| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas stutzeri RCH2 | 1.0 | Psest_0532 | | tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | 1.0 | Psest_1696 | | hydrolase, TatD family | 0.25 | 15 |
| Pseudomonas sp. S08-1 | 0.88 | OH686_09215 | | tRNA-i(6)A37 thiotransferase enzyme MiaB | 0.87 | OH686_22180 | | Uncharacterized metal-dependent hydrolase YcfH | low | > 80 |
| Pseudomonas fluorescens FW300-N2E3 | 0.85 | AO353_06375 | | (dimethylallyl)adenosine tRNA methylthiotransferase | 0.85 | AO353_01325 | | hydrolase TatD | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.85 | Pf1N1B4_2712 | | tRNA-i(6)A37 methylthiotransferase | 0.81 | Pf1N1B4_420 | | Putative deoxyribonuclease YcfH | low | > 87 |
| Pseudomonas syringae pv. syringae B728a | 0.85 | Psyr_4345 | | tRNA-i(6)A37 thiotransferase enzyme MiaB | 0.84 | Psyr_1655 | | TatD-related deoxyribonuclease | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.85 | Psyr_4345 | | tRNA-i(6)A37 thiotransferase enzyme MiaB | 0.84 | Psyr_1655 | | TatD-related deoxyribonuclease | low | > 86 |
| Pseudomonas fluorescens FW300-N2E2 | 0.85 | Pf6N2E2_5018 | | tRNA-i(6)A37 methylthiotransferase | 0.86 | Pf6N2E2_5960 | | Putative deoxyribonuclease YcfH | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.85 | AO356_15410 | | (dimethylallyl)adenosine tRNA methylthiotransferase | 0.86 | AO356_20205 | | hydrolase TatD | low | > 104 |
| Pseudomonas fluorescens GW456-L13 | 0.85 | PfGW456L13_1380 | | tRNA-i(6)A37 methylthiotransferase | 0.86 | PfGW456L13_2112 | | Putative deoxyribonuclease YcfH | low | > 87 |
| Pseudomonas sp. RS175 | 0.85 | PFR28_03848 | | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | 0.84 | PFR28_03002 | | putative metal-dependent hydrolase YcfH | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.85 | PFLU_RS26555 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.86 | PFLU_RS23020 | | TatD family hydrolase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.85 | PFLU_RS26555 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.86 | PFLU_RS23020 | | TatD family hydrolase | low | > 109 |
| Pseudomonas simiae WCS417 | 0.85 | PS417_24625 | | (dimethylallyl)adenosine tRNA methylthiotransferase | 0.85 | PS417_21405 | | hydrolase TatD | low | > 88 |
| Kangiella aquimarina DSM 16071 | 0.71 | B158DRAFT_0099 | | tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | 0.58 | B158DRAFT_1745 | | hydrolase, TatD family | low | > 40 |
| Marinobacter adhaerens HP15 | 0.71 | HP15_2466 | | tRNA-i(6)A37 thiotransferase enzyme MiaB | 0.33 | HP15_3420 | | hydrolase, TatD family | low | > 73 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.69 | GFF4579 | | tRNA-i(6)A37 methylthiotransferase | 0.45 | GFF3382 | | Putative deoxyribonuclease YcfH | low | > 78 |
| Escherichia fergusonii Becca | 0.69 | EFB2_03438 | | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | 0.45 | EFB2_02875 | | putative metal-dependent hydrolase YcfH | low | > 86 |
| Escherichia coli ECRC101 | 0.69 | OKFHMN_07225 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.46 | OKFHMN_03540 | ycfH | metal-dependent hydrolase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.69 | OHPLBJKB_03051 | | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | 0.46 | OHPLBJKB_02566 | | putative metal-dependent hydrolase YcfH | low | > 73 |
| Escherichia coli ECOR27 | 0.69 | NOLOHH_23605 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.46 | NOLOHH_21070 | ycfH | metal-dependent hydrolase | — | — |
| Escherichia coli ECOR38 | 0.69 | HEPCGN_01005 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.46 | HEPCGN_23940 | ycfH | metal-dependent hydrolase | low | > 85 |
| Escherichia coli ECRC98 | 0.69 | JDDGAC_10870 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.46 | JDDGAC_07200 | ycfH | metal-dependent hydrolase | — | — |
