| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas stutzeri RCH2 | 1.0 | Psest_2285 | | ATP-dependent protease La | 1.0 | Psest_2259 | | excinuclease ABC, C subunit | 0.27 | 14 |
| Pseudomonas fluorescens GW456-L13 | 0.91 | PfGW456L13_2554 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.87 | PfGW456L13_2886 | | Excinuclease ABC subunit C | 0.29 | 22 |
| Pseudomonas sp. RS175 | 0.91 | PFR28_01230 | | Lon protease | 0.83 | PFR28_01411 | | UvrABC system protein C | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.91 | AO356_01740 | | DNA-binding protein | 0.86 | AO356_00350 | | excinuclease ABC subunit C | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.91 | Pf6N2E2_2216 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.83 | Pf6N2E2_2021 | | Excinuclease ABC subunit C | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.91 | AO353_20185 | | DNA-binding protein | 0.86 | AO353_21835 | | excinuclease ABC subunit C | 0.27 | 81 |
| Pseudomonas fluorescens FW300-N1B4 | 0.91 | Pf1N1B4_3947 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.86 | Pf1N1B4_5618 | | Excinuclease ABC subunit C | — | — |
| Pseudomonas simiae WCS417 | 0.90 | PS417_17225 | | DNA-binding protein | 0.87 | PS417_10725 | | excinuclease ABC subunit C | — | — |
| Pseudomonas sp. S08-1 | 0.90 | OH686_03635 | | endopeptidase La | 0.83 | OH686_00340 | | excinuclease ABC subunit C | low | > 80 |
| Pseudomonas fluorescens SBW25 | 0.90 | PFLU_RS19160 | | endopeptidase La | 0.87 | PFLU_RS10770 | | excinuclease ABC subunit UvrC | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.90 | PFLU_RS19160 | | endopeptidase La | 0.87 | PFLU_RS10770 | | excinuclease ABC subunit UvrC | low | > 109 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.89 | Psyr_1749 | | ATP-dependent proteinase, Serine peptidase, MEROPS family S16 | 0.85 | Psyr_2896 | | Excinuclease ABC subunit C | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.89 | Psyr_1749 | | ATP-dependent proteinase, Serine peptidase, MEROPS family S16 | 0.85 | Psyr_2896 | | Excinuclease ABC subunit C | low | > 86 |
| Pseudomonas putida KT2440 | 0.88 | PP_2302 | | DNA-binding, ATP-dependent protease | 0.84 | PP_4098 | | UvrABC system protein C | low | > 96 |
| Marinobacter adhaerens HP15 | 0.71 | HP15_2183 | | DNA-binding ATP-dependent protease La | 0.57 | HP15_1568 | | excinuclease ABC subunit C | low | > 73 |
| Shewanella loihica PV-4 | 0.70 | Shew_2506 | | ATP-dependent protease La (RefSeq) | 0.53 | Shew_1825 | uvrC | excinuclease ABC subunit C (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.70 | SO1796 | lon | ATP-dependent protease La (NCBI ptt file) | 0.54 | SO1861 | uvrC | excinuclease ABC, C subunit (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.70 | Shewana3_2659 | | Lon-A peptidase (RefSeq) | 0.54 | Shewana3_1609 | uvrC | excinuclease ABC subunit C (RefSeq) | — | — |
| Dickeya dadantii 3937 | 0.69 | DDA3937_RS05650 | | endopeptidase La | 0.51 | DDA3937_RS13700 | | excinuclease ABC subunit UvrC | low | > 74 |
| Klebsiella michiganensis M5al | 0.69 | BWI76_RS06535 | | endopeptidase La | 0.52 | BWI76_RS18330 | | excinuclease ABC subunit C | low | > 92 |
| Dickeya dianthicola 67-19 | 0.69 | HGI48_RS05695 | | endopeptidase La | 0.51 | HGI48_RS13795 | | excinuclease ABC subunit UvrC | low | > 71 |
| Dickeya dianthicola ME23 | 0.69 | DZA65_RS06020 | | endopeptidase La | 0.51 | DZA65_RS14285 | | excinuclease ABC subunit UvrC | low | > 75 |
