Conservation of cofitness between GFF1934 and GFF2397 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

90 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) 1.0 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.82 12
Escherichia coli BW25113 0.97 b2318 truA tRNA pseudouridine synthase A (NCBI) 0.87 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.34 59
Escherichia coli BL21 0.97 ECD_02243 tRNA pseudouridine(38-40) synthase 0.87 ECD_03132 dehydroshikimate reductase, NAD(P)-binding — —
Escherichia coli ECOR27 0.97 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA 0.87 NOLOHH_09355 aroE shikimate dehydrogenase low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.97 OHPLBJKB_01387 tRNA pseudouridine synthase A 0.87 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) low > 73
Escherichia coli ECRC98 0.96 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase 0.87 JDDGAC_21185 aroE shikimate dehydrogenase — —
Escherichia coli ECOR38 0.96 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase 0.87 HEPCGN_16385 aroE shikimate dehydrogenase low > 85
Escherichia coli Nissle 1917 0.96 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA 0.87 ECOLIN_RS18840 shikimate dehydrogenase low > 52
Escherichia coli ECRC102 0.96 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase 0.87 NIAGMN_15325 aroE shikimate dehydrogenase — —
Escherichia coli ECRC99 0.96 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase 0.87 KEDOAH_10585 aroE shikimate dehydrogenase — —
Escherichia coli ECRC101 0.96 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase 0.87 MCAODC_08085 aroE shikimate dehydrogenase — —
Escherichia coli ECRC101 0.96 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase 0.87 OKFHMN_17565 aroE shikimate dehydrogenase — —
Escherichia coli ECRC62 0.96 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA 0.87 BNILDI_02165 aroE shikimate dehydrogenase — —
Escherichia fergusonii Becca 0.96 EFB2_01540 tRNA pseudouridine synthase A 0.86 EFB2_00542 Shikimate dehydrogenase (NADP(+)) low > 86
Enterobacter sp. TBS_079 0.92 MPMX20_03253 tRNA pseudouridine synthase A 0.80 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) low > 85
Enterobacter asburiae PDN3 0.92 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase 0.81 EX28DRAFT_0046 shikimate dehydrogenase low > 76
Klebsiella michiganensis M5al 0.90 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA 0.79 BWI76_RS25645 shikimate dehydrogenase low > 92
Pectobacterium carotovorum WPP14 0.81 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA 0.61 HER17_RS02250 shikimate dehydrogenase low > 75
Pantoea sp. MT58 0.80 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA 0.62 IAI47_02315 shikimate dehydrogenase — —
Erwinia tracheiphila SCR3 0.80 LU632_RS07825 truA tRNA pseudouridine(38-40) synthase TruA 0.62 LU632_RS22445 aroE shikimate dehydrogenase — —
Serratia liquefaciens MT49 0.80 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA 0.66 IAI46_23240 shikimate dehydrogenase low > 86
Dickeya dianthicola ME23 0.79 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA 0.61 DZA65_RS20315 shikimate dehydrogenase — —
Dickeya dianthicola 67-19 0.79 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA 0.60 HGI48_RS19190 shikimate dehydrogenase — —
Dickeya dadantii 3937 0.79 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA 0.61 DDA3937_RS19100 shikimate dehydrogenase — —
Rahnella sp. WP5 0.73 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA 0.62 EX31_RS15950 shikimate dehydrogenase — —
Vibrio cholerae E7946 ATCC 55056 0.73 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA 0.48 CSW01_00280 shikimate dehydrogenase low > 62
Shewanella sp. ANA-3 0.70 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) 0.48 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) low > 73
Shewanella amazonensis SB2B 0.69 Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) 0.42 Sama_0052 shikimate dehydrogenase (RefSeq) 0.44 22
Shewanella loihica PV-4 0.69 Shew_2306 tRNA pseudouridine synthase A (RefSeq) 0.46 Shew_3727 shikimate 5-dehydrogenase (RefSeq) — —
Alteromonas macleodii MIT1002 0.65 MIT1002_02529 tRNA pseudouridine synthase A 0.28 MIT1002_00029 Shikimate dehydrogenase — —
