.99.6) / ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136) | low | > 127 |
| Parabacteroides merdae CL09T00C40 | 0.50 | HMPREF1078_RS04145 | | peptide chain release factor 3 | 0.20 | HMPREF1078_RS15325 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 61 |
| Sinorhizobium meliloti 1021 | 0.47 | SMc00427 | | peptide chain release factor RF-3 protein | 0.15 | SMc00946 | | hypothetical protein | low | > 103 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.47 | CA265_RS18435 | | peptide chain release factor 3 | 0.17 | CA265_RS24885 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 88 |
| Rhodopseudomonas palustris CGA009 | 0.47 | TX73_011820 | | peptide chain release factor 3 | 0.15 | TX73_015380 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | 0.39 | 79 |
| Bosea sp. OAE506 | 0.46 | ABIE41_RS06180 | | peptide chain release factor 3 | 0.21 | ABIE41_RS16885 | | NAD(P)H-hydrate dehydratase | low | > 77 |
| Rhizobium sp. OAE497 | 0.46 | ABIE40_RS01450 | | peptide chain release factor 3 | 0.17 | ABIE40_RS09345 | | NAD(P)H-hydrate dehydratase | low | > 107 |
| Agrobacterium fabrum C58 | 0.46 | Atu0315 | | peptide chain release factor 3 | 0.16 | Atu1768 | | hypothetical protein | — | — |
| Phaeobacter inhibens DSM 17395 | 0.46 | PGA1_c10620 | | peptide chain release factor 3 | 0.17 | PGA1_c18700 | | yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.46 | Ga0059261_2044 | | peptide chain release factor 3 | 0.11 | Ga0059261_0649 | | yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region | low | > 68 |
| Phocaeicola vulgatus CL09T03C04 | 0.45 | HMPREF1058_RS07935 | | peptide chain release factor 3 | 0.22 | HMPREF1058_RS00705 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | — | — |
| Phocaeicola dorei CL03T12C01 | 0.45 | ABI39_RS00385 | | peptide chain release factor 3 | 0.22 | ABI39_RS08310 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | — | — |
| Dinoroseobacter shibae DFL-12 | 0.45 | Dshi_1336 | | peptide chain release factor 3 (RefSeq) | 0.16 | Dshi_1837 | | carbohydrate kinase, YjeF related protein (RefSeq) | low | > 64 |
| Bacteroides ovatus ATCC 8483 | 0.45 | BACOVA_04458 | | peptide chain release factor 3 | 0.22 | BACOVA_05215 | | YjeF domain protein | low | > 94 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.44 | BT1729 | | peptide chain release factor 3 (RF-3) (NCBI ptt file) | 0.22 | BT4383 | | putative sugar kinase (NCBI ptt file) | low | > 81 |
| Bacteroides stercoris CC31F | 0.44 | HMPREF1181_RS05585 | | peptide chain release factor 3 | 0.21 | HMPREF1181_RS06260 | | bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase | low | > 56 |
| Caulobacter crescentus NA1000 | 0.42 | CCNA_01123 | | peptide chain release factor RF-3 | 0.14 | CCNA_02043 | | sugar kinase | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.42 | CCNA_01123 | | peptide chain release factor RF-3 | 0.14 | CCNA_02043 | | sugar kinase | low | > 67 |
| Synechococcus elongatus PCC 7942 | 0.40 | Synpcc7942_2365 | prfC | peptide chain release factor 3 | 0.11 | Synpcc7942_1273 | | hypothetical protein | low | > 38 |
Not shown: 8 genomes with orthologs for HP15_541 only; 9 genomes with orthologs for HP15_2504 only