| Serratia liquefaciens MT49 | 0.69 | IAI46_05020 | | endopeptidase La | 0.52 | IAI46_09210 | | excinuclease ABC subunit UvrC | 0.66 | 7 |
| Pectobacterium carotovorum WPP14 | 0.69 | HER17_RS15840 | | endopeptidase La | 0.50 | HER17_RS07715 | | excinuclease ABC subunit UvrC | — | — |
| Rahnella sp. WP5 | 0.69 | EX31_RS22255 | | endopeptidase La | 0.50 | EX31_RS24150 | | excinuclease ABC subunit UvrC | low | > 89 |
| Shewanella amazonensis SB2B | 0.69 | Sama_1226 | | endopeptidase La (RefSeq) | 0.53 | Sama_1608 | uvrC | excinuclease ABC subunit C (RefSeq) | low | > 62 |
| Enterobacter sp. TBS_079 | 0.68 | MPMX20_01030 | | Lon protease | 0.51 | MPMX20_02838 | | UvrABC system protein C | low | > 85 |
| Erwinia tracheiphila SCR3 | 0.68 | LU632_RS18335 | lon | endopeptidase La | 0.51 | LU632_RS10195 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Enterobacter asburiae PDN3 | 0.68 | EX28DRAFT_2531 | | endopeptidase La | 0.51 | EX28DRAFT_0634 | | Excinuclease ABC subunit C | low | > 76 |
| Escherichia coli BW25113 | 0.68 | b0439 | lon | DNA-binding ATP-dependent protease La (NCBI) | 0.52 | b1913 | uvrC | excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.68 | GFF4355 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.51 | GFF1700 | | Excinuclease ABC subunit C | low | > 78 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.68 | OHPLBJKB_03234 | | Lon protease | 0.52 | OHPLBJKB_01816 | | UvrABC system protein C | low | > 73 |
| Escherichia coli BL21 | 0.68 | ECD_00391 | | DNA-binding ATP-dependent protease La | 0.52 | ECD_01878 | | excinuclease UvrABC, endonuclease subunit | low | > 60 |
| Escherichia coli ECOR27 | 0.68 | NOLOHH_01255 | lon_P403L | Lon protease | 0.51 | NOLOHH_16445 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Alteromonas macleodii MIT1002 | 0.68 | MIT1002_02757 | | Lon protease | 0.50 | MIT1002_02153 | | Excinuclease ABC subunit C | low | > 70 |
| Escherichia coli ECRC62 | 0.68 | BNILDI_22670 | lon_P403L | Lon protease | 0.51 | BNILDI_15235 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Escherichia coli Nissle 1917 | 0.68 | ECOLIN_RS02635 | | endopeptidase La | 0.52 | ECOLIN_RS10895 | | excinuclease ABC subunit UvrC | low | > 52 |
| Vibrio cholerae E7946 ATCC 55056 | 0.68 | CSW01_09605 | | endopeptidase La | 0.53 | CSW01_06140 | | excinuclease ABC subunit C | low | > 62 |
| Escherichia coli ECOR38 | 0.68 | HEPCGN_06935 | lon_P403L | Lon protease | 0.51 | HEPCGN_04180 | uvrC | excinuclease ABC subunit UvrC | low | > 85 |
| Pantoea sp. MT58 | 0.68 | IAI47_14645 | | endopeptidase La | 0.52 | IAI47_12465 | | excinuclease ABC subunit UvrC | — | — |
| Escherichia coli ECRC98 | 0.68 | JDDGAC_11975 | | Lon protease | 0.51 | JDDGAC_00415 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Ralstonia sp. UNC404CL21Col | 0.68 | ABZR87_RS12785 | | endopeptidase La | 0.46 | ABZR87_RS10245 | | excinuclease ABC subunit UvrC | low | > 80 |
| Escherichia coli ECRC99 | 0.68 | KEDOAH_19645 | | Lon protease | 0.51 | KEDOAH_02265 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Escherichia coli ECRC101 | 0.68 | OKFHMN_08320 | | Lon protease | 0.51 | OKFHMN_25825 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Escherichia fergusonii Becca | 0.68 | EFB2_03618 | | Lon protease | 0.52 | EFB2_02033 | | UvrABC system protein C | low | > 86 |