| Escherichia coli ECRC101 | 0.69 | MCAODC_26440 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.46 | MCAODC_22900 | ycfH | metal-dependent hydrolase | — | — |
| Escherichia coli ECRC102 | 0.69 | NIAGMN_05280 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.46 | NIAGMN_24290 | ycfH | metal-dependent hydrolase | — | — |
| Escherichia coli ECRC99 | 0.69 | KEDOAH_20745 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.46 | KEDOAH_24215 | ycfH | metal-dependent hydrolase | — | — |
| Escherichia coli BW25113 | 0.69 | b0661 | miaB | isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) | 0.46 | b1100 | ycfH | predicted metallodependent hydrolase (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.69 | ECD_00629 | | tRNA-i(6)A37 methylthiotransferase | 0.46 | ECD_01096 | | putative DNase | low | > 60 |
| Klebsiella michiganensis M5al | 0.69 | BWI76_RS08135 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.48 | BWI76_RS11125 | | metal-dependent hydrolase | — | — |
| Escherichia coli ECRC62 | 0.69 | BNILDI_21610 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.46 | BNILDI_19230 | ycfH | metal-dependent hydrolase | — | — |
| Escherichia coli Nissle 1917 | 0.69 | ECOLIN_RS03555 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.46 | ECOLIN_RS06350 | | metal-dependent hydrolase | — | — |
| Pectobacterium carotovorum WPP14 | 0.69 | HER17_RS15165 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.47 | HER17_RS08685 | | metal-dependent hydrolase | low | > 75 |
| Pantoea sp. MT58 | 0.68 | IAI47_13945 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.48 | IAI47_12035 | | metal-dependent hydrolase | 0.23 | 54 |
| Shewanella amazonensis SB2B | 0.68 | Sama_2575 | | tRNA-i(6)A37 modification enzyme MiaB (RefSeq) | 0.53 | Sama_2040 | | TatD family hydrolase (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.68 | Shewana3_1008 | | tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) | 0.49 | Shewana3_1769 | | TatD family hydrolase (RefSeq) | low | > 73 |
| Erwinia tracheiphila SCR3 | 0.68 | LU632_RS16305 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.48 | LU632_RS14785 | | metal-dependent hydrolase | low | > 74 |
| Alteromonas macleodii MIT1002 | 0.68 | MIT1002_01480 | | (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB | 0.51 | MIT1002_01740 | | putative deoxyribonuclease YcfH | low | > 70 |
| Shewanella oneidensis MR-1 | 0.68 | SO1181 | miaB | tRNA-i(6)A37 modification enzyme MiaB (NCBI ptt file) | 0.50 | SO2610 | | hydrolase, TatD family (NCBI ptt file) | low | > 76 |
| Dickeya dianthicola 67-19 | 0.68 | HGI48_RS06295 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.48 | HGI48_RS13150 | | metal-dependent hydrolase | low | > 71 |
| Enterobacter asburiae PDN3 | 0.68 | EX28DRAFT_2310 | | tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | 0.46 | EX28DRAFT_1829 | | hydrolase, TatD family | low | > 76 |
| Dickeya dadantii 3937 | 0.67 | DDA3937_RS06250 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.48 | DDA3937_RS13085 | | metal-dependent hydrolase | low | > 74 |
| Serratia liquefaciens MT49 | 0.67 | IAI46_06025 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.50 | IAI46_09825 | | metal-dependent hydrolase | low | > 86 |
| Dickeya dianthicola ME23 | 0.67 | DZA65_RS06640 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.48 | DZA65_RS13620 | | metal-dependent hydrolase | low | > 75 |
| Shewanella loihica PV-4 | 0.67 | Shew_2923 | | tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) | 0.52 | Shew_1582 | | TatD family hydrolase (RefSeq) | low | > 60 |
| Enterobacter sp. TBS_079 | 0.67 | MPMX20_01311 | | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | 0.46 | MPMX20_01780 | | putative metal-dependent hydrolase YcfH | low | > 85 |