Kangiella aquimarina DSM 16071 0.58 B158DRAFT_1483 pseudouridylate synthase I 0.28 B158DRAFT_0259 shikimate 5-dehydrogenase low > 40
Pseudomonas sp. S08-1 0.56 OH686_04450 tRNA pseudouridine(38-40) synthase 0.46 OH686_12485 Shikimate 5-dehydrogenase I alpha low > 80
Pseudomonas putida KT2440 0.56 PP_1994 tRNA pseudouridine (38-40)synthase 0.42 PP_0074 shikimate 5-dehydrogenase — —
Pseudomonas fluorescens SBW25 0.55 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA 0.45 PFLU_RS00120 shikimate dehydrogenase — —
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA 0.45 PFLU_RS00120 shikimate dehydrogenase — —
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.45 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.54 23
Pseudomonas simiae WCS417 0.54 PS417_18565 pseudouridine synthase 0.44 PS417_00125 shikimate dehydrogenase — —
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.46 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 87
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_21435 pseudouridine synthase 0.46 AO356_11315 shikimate dehydrogenase low > 104
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.46 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Pseudomonas sp. RS175 0.53 PFR28_02817 tRNA pseudouridine synthase A 0.46 PFR28_04655 Shikimate dehydrogenase (NADP(+)) — —
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_1662 tRNA pseudouridine synthase 0.46 Psyr_0025 shikimate dehydrogenase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_1662 tRNA pseudouridine synthase 0.46 Psyr_0025 shikimate dehydrogenase low > 86
Pseudomonas fluorescens FW300-N2E3 0.53 AO353_20660 pseudouridine synthase 0.45 AO353_10670 shikimate dehydrogenase low > 101
Marinobacter adhaerens HP15 0.52 HP15_1829 tRNA pseudouridine synthase A 0.39 HP15_3750 shikimate dehydrogenase — —
Pseudomonas stutzeri RCH2 0.52 Psest_2585 pseudouridylate synthase I 0.45 Psest_0029 shikimate 5-dehydrogenase — —
Dechlorosoma suillum PS 0.49 Dsui_3194 pseudouridylate synthase I 0.45 Dsui_0443 shikimate 5-dehydrogenase — —
Acinetobacter radioresistens SK82 0.49 MPMX26_00352 tRNA pseudouridine synthase A 0.38 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) low > 36
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS16485 tRNA pseudouridine synthase A 0.43 HSERO_RS01990 shikimate 5-dehydrogenase low > 78
Burkholderia phytofirmans PsJN 0.47 BPHYT_RS33885 tRNA pseudouridine synthase A 0.38 BPHYT_RS16975 shikimate 5-dehydrogenase low > 109
Lysobacter sp. OAE881 0.46 ABIE51_RS08245 tRNA pseudouridine(38-40) synthase TruA 0.30 ABIE51_RS01815 shikimate dehydrogenase low > 62
Paraburkholderia graminis OAS925 0.46 ABIE53_004807 tRNA pseudouridine38-40 synthase 0.38 ABIE53_003560 shikimate dehydrogenase — —
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_06069 tRNA pseudouridine38-40 synthase 0.39 H281DRAFT_01679 shikimate dehydrogenase (EC 1.1.1.25) low > 103
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA 0.40 QEN71_RS27130 shikimate dehydrogenase low > 153
Xanthomonas campestris pv. campestris strain 8004 0.45 Xcc-8004.1961.1 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.32 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 74
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS01700 tRNA pseudouridine(38-40) synthase TruA 0.34 LRK54_RS08595 shikimate dehydrogenase low > 59
Rhodanobacter denitrificans MT42 0.44 LRK55_RS01480 tRNA pseudouridine(38-40) synthase TruA 0.34 LRK55_RS08360 shikimate dehydrogenase low > 63
Acidovorax sp. GW101-3H11 0.44 Ac3H11_1532 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.31 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 79
Ralstonia solanacearum IBSBF1503 0.43 RALBFv3_RS02595 tRNA pseudouridine(38-40) synthase TruA 0.37 RALBFv3_RS05945 shikimate dehydrogenase — —
Ralstonia solanacearum UW163 0.43 UW163_RS11130 tRNA pseudouridine(38-40) synthase TruA 0.37 UW163_RS07680 shikimate dehydrogenase — —
Dyella japonica UNC79MFTsu3.2 0.43 ABZR86_RS08015 tRNA pseudouridine(38-40) synthase TruA 0.33 ABZR86_RS14985 shikimate dehydrogenase low > 74
Ralstonia solanacearum GMI1000 0.42 RS_RS09975 tRNA pseudouridine(38-40) synthase TruA 0.37 RS_RS13890 shikimate dehydrogenase low > 80