| Escherichia coli ECRC102 | 0.68 | NIAGMN_06375 | | Lon protease | 0.51 | NIAGMN_02225 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Escherichia coli ECRC101 | 0.68 | MCAODC_27545 | | Lon protease | 0.51 | MCAODC_19565 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Ralstonia solanacearum UW163 | 0.67 | UW163_RS14650 | | endopeptidase La | 0.45 | UW163_RS11990 | | excinuclease ABC subunit UvrC | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.67 | RALBFv3_RS01340 | | endopeptidase La | 0.45 | RALBFv3_RS14525 | | excinuclease ABC subunit UvrC | — | — |
| Ralstonia solanacearum GMI1000 | 0.67 | RS_RS08655 | | endopeptidase La | 0.44 | RS_RS05305 | | excinuclease ABC subunit UvrC | — | — |
| Ralstonia solanacearum PSI07 | 0.67 | RPSI07_RS16135 | | endopeptidase La | 0.45 | RPSI07_RS18935 | | excinuclease ABC subunit UvrC | — | — |
| Kangiella aquimarina DSM 16071 | 0.66 | B158DRAFT_1038 | | ATP-dependent protease La | 0.50 | B158DRAFT_1273 | | Excinuclease ABC subunit C | low | > 40 |
| Lysobacter sp. OAE881 | 0.66 | ABIE51_RS14145 | | endopeptidase La | 0.48 | ABIE51_RS12455 | | excinuclease ABC subunit UvrC | low | > 62 |
| Dyella japonica UNC79MFTsu3.2 | 0.66 | ABZR86_RS07320 | | endopeptidase La | 0.54 | ABZR86_RS02245 | | excinuclease ABC subunit UvrC | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.66 | OKGIIK_08030 | lon | endopeptidase La | 0.54 | OKGIIK_06930 | uvrC | excinuclease ABC subunit UvrC | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.66 | LRK55_RS16460 | | endopeptidase La | 0.56 | LRK55_RS00120 | | excinuclease ABC subunit UvrC | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.66 | LRK54_RS16735 | | endopeptidase La | 0.56 | LRK54_RS00380 | | excinuclease ABC subunit UvrC | low | > 59 |
| Dechlorosoma suillum PS | 0.66 | Dsui_2198 | | ATP-dependent protease La | 0.50 | Dsui_2470 | | excinuclease ABC, C subunit | low | > 51 |
| Cupriavidus basilensis FW507-4G11 | 0.66 | RR42_RS09030 | | DNA-binding protein | 0.45 | RR42_RS14000 | | excinuclease ABC subunit C | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.66 | Xcc-8004.4046.1 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.47 | Xcc-8004.2477.1 | | Excinuclease ABC subunit C | low | > 74 |
| Herbaspirillum seropedicae SmR1 | 0.65 | HSERO_RS12905 | | peptidase | 0.47 | HSERO_RS09690 | | excinuclease ABC subunit C | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.65 | GFF4044 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.42 | GFF3847 | | Excinuclease ABC subunit C | — | — |
| Castellaniella sp019104865 MT123 | 0.65 | ABCV34_RS05125 | | endopeptidase La | 0.44 | ABCV34_RS06980 | | excinuclease ABC subunit UvrC | — | — |
| Acidovorax sp. GW101-3H11 | 0.65 | Ac3H11_937 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.42 | Ac3H11_373 | | Excinuclease ABC subunit C | 0.49 | 57 |
| Variovorax sp. OAS795 | 0.64 | ABID97_RS17590 | | endopeptidase La | 0.44 | ABID97_RS10635 | | excinuclease ABC subunit UvrC | low | > 91 |
| Azospirillum brasilense Sp245 | 0.63 | AZOBR_RS07145 | | peptidase | 0.38 | AZOBR_RS08965 | | excinuclease ABC subunit C | low | > 97 |
| Azospirillum sp. SherDot2 | 0.63 | MPMX19_01545 | | Lon protease | 0.36 | MPMX19_01070 | | UvrABC system protein C | low | > 112 |
| Variovorax sp. SCN45 | 0.63 | GFF487 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.44 | GFF2859 | | Excinuclease ABC subunit C | low | > 127 |
| Magnetospirillum magneticum AMB-1 | 0.63 | AMB_RS14035 | | endopeptidase La | 0.35 | AMB_RS19240 | | UvrABC system protein C | low | > 64 |
| Rhodospirillum rubrum S1H | 0.62 | Rru_A1552 | | Peptidase S16, ATP-dependent protease La (NCBI) | 0.37 | Rru_A2220 | | Excinuclease ABC, C subunit (NCBI) | low | > 58 |
