| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Marinobacter adhaerens HP15 | 1.0 | HP15_527 | | pseudouridine synthase, RluA family | 1.0 | HP15_1568 | | excinuclease ABC subunit C | 0.44 | 12 |
| Pseudomonas sp. S08-1 | 0.61 | OH686_16410 | | LSU rRNA pseudouridine(1911/1915/1917) synthase | 0.56 | OH686_00340 | | excinuclease ABC subunit C | low | > 80 |
| Pseudomonas putida KT2440 | 0.60 | PP_0623 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | 0.56 | PP_4098 | | UvrABC system protein C | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.60 | AO356_15925 | | ribosomal large subunit pseudouridine synthase D | 0.57 | AO356_00350 | | excinuclease ABC subunit C | low | > 104 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.60 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 0.57 | Psyr_2896 | | Excinuclease ABC subunit C | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.60 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 0.57 | Psyr_2896 | | Excinuclease ABC subunit C | low | > 86 |
| Pseudomonas fluorescens FW300-N2E3 | 0.59 | AO353_14220 | | ribosomal large subunit pseudouridine synthase D | 0.57 | AO353_21835 | | excinuclease ABC subunit C | low | > 101 |
| Pseudomonas fluorescens SBW25-INTG | 0.59 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.57 | PFLU_RS10770 | | excinuclease ABC subunit UvrC | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.59 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.57 | PFLU_RS10770 | | excinuclease ABC subunit UvrC | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.59 | Pf6N2E2_5127 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.55 | Pf6N2E2_2021 | | Excinuclease ABC subunit C | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.59 | PfGW456L13_1493 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.56 | PfGW456L13_2886 | | Excinuclease ABC subunit C | — | — |
| Pseudomonas sp. RS175 | 0.59 | PFR28_03748 | | Ribosomal large subunit pseudouridine synthase D | 0.55 | PFR28_01411 | | UvrABC system protein C | low | > 88 |
| Pseudomonas stutzeri RCH2 | 0.59 | Psest_0709 | | pseudouridine synthase, RluA family | 0.58 | Psest_2259 | | excinuclease ABC, C subunit | low | > 67 |
| Pseudomonas simiae WCS417 | 0.59 | PS417_03820 | | ribosomal large subunit pseudouridine synthase D | 0.57 | PS417_10725 | | excinuclease ABC subunit C | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.59 | Pf1N1B4_2822 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.57 | Pf1N1B4_5618 | | Excinuclease ABC subunit C | — | — |
| Alteromonas macleodii MIT1002 | 0.58 | MIT1002_02679 | | Ribosomal large subunit pseudouridine synthase D | 0.48 | MIT1002_02153 | | Excinuclease ABC subunit C | low | > 70 |
| Shewanella loihica PV-4 | 0.56 | Shew_2950 | | RluA family pseudouridine synthase (RefSeq) | 0.48 | Shew_1825 | uvrC | excinuclease ABC subunit C (RefSeq) | low | > 60 |
| Shewanella sp. ANA-3 | 0.55 | Shewana3_3171 | | ribosomal large subunit pseudouridine synthase D (RefSeq) | 0.49 | Shewana3_1609 | uvrC | excinuclease ABC subunit C (RefSeq) | low | > 73 |
| Dickeya dadantii 3937 | 0.55 | DDA3937_RS16110 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.49 | DDA3937_RS13700 | | excinuclease ABC subunit UvrC | low | > 74 |
| Kangiella aquimarina DSM 16071 | 0.55 | B158DRAFT_2532 | | Pseudouridylate synthases, 23S RNA-specific | 0.47 | B158DRAFT_1273 | | Excinuclease ABC subunit C | low | > 40 |
| Dickeya dianthicola ME23 | 0.54 | DZA65_RS17330 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.49 | DZA65_RS14285 | | excinuclease ABC subunit UvrC | low | > 75 |
| Dickeya dianthicola 67-19 | 0.54 | HGI48_RS16235 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.49 | HGI48_RS13795 | | excinuclease ABC subunit UvrC | low | > 71 |
| Shewanella amazonensis SB2B | 0.54 | Sama_2605 | | pseudouridylate synthase (RefSeq) | 0.48 | Sama_1608 | uvrC | excinuclease ABC subunit C (RefSeq) | — | — |
