Conservation of cofitness between Psest_3270 and Psest_0021 in Pseudomonas stutzeri RCH2

84 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_3270 probable S-adenosylmethionine-dependent methyltransferase, YraL family 1.0 Psest_0021 ribosomal RNA small subunit methyltransferase RsmB 0.23 14
Pseudomonas simiae WCS417 0.83 PS417_04590 methyltransferase 0.75 PS417_00085 16S rRNA methyltransferase low > 88
Pseudomonas fluorescens FW300-N2E2 0.82 Pf6N2E2_5346 rRNA small subunit methyltransferase I 0.75 Pf6N2E2_4121 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 103
Pseudomonas fluorescens SBW25 0.81 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.75 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 109
Pseudomonas fluorescens FW300-N2C3 0.81 AO356_17110 methyltransferase 0.75 AO356_11275 16S rRNA methyltransferase 0.63 1
Pseudomonas fluorescens SBW25-INTG 0.81 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.75 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 109
Pseudomonas sp. RS175 0.81 PFR28_03597 Ribosomal RNA small subunit methyltransferase I 0.76 PFR28_04663 Ribosomal RNA small subunit methyltransferase B low > 88
Pseudomonas fluorescens FW300-N2E3 0.81 AO353_15290 methyltransferase 0.76 AO353_10630 16S rRNA methyltransferase low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.81 Psyr_4112 Protein of unknown function UPF0011 0.77 Psyr_0017 16S rRNA m(5)C-967 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.81 Psyr_4112 Protein of unknown function UPF0011 0.77 Psyr_0017 16S rRNA m(5)C-967 methyltransferase low > 86
Pseudomonas fluorescens FW300-N1B4 0.80 Pf1N1B4_953 rRNA small subunit methyltransferase I 0.75 Pf1N1B4_1914 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) — —
Pseudomonas fluorescens GW456-L13 0.79 PfGW456L13_1643 rRNA small subunit methyltransferase I 0.74 PfGW456L13_652 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 87
Pseudomonas putida KT2440 0.78 PP_1326 16S rRNA 2'-O-ribose C1402 methyltransferase 0.76 PP_0066 Ribosomal RNA small subunit methyltransferase B 0.66 2
Pseudomonas sp. S08-1 0.77 OH686_08340 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.75 OH686_12525 16S rRNA (cytosine(967)-C(5))-methyltransferase low > 80
Dickeya dadantii 3937 0.57 DDA3937_RS01715 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.43 DDA3937_RS19135 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 74
Escherichia coli ECOR27 0.57 NOLOHH_10035 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.43 NOLOHH_09320 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 57
Escherichia coli ECRC99 0.57 KEDOAH_09915 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.42 KEDOAH_10620 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli ECRC101 0.57 MCAODC_08755 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.42 MCAODC_08050 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli BW25113 0.57 b3146 yraL predicted methyltransferase (NCBI) 0.43 b3289 rsmB 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) low > 76
Escherichia coli ECRC62 0.57 BNILDI_01495 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.43 BNILDI_02200 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli ECRC101 0.57 OKFHMN_18235 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.42 OKFHMN_17520 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli BL21 0.57 ECD_03013 16S rRNA C1402 2'-O-ribose methyltransferase, SAM-dependent 0.43 ECD_03139 16S rRNA m(5)C967 methyltransferase, SAM-dependent low > 60
Escherichia coli ECRC102 0.57 NIAGMN_15995 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.42 NIAGMN_15290 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli ECOR38 0.57 HEPCGN_17110 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.43 HEPCGN_16350 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 85
Escherichia coli ECRC98 0.57 JDDGAC_21860 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.42 JDDGAC_21150 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Erwinia tracheiphila SCR3 0.57 LU632_RS02230 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.43 LU632_RS22480 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 74
Escherichia coli Nissle 1917 0.57 ECOLIN_RS18085 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.42 ECOLIN_RS18875 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Dickeya dianthicola 67-19 0.57 HGI48_RS01610 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.43 HGI48_RS19225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.58 27