| Vibrio cholerae E7946 ATCC 55056 | 0.67 | CSW01_04915 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.50 | CSW01_10060 | | YchF/TatD family DNA exonuclease | low | > 62 |
| Rahnella sp. WP5 | 0.66 | EX31_RS23205 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.50 | EX31_RS24470 | | metal-dependent hydrolase | low | > 89 |
| Dechlorosoma suillum PS | 0.65 | Dsui_1194 | | tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | 0.48 | Dsui_2652 | | hydrolase, TatD family | low | > 51 |
| Paraburkholderia sabiae LMG 24235 | 0.64 | QEN71_RS02195 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.45 | QEN71_RS21805 | | TatD family hydrolase | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.63 | BPHYT_RS16535 | | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | 0.44 | BPHYT_RS09640 | | DNAase | low | > 109 |
| Castellaniella sp019104865 MT123 | 0.63 | ABCV34_RS15345 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.48 | ABCV34_RS03960 | | TatD family hydrolase | low | > 48 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.63 | H281DRAFT_04239 | | tRNA-i(6)A37 thiotransferase enzyme MiaB | 0.44 | H281DRAFT_00931 | | TatD DNase family protein | low | > 103 |
| Ralstonia solanacearum PSI07 | 0.63 | RPSI07_RS21380 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.47 | RPSI07_RS16465 | | TatD family deoxyribonuclease | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.62 | RS_RS02645 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.47 | RS_RS09020 | | TatD family deoxyribonuclease | low | > 80 |
| Acinetobacter radioresistens SK82 | 0.62 | MPMX26_02667 | | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | 0.46 | MPMX26_01224 | | putative metal-dependent hydrolase YcfH | low | > 36 |
| Ralstonia solanacearum UW163 | 0.62 | UW163_RS01760 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.47 | UW163_RS14320 | | TatD family deoxyribonuclease | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.62 | RALBFv3_RS11825 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.47 | RALBFv3_RS01010 | | TatD family deoxyribonuclease | low | > 76 |
| Ralstonia sp. UNC404CL21Col | 0.62 | ABZR87_RS07780 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.47 | ABZR87_RS12460 | | TatD family hydrolase | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.62 | RR42_RS02855 | | dimethylallyladenosine tRNA methylthiotransferase | 0.49 | RR42_RS10885 | | DNAase | low | > 128 |
| Herbaspirillum seropedicae SmR1 | 0.62 | HSERO_RS03615 | | (dimethylallyl)adenosine tRNA methylthiotransferase | 0.46 | HSERO_RS12995 | | DNAase | low | > 78 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.60 | GFF613 | | tRNA-i(6)A37 methylthiotransferase | 0.41 | GFF4665 | | Putative deoxyribonuclease YcfH | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.60 | Ac3H11_4008 | | tRNA-i(6)A37 methylthiotransferase | 0.41 | Ac3H11_2488 | | Putative deoxyribonuclease YcfH | low | > 79 |
| Variovorax sp. SCN45 | 0.60 | GFF7320 | | tRNA-i(6)A37 methylthiotransferase (EC 2.8.4.3) | 0.43 | GFF34 | | Uncharacterized metal-dependent hydrolase YcfH | low | > 127 |
| Variovorax sp. OAS795 | 0.60 | ABID97_RS06475 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.43 | ABID97_RS16000 | | TatD family hydrolase | low | > 91 |
| Azospirillum sp. SherDot2 | 0.48 | MPMX19_02511 | | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | 0.42 | MPMX19_01469 | | putative metal-dependent hydrolase YcfH | low | > 112 |
| Dinoroseobacter shibae DFL-12 | 0.48 | Dshi_1019 | | RNA modification enzyme, MiaB family (RefSeq) | 0.35 | Dshi_0920 | | hydrolase, TatD family (RefSeq) | low | > 64 |
| Bosea sp. OAE506 | 0.46 | ABIE41_RS04495 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.39 | ABIE41_RS15945 | | TatD family hydrolase | low | > 77 |