| Rahnella sp. WP5 | 0.54 | EX31_RS07570 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.49 | EX31_RS24150 | | excinuclease ABC subunit UvrC | low | > 89 |
| Erwinia tracheiphila SCR3 | 0.54 | LU632_RS16945 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.50 | LU632_RS10195 | uvrC | excinuclease ABC subunit UvrC | low | > 74 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.53 | Xcc-8004.1362.1 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.45 | Xcc-8004.2477.1 | | Excinuclease ABC subunit C | low | > 74 |
| Serratia liquefaciens MT49 | 0.53 | IAI46_03985 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.50 | IAI46_09210 | | excinuclease ABC subunit UvrC | low | > 86 |
| Lysobacter sp. OAE881 | 0.53 | ABIE51_RS04885 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.44 | ABIE51_RS12455 | | excinuclease ABC subunit UvrC | low | > 62 |
| Klebsiella michiganensis M5al | 0.53 | BWI76_RS21450 | | 23S rRNA pseudouridine(1911/1915/1917) synthase | 0.50 | BWI76_RS18330 | | excinuclease ABC subunit C | low | > 92 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.53 | GFF4182 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.50 | GFF1700 | | Excinuclease ABC subunit C | low | > 78 |
| Escherichia coli BW25113 | 0.53 | b2594 | rluD | 23S rRNA pseudouridine synthase (NCBI) | 0.51 | b1913 | uvrC | excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) | — | — |
| Escherichia coli ECRC62 | 0.53 | BNILDI_11730 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.51 | BNILDI_15235 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Escherichia coli Nissle 1917 | 0.53 | ECOLIN_RS14675 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.51 | ECOLIN_RS10895 | | excinuclease ABC subunit UvrC | low | > 52 |
| Escherichia fergusonii Becca | 0.53 | EFB2_01296 | | Ribosomal large subunit pseudouridine synthase D | 0.51 | EFB2_02033 | | UvrABC system protein C | low | > 86 |
| Escherichia coli ECOR27 | 0.53 | NOLOHH_12925 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.51 | NOLOHH_16445 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.53 | OHPLBJKB_01112 | | Ribosomal large subunit pseudouridine synthase D | 0.51 | OHPLBJKB_01816 | | UvrABC system protein C | low | > 73 |
| Escherichia coli BL21 | 0.53 | ECD_02484 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | 0.51 | ECD_01878 | | excinuclease UvrABC, endonuclease subunit | low | > 60 |
| Enterobacter asburiae PDN3 | 0.53 | EX28DRAFT_2695 | | pseudouridine synthase, RluA family | 0.49 | EX28DRAFT_0634 | | Excinuclease ABC subunit C | low | > 76 |
| Escherichia coli ECRC101 | 0.53 | OKFHMN_21250 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.51 | OKFHMN_25825 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Escherichia coli ECRC98 | 0.53 | JDDGAC_24915 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.51 | JDDGAC_00415 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.53 | LRK54_RS04965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.51 | LRK54_RS00380 | | excinuclease ABC subunit UvrC | 0.54 | 24 |
| Pectobacterium carotovorum WPP14 | 0.53 | HER17_RS05400 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.50 | HER17_RS07715 | | excinuclease ABC subunit UvrC | low | > 75 |
| Escherichia coli ECRC101 | 0.53 | MCAODC_11780 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.51 | MCAODC_19565 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Escherichia coli ECRC99 | 0.53 | KEDOAH_06970 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.51 | KEDOAH_02265 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Escherichia coli ECRC102 | 0.53 | NIAGMN_19020 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.51 | NIAGMN_02225 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Rhodanobacter denitrificans MT42 | 0.53 | LRK55_RS04745 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.51 | LRK55_RS00120 | | excinuclease ABC subunit UvrC | low | > 63 |