Escherichia fergusonii Becca 0.57 EFB2_00677 Ribosomal RNA small subunit methyltransferase I 0.42 EFB2_00535 Ribosomal RNA small subunit methyltransferase B low > 86
Pectobacterium carotovorum WPP14 0.57 HER17_RS19860 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.43 HER17_RS02215 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_00555 Ribosomal RNA small subunit methyltransferase I 0.43 OHPLBJKB_00415 Ribosomal RNA small subunit methyltransferase B low > 73
Dickeya dianthicola ME23 0.56 DZA65_RS01685 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.43 DZA65_RS20350 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Marinobacter adhaerens HP15 0.56 HP15_554 tetrapyrrole methylase family protein 0.44 HP15_3742 Fmu, rRNA SAM-dependent methyltransferase low > 73
Vibrio cholerae E7946 ATCC 55056 0.56 CSW01_03090 rRNA (cytidine-2'-O-)-methyltransferase 0.47 CSW01_00225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 62
Shewanella loihica PV-4 0.56 Shew_0228 uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq) 0.40 Shew_3738 sun protein (RefSeq) 0.39 4
Rahnella sp. WP5 0.56 EX31_RS12550 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.44 EX31_RS15985 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 89
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS11380 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.37 ABZR86_RS13890 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.53 4
Enterobacter asburiae PDN3 0.55 EX28DRAFT_3195 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.44 EX28DRAFT_0039 16S rRNA (cytosine(967)-C(5))-methyltransferase low > 76
Enterobacter sp. TBS_079 0.55 MPMX20_04050 Ribosomal RNA small subunit methyltransferase I 0.43 MPMX20_04196 Ribosomal RNA small subunit methyltransferase B low > 85
Klebsiella michiganensis M5al 0.55 BWI76_RS24910 rRNA (cytidine-2'-O-)-methyltransferase 0.43 BWI76_RS25680 16S rRNA m5C967 methyltransferase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF1521 rRNA small subunit methyltransferase I 0.43 GFF2390 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 low > 78
Shewanella amazonensis SB2B 0.55 Sama_3353 hypothetical protein (RefSeq) 0.40 Sama_0041 sun protein (RefSeq) low > 62
Shewanella oneidensis MR-1 0.54 SO0301 hypothetical methyltransferase (NCBI ptt file) 0.40 SO0030 sun sun protein (NCBI ptt file) 0.39 2
Shewanella sp. ANA-3 0.53 Shewana3_3879 hypothetical protein (RefSeq) 0.41 Shewana3_0033 sun protein (RefSeq) 0.67 37
Acinetobacter radioresistens SK82 0.53 MPMX26_02282 Ribosomal RNA small subunit methyltransferase I 0.37 MPMX26_03021 Ribosomal RNA small subunit methyltransferase B low > 36
Serratia liquefaciens MT49 0.52 IAI46_22295 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.45 IAI46_23275 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 86
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_11735 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.37 OKGIIK_13790 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 52
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS12190 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.34 LRK54_RS10125 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 59
Lysobacter sp. OAE881 0.52 ABIE51_RS04695 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.38 ABIE51_RS02255 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 62
Pantoea sp. MT58 0.52 IAI47_02850 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.43 IAI47_02280 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 76
Rhodanobacter denitrificans MT42 0.51 LRK55_RS11925 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.34 LRK55_RS09765 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 63
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.4371.1 rRNA small subunit methyltransferase I 0.33 Xcc-8004.4741.1 hypothetical protein low > 74
Kangiella aquimarina DSM 16071 0.49 B158DRAFT_2109 probable S-adenosylmethionine-dependent methyltransferase, YraL family 0.37 B158DRAFT_0396 ribosomal RNA small subunit methyltransferase RsmB low > 40
Herbaspirillum seropedicae SmR1 0.49 HSERO_RS23345 16S rRNA methyltransferase 0.28 HSERO_RS00355 methyltransferase low > 78
Dechlorosoma suillum PS 0.49 Dsui_0251 putative S-adenosylmethionine-dependent methyltransferase, YraL family 0.34 Dsui_0812 ribosomal RNA small subunit methyltransferase RsmB low > 51
Alteromonas macleodii MIT1002 0.48 MIT1002_03113 Ribosomal RNA small subunit methyltransferase I 0.37 MIT1002_00018 Ribosomal RNA small subunit methyltransferase B low > 70
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS00655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.29 QEN71_RS00175 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 153