| Azospirillum brasilense Sp245 | 0.46 | AZOBR_RS01475 | | (dimethylallyl)adenosine tRNA methylthiotransferase | 0.43 | AZOBR_RS08795 | | LuxR family transcriptional regulator | low | > 97 |
| Magnetospirillum magneticum AMB-1 | 0.45 | AMB_RS22585 | | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | 0.42 | AMB_RS12295 | | TatD family deoxyribonuclease | low | > 64 |
| Sinorhizobium meliloti 1021 | 0.45 | SMc01115 | | (dimethylallyl)adenosine tRNA methylthiotransferase | 0.40 | SMc01193 | | hypothetical protein | low | > 103 |
| Caulobacter crescentus NA1000 Δfur | 0.45 | CCNA_00054 | | tRNA 2-methylthioadenosine synthase | 0.29 | CCNA_01898 | | Mg-dependent Dnase TatD | low | > 67 |
| Caulobacter crescentus NA1000 | 0.45 | CCNA_00054 | | tRNA 2-methylthioadenosine synthase | 0.29 | CCNA_01898 | | Mg-dependent Dnase TatD | low | > 66 |
| Phaeobacter inhibens DSM 17395 | 0.44 | PGA1_c04710 | | (dimethylallyl)adenosine tRNA methylthiotransferase MiaB | 0.40 | PGA1_c07990 | | putative hydrolase, TatD family | low | > 62 |
| Rhizobium sp. OAE497 | 0.44 | ABIE40_RS01705 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.34 | ABIE40_RS09480 | | TatD family hydrolase | low | > 107 |
| Agrobacterium fabrum C58 | 0.44 | Atu0356 | | miaB protein | 0.36 | Atu1495 | | hypothetical protein | low | > 89 |
| Rhodospirillum rubrum S1H | 0.43 | Rru_A3770 | | tRNA-i(6)A37 modification enzyme MiaB (NCBI) | 0.41 | Rru_A1700 | | TatD-related deoxyribonuclease (NCBI) | low | > 58 |
| Rhodopseudomonas palustris CGA009 | 0.42 | TX73_002325 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.41 | TX73_014390 | | TatD family hydrolase | low | > 86 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.41 | A4249_RS14720 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.33 | A4249_RS04755 | | TatD family hydrolase | low | > 48 |
| Sphingomonas koreensis DSMZ 15582 | 0.39 | Ga0059261_1604 | | tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | 0.41 | Ga0059261_0126 | | hydrolase, TatD family | low | > 68 |
| Synechococcus elongatus PCC 7942 | 0.37 | Synpcc7942_2374 | | tRNA-i(6)A37 thiotransferase enzyme MiaB | 0.30 | Synpcc7942_1521 | tatD | Sec-independent protein translocase TatD | low | > 38 |
| Mycobacterium tuberculosis H37Rv | 0.36 | Rv2733c | | Conserved hypothetical alanine, arginine-rich protein | 0.27 | Rv1008 | | Probable deoxyribonuclease TatD (YJJV protein) | low | > 58 |
| Fusobacterium nucleatum SB010 | 0.34 | HUW76_07655 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.31 | HUW76_08855 | | TatD family hydrolase | low | > 35 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.34 | DVU0984 | miaB | tRNA-i(6)A37 modification enzyme MiaB (TIGR) | 0.25 | DVU3202 | | hydrolase, TatD family (TIGR) | low | > 55 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.33 | ABZR88_RS18330 | | MiaB/RimO family radical SAM methylthiotransferase | 0.24 | ABZR88_RS21615 | | TatD family hydrolase | low | > 71 |
| Desulfovibrio vulgaris Miyazaki F | 0.33 | DvMF_1330 | | RNA modification enzyme, MiaB family (RefSeq) | 0.27 | DvMF_2230 | | hydrolase, TatD family (RefSeq) | low | > 51 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.31 | CA265_RS21675 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.27 | CA265_RS25085 | | hydrolase TatD | low | > 88 |
| Methanococcus maripaludis S2 | 0.20 | MMP_RS02195 | | tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase | 0.18 | MMP_RS08080 | | YchF/TatD family DNA exonuclease | low | > 25 |
| Methanococcus maripaludis JJ | 0.19 | MMJJ_RS03110 | | tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase | 0.18 | MMJJ_RS06285 | | YchF/TatD family DNA exonuclease | low | > 28 |
Not shown: 15 genomes with orthologs for Psest_0532 only; 2 genomes with orthologs for Psest_1696 only