| Caulobacter crescentus NA1000 | 0.61 | CCNA_02037 | | ATP-dependent endopeptidase Lon | 0.33 | CCNA_02975 | | excinuclease ABC subunit C | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.61 | CCNA_02037 | | ATP-dependent endopeptidase Lon | 0.33 | CCNA_02975 | | excinuclease ABC subunit C | — | — |
| Rhodopseudomonas palustris CGA009 | 0.61 | TX73_015345 | | endopeptidase La | 0.39 | TX73_006010 | | excinuclease ABC subunit UvrC | — | — |
| Rhizobium sp. OAE497 | 0.61 | ABIE40_RS07100 | | endopeptidase La | 0.35 | ABIE40_RS06500 | | excinuclease ABC subunit UvrC | — | — |
| Sinorhizobium meliloti 1021 | 0.61 | SMc01905 | | ATP-dependent protease LA protein | 0.37 | SMc00602 | | excinuclease ABC subunit C | — | — |
| Agrobacterium fabrum C58 | 0.60 | Atu1261 | | ATP-dependent protease LA | 0.36 | Atu1129 | | excinuclease ABC chain C | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.60 | A4249_RS06460 | | endopeptidase La | 0.34 | A4249_RS01670 | | excinuclease ABC subunit UvrC | — | — |
| Phaeobacter inhibens DSM 17395 | 0.59 | PGA1_c20540 | | ATP-dependent protease La | 0.38 | PGA1_c02880 | | uvrABC system protein C | — | — |
| Dinoroseobacter shibae DFL-12 | 0.59 | Dshi_1777 | | ATP-dependent protease La (RefSeq) | 0.39 | Dshi_0644 | | excinuclease ABC, C subunit (RefSeq) | low | > 64 |
| Sphingomonas koreensis DSMZ 15582 | 0.58 | Ga0059261_0102 | | endopeptidase La | 0.38 | Ga0059261_3186 | | Excinuclease ABC subunit C | low | > 68 |
| Acinetobacter radioresistens SK82 | 0.55 | MPMX26_02299 | | Lon protease | 0.49 | MPMX26_00228 | | UvrABC system protein C | low | > 36 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.52 | DVU1337 | lon | ATP-dependent protease La (TIGR) | 0.25 | DVU0801 | uvrC | excinuclease ABC, C subunit (TIGR) | low | > 55 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.44 | ABZR88_RS15670 | | endopeptidase La | 0.25 | ABZR88_RS04150 | | excinuclease ABC subunit UvrC | low | > 71 |
| Fusobacterium nucleatum SB010 | 0.43 | HUW76_01065 | | endopeptidase La | 0.27 | HUW76_06695 | | excinuclease ABC subunit UvrC | low | > 35 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.42 | CA264_00045 | | endopeptidase La | 0.25 | CA264_16350 | | excinuclease ABC subunit C | low | > 74 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.42 | CA265_RS14555 | | endopeptidase La | 0.24 | CA265_RS18110 | | excinuclease ABC subunit C | low | > 88 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.42 | Echvi_4670 | | ATP-dependent protease La | 0.25 | Echvi_0619 | | excinuclease ABC, C subunit | low | > 79 |
| Bacteroides stercoris CC31F | 0.41 | HMPREF1181_RS14340 | | endopeptidase La | 0.26 | HMPREF1181_RS02095 | | excinuclease ABC subunit UvrC | low | > 56 |
| Bacteroides ovatus ATCC 8483 | 0.40 | BACOVA_02571 | | endopeptidase La | 0.25 | BACOVA_01365 | | excinuclease ABC, C subunit | low | > 94 |
| Phocaeicola vulgatus CL09T03C04 | 0.40 | HMPREF1058_RS01210 | | endopeptidase La | 0.26 | HMPREF1058_RS11525 | | excinuclease ABC subunit UvrC | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.40 | ABI39_RS16520 | | endopeptidase La | 0.26 | ABI39_RS05415 | | excinuclease ABC subunit UvrC | low | > 72 |
| Parabacteroides merdae CL09T00C40 | 0.39 | HMPREF1078_RS16185 | | endopeptidase La | 0.26 | HMPREF1078_RS06310 | | excinuclease ABC subunit UvrC | low | > 61 |
Not shown: 6 genomes with orthologs for Psest_2285 only; 5 genomes with orthologs for Psest_2259 only