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS01940 16S rRNA methyltransferase 0.30 BPHYT_RS01475 16S rRNA methyltransferase low > 109
Synechococcus elongatus PCC 7942 0.41 Synpcc7942_0174 hypothetical protein 0.23 Synpcc7942_0962 sun sun protein 0.52 22
Paraburkholderia bryophila 376MFSha3.1 0.41 H281DRAFT_02152 16S rRNA (cytidine1402-2'-O)-methyltransferase 0.29 H281DRAFT_02237 16S rRNA (cytosine967-C5)-methyltransferase 0.39 87
Castellaniella sp019104865 MT123 0.40 ABCV34_RS14320 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.31 ABCV34_RS14225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 48
Cupriavidus basilensis FW507-4G11 0.40 RR42_RS19740 16S rRNA methyltransferase 0.27 RR42_RS20450 16S rRNA methyltransferase low > 128
Paraburkholderia graminis OAS925 0.38 ABIE53_000470 16S rRNA (cytidine1402-2'-O)-methyltransferase 0.29 ABIE53_000392 16S rRNA (cytosine967-C5)-methyltransferase low > 113
Rhizobium sp. OAE497 0.38 ABIE40_RS01370 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.19 ABIE40_RS19140 RsmB/NOP family class I SAM-dependent RNA methyltransferase low > 107
Bosea sp. OAE506 0.38 ABIE41_RS03315 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.20 ABIE41_RS05105 RsmB/NOP family class I SAM-dependent RNA methyltransferase low > 77
Ralstonia solanacearum UW163 0.38 UW163_RS05115 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.30 UW163_RS03790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Ralstonia solanacearum IBSBF1503 0.38 RALBFv3_RS08495 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.30 RALBFv3_RS09790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 76
Agrobacterium fabrum C58 0.37 Atu0302 tetrapyrrole methylase family protein 0.19 Atu2825 Sun protein low > 89
Sinorhizobium meliloti 1021 0.37 SMc00416 hypothetical protein 0.18 SMc04090 sun protein low > 103
Ralstonia sp. UNC404CL21Col 0.37 ABZR87_RS03815 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.33 ABZR87_RS04950 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 80
Azospirillum sp. SherDot2 0.37 MPMX19_02471 Ribosomal RNA small subunit methyltransferase I 0.20 MPMX19_02327 Ribosomal RNA small subunit methyltransferase B low > 112
Ralstonia solanacearum PSI07 0.37 RPSI07_RS08730 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.32 RPSI07_RS23575 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 81
Ralstonia solanacearum GMI1000 0.37 RS_RS16360 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.30 RS_RS00375 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 80
Rhodopseudomonas palustris CGA009 0.36 TX73_001680 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.21 TX73_000155 transcription antitermination factor NusB low > 86
Azospirillum brasilense Sp245 0.36 AZOBR_RS02155 16S rRNA methyltransferase 0.20 AZOBR_RS00235 MFS transporter low > 97
Magnetospirillum magneticum AMB-1 0.34 AMB_RS22780 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.19 AMB_RS00745 MFS transporter low > 64
Caulobacter crescentus NA1000 Δfur 0.34 CCNA_00143 ribosomal RNA small subunit methyltransferase I 0.19 CCNA_00101 16S rRNA m5C methyltransferase RsmB low > 67
Caulobacter crescentus NA1000 0.34 CCNA_00143 ribosomal RNA small subunit methyltransferase I 0.19 CCNA_00101 16S rRNA m5C methyltransferase RsmB low > 66
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF2715 rRNA small subunit methyltransferase I 0.29 GFF1789 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 90
Brevundimonas sp. GW460-12-10-14-LB2 0.31 A4249_RS13300 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.16 A4249_RS13165 RsmB/NOP family class I SAM-dependent RNA methyltransferase — —
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_2755 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.15 Ga0059261_2239 tRNA and rRNA cytosine-C5-methylases low > 68
Mycobacterium tuberculosis H37Rv 0.26 Rv1003 Conserved protein 0.14 Rv1407 Probable Fmu protein (sun protein) low > 58
Rhodospirillum rubrum S1H 0.26 Rru_A3693 Protein of unknown function UPF0011 (NCBI) 0.17 Rru_A3660 tRNA and rRNA cytosine-C5-methylase (NCBI) low > 58
Phaeobacter inhibens DSM 17395 0.26 PGA1_c26730 probable S-adenosylmethionine-dependent methyltransferase, YraL family 0.19 PGA1_c32880 putative ribosomal RNA small subunit methyltransferase B 0.38 6
Desulfovibrio vulgaris Hildenborough JW710 0.23 DVU0832 tetrapyrrole methylase family protein (TIGR) 0.14 DVU3363 sun sun protein (TIGR) low > 55

Not shown: 5 genomes with orthologs for Psest_3270 only; 1 genomes with orthologs for Psest_0021 only