| Escherichia coli ECOR38 | 0.53 | HEPCGN_20375 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.51 | HEPCGN_04180 | uvrC | excinuclease ABC subunit UvrC | low | > 85 |
| Enterobacter sp. TBS_079 | 0.52 | MPMX20_03463 | | Ribosomal large subunit pseudouridine synthase D | 0.50 | MPMX20_02838 | | UvrABC system protein C | low | > 85 |
| Vibrio cholerae E7946 ATCC 55056 | 0.51 | CSW01_03695 | | ribosomal large subunit pseudouridine synthase D | 0.49 | CSW01_06140 | | excinuclease ABC subunit C | low | > 62 |
| Pantoea sp. MT58 | 0.51 | IAI47_04425 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.50 | IAI47_12465 | | excinuclease ABC subunit UvrC | low | > 76 |
| Dyella japonica UNC79MFTsu3.2 | 0.51 | ABZR86_RS10965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.50 | ABZR86_RS02245 | | excinuclease ABC subunit UvrC | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.51 | OKGIIK_01790 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.50 | OKGIIK_06930 | uvrC | excinuclease ABC subunit UvrC | low | > 52 |
| Dechlorosoma suillum PS | 0.47 | Dsui_2530 | | pseudouridine synthase, RluA family | 0.46 | Dsui_2470 | | excinuclease ABC, C subunit | low | > 51 |
| Ralstonia sp. UNC404CL21Col | 0.45 | ABZR87_RS13315 | | RluA family pseudouridine synthase | 0.43 | ABZR87_RS10245 | | excinuclease ABC subunit UvrC | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.44 | RPSI07_RS15970 | | RluA family pseudouridine synthase | 0.42 | RPSI07_RS18935 | | excinuclease ABC subunit UvrC | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.43 | RS_RS08205 | | RluA family pseudouridine synthase | 0.41 | RS_RS05305 | | excinuclease ABC subunit UvrC | low | > 80 |
| Acinetobacter radioresistens SK82 | 0.43 | MPMX26_00735 | | Ribosomal large subunit pseudouridine synthase D | 0.44 | MPMX26_00228 | | UvrABC system protein C | low | > 36 |
| Ralstonia solanacearum IBSBF1503 | 0.43 | RALBFv3_RS01520 | | RluA family pseudouridine synthase | 0.42 | RALBFv3_RS14525 | | excinuclease ABC subunit UvrC | low | > 76 |
| Ralstonia solanacearum UW163 | 0.43 | UW163_RS14830 | | RluA family pseudouridine synthase | 0.42 | UW163_RS11990 | | excinuclease ABC subunit UvrC | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.38 | Ga0059261_0664 | | pseudouridine synthase, RluA family | 0.36 | Ga0059261_3186 | | Excinuclease ABC subunit C | low | > 68 |
| Rhodopseudomonas palustris CGA009 | 0.37 | TX73_001905 | | RluA family pseudouridine synthase | 0.36 | TX73_006010 | | excinuclease ABC subunit UvrC | low | > 86 |
| Acidovorax sp. GW101-3H11 | 0.37 | Ac3H11_1787 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.37 | Ac3H11_373 | | Excinuclease ABC subunit C | low | > 79 |
| Rhizobium sp. OAE497 | 0.37 | ABIE40_RS14790 | | RluA family pseudouridine synthase | 0.36 | ABIE40_RS06500 | | excinuclease ABC subunit UvrC | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.37 | GFF4870 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.37 | GFF3847 | | Excinuclease ABC subunit C | — | — |
| Azospirillum sp. SherDot2 | 0.36 | MPMX19_05442 | | Ribosomal large subunit pseudouridine synthase D | 0.37 | MPMX19_01070 | | UvrABC system protein C | low | > 112 |
| Synechococcus elongatus PCC 7942 | 0.36 | Synpcc7942_1112 | | ribosomal large subunit pseudouridine synthase D | 0.25 | Synpcc7942_1945 | uvrC | excinuclease ABC subunit C | low | > 38 |
| Castellaniella sp019104865 MT123 | 0.36 | ABCV34_RS01885 | | RluA family pseudouridine synthase | 0.41 | ABCV34_RS06980 | | excinuclease ABC subunit UvrC | low | > 48 |
| Agrobacterium fabrum C58 | 0.35 | Atu2443 | | ribosomal large subunit pseudouridine synthase, RluD subfamily | 0.37 | Atu1129 | | excinuclease ABC chain C | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.35 | HMPREF1058_RS08615 | | RluA family pseudouridine synthase | 0.25 | HMPREF1058_RS11525 | | excinuclease ABC subunit UvrC | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.35 | ABI39_RS02845 | | RluA family pseudouridine synthase | 0.25 | ABI39_RS05415 | | excinuclease ABC subunit UvrC | low | > 72 |
