Conservation of cofitness between HP15