Ralstonia solanacearum PSI07 0.42 RPSI07_RS14720 tRNA pseudouridine(38-40) synthase TruA 0.38 RPSI07_RS11300 shikimate dehydrogenase low > 81
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF3357 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.38 GFF5226 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 90
Castellaniella sp019104865 MT123 0.42 ABCV34_RS04265 tRNA pseudouridine(38-40) synthase TruA 0.38 ABCV34_RS11620 shikimate dehydrogenase low > 48
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_04830 truA tRNA pseudouridine(38-40) synthase TruA 0.31 OKGIIK_15365 aroE shikimate dehydrogenase — —
Variovorax sp. SCN45 0.41 GFF3885 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) 0.29 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 127
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS14510 tRNA pseudouridine(38-40) synthase TruA 0.38 ABZR87_RS01605 shikimate dehydrogenase low > 80
Variovorax sp. OAS795 0.40 ABID97_RS08440 tRNA pseudouridine(38-40) synthase TruA 0.26 ABID97_RS06300 shikimate dehydrogenase — —
Cupriavidus basilensis FW507-4G11 0.40 RR42_RS14370 tRNA pseudouridine synthase A 0.36 RR42_RS17645 shikimate dehydrogenase — —
Bosea sp. OAE506 0.34 ABIE41_RS00165 tRNA pseudouridine(38-40) synthase TruA 0.17 ABIE41_RS04650 shikimate dehydrogenase — —
Azospirillum sp. SherDot2 0.32 MPMX19_02005 tRNA pseudouridine synthase A 0.20 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) — —
Rhodospirillum rubrum S1H 0.30 Rru_A3352 Pseudouridylate synthase (NCBI) 0.20 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) — —
Sinorhizobium meliloti 1021 0.30 SMc01099 tRNA pseudouridine synthase A 0.21 SMc02791 shikimate 5-dehydrogenase — —
Caulobacter crescentus NA1000 0.29 CCNA_00280 tRNA pseudouridine synthase A 0.18 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) low > 66
Agrobacterium fabrum C58 0.29 Atu0368 tRNA pseudouridine synthase I 0.22 Atu0003 shikimate 5-dehydrogenase — —
Caulobacter crescentus NA1000 Δfur 0.29 CCNA_00280 tRNA pseudouridine synthase A 0.18 CCNA_00003 shikimate 5-dehydrogenase low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.29 A4249_RS12340 tRNA pseudouridine(38-40) synthase TruA 0.17 A4249_RS13660 shikimate dehydrogenase — —
Rhodopseudomonas palustris CGA009 0.29 TX73_003225 tRNA pseudouridine(38-40) synthase TruA 0.20 TX73_022410 shikimate dehydrogenase — —
Rhizobium sp. OAE497 0.29 ABIE40_RS01915 tRNA pseudouridine(38-40) synthase TruA 0.19 ABIE40_RS19250 shikimate dehydrogenase — —
Sphingomonas koreensis DSMZ 15582 0.28 Ga0059261_0647 tRNA pseudouridine(38-40) synthase 0.16 Ga0059261_2194 shikimate dehydrogenase (EC 1.1.1.25) (from data) low > 68
Phaeobacter inhibens DSM 17395 0.27 PGA1_c05650 tRNA pseudouridine synthase A 0.21 PGA1_c35150 shikimate dehydrogenase AroE — —
Bacteroides ovatus ATCC 8483 0.26 BACOVA_05075 tRNA pseudouridine synthase A 0.16 BACOVA_05065 putative shikimate dehydrogenase — —
Phocaeicola dorei CL03T12C01 0.26 ABI39_RS12690 tRNA pseudouridine(38-40) synthase TruA 0.15 ABI39_RS12665 shikimate dehydrogenase low > 72
Phocaeicola vulgatus CL09T03C04 0.26 HMPREF1058_RS16775 tRNA pseudouridine(38-40) synthase TruA 0.15 HMPREF1058_RS16750 shikimate dehydrogenase low > 67
Dinoroseobacter shibae DFL-12 0.26 Dshi_1938 tRNA pseudouridine synthase A (RefSeq) 0.24 Dshi_3450 shikimate 5-dehydrogenase (RefSeq) — —
Bacteroides thetaiotaomicron VPI-5482 0.26 BT4237 tRNA pseudouridine synthase A (NCBI ptt file) 0.15 BT4215 shikimate dehydrogenase (EC 1.1.1.25) (from data) — —
Pedobacter sp. GW460-11-11-14-LB5 0.25 CA265_RS15580 tRNA pseudouridine(38-40) synthase TruA 0.14 CA265_RS19745 shikimate dehydrogenase (EC 1.1.1.25) (from data) — —
Bacteroides stercoris CC31F 0.25 HMPREF1181_RS06250 tRNA pseudouridine(38-40) synthase TruA 0.15 HMPREF1181_RS06320 shikimate dehydrogenase low > 56
Echinicola vietnamensis KMM 6221, DSM 17526 0.24 Echvi_1728 pseudouridylate synthase I 0.15 Echvi_1145 Shikimate 5-dehydrogenase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.20 ABZR88_RS21140 tRNA pseudouridine(38-40) synthase TruA 0.13 ABZR88_RS20055 shikimate dehydrogenase — —

Not shown: 12 genomes with orthologs for GFF1934 only; 1 genomes with orthologs for GFF2397 only