| Rhodospirillum rubrum S1H | 0.35 | Rru_A1111 | | Pseudouridine synthase, RluD (NCBI) | 0.36 | Rru_A2220 | | Excinuclease ABC, C subunit (NCBI) | low | > 58 |
| Sinorhizobium meliloti 1021 | 0.35 | SMc00647 | | ribosomal large subunit pseudouridine synthase | 0.38 | SMc00602 | | excinuclease ABC subunit C | low | > 103 |
| Magnetospirillum magneticum AMB-1 | 0.35 | AMB_RS16095 | | RluA family pseudouridine synthase | 0.35 | AMB_RS19240 | | UvrABC system protein C | low | > 64 |
| Variovorax sp. SCN45 | 0.35 | GFF988 | | LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) | 0.39 | GFF2859 | | Excinuclease ABC subunit C | low | > 127 |
| Variovorax sp. OAS795 | 0.34 | ABID97_RS14190 | | RluA family pseudouridine synthase | 0.40 | ABID97_RS10635 | | excinuclease ABC subunit UvrC | low | > 91 |
| Bacteroides ovatus ATCC 8483 | 0.33 | BACOVA_03528 | | pseudouridine synthase, RluA family | 0.25 | BACOVA_01365 | | excinuclease ABC, C subunit | low | > 94 |
| Caulobacter crescentus NA1000 Δfur | 0.33 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | 0.32 | CCNA_02975 | | excinuclease ABC subunit C | low | > 67 |
| Caulobacter crescentus NA1000 | 0.33 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | 0.32 | CCNA_02975 | | excinuclease ABC subunit C | low | > 66 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.33 | BT3712 | | ribosomal large subunit pseudouridine synthase D (NCBI ptt file) | 0.25 | BT3266 | | excinuclease ABC subunit C (NCBI ptt file) | low | > 81 |
| Parabacteroides merdae CL09T00C40 | 0.33 | HMPREF1078_RS12640 | | RluA family pseudouridine synthase | 0.27 | HMPREF1078_RS06310 | | excinuclease ABC subunit UvrC | 0.51 | 27 |
| Phaeobacter inhibens DSM 17395 | 0.32 | PGA1_c09000 | | ribosomal large subunit pseudouridine synthase D | 0.38 | PGA1_c02880 | | uvrABC system protein C | low | > 62 |
| Bacteroides stercoris CC31F | 0.32 | HMPREF1181_RS03250 | | RluA family pseudouridine synthase | 0.25 | HMPREF1181_RS02095 | | excinuclease ABC subunit UvrC | low | > 56 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.32 | Echvi_0642 | | pseudouridine synthase, RluA family | 0.26 | Echvi_0619 | | excinuclease ABC, C subunit | low | > 79 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.32 | CA264_15205 | | RNA pseudouridine synthase | 0.23 | CA264_16350 | | excinuclease ABC subunit C | low | > 74 |
| Dinoroseobacter shibae DFL-12 | 0.31 | Dshi_2610 | | pseudouridine synthase, RluA family (RefSeq) | 0.38 | Dshi_0644 | | excinuclease ABC, C subunit (RefSeq) | low | > 64 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.31 | CA265_RS14415 | | pseudouridine synthase | 0.24 | CA265_RS18110 | | excinuclease ABC subunit C | low | > 88 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.31 | ABZR88_RS03985 | | RluA family pseudouridine synthase | 0.24 | ABZR88_RS04150 | | excinuclease ABC subunit UvrC | low | > 71 |
| Fusobacterium nucleatum SB010 | 0.30 | HUW76_08575 | | RluA family pseudouridine synthase | 0.27 | HUW76_06695 | | excinuclease ABC subunit UvrC | low | > 35 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.28 | A4249_RS10060 | | RluA family pseudouridine synthase | 0.34 | A4249_RS01670 | | excinuclease ABC subunit UvrC | low | > 48 |
| Mycobacterium tuberculosis H37Rv | 0.22 | Rv1540 | | Conserved hypothetical protein member of yabO/yceC/yfiI family | 0.28 | Rv1420 | | Probable excinuclease ABC (subunit C-nuclease) UvrC | — | — |
| Methanococcus maripaludis JJ | 0.20 | MMJJ_RS09155 | | RluA family pseudouridine synthase | 0.25 | MMJJ_RS01240 | | excinuclease ABC subunit UvrC | low | > 28 |
| Methanococcus maripaludis S2 | 0.20 | MMP_RS05225 | | RluA family pseudouridine synthase | 0.25 | MMP_RS03810 | | excinuclease ABC subunit UvrC | low | > 25 |
Not shown: 2 genomes with orthologs for HP15_527 only; 5 genomes with orthologs for HP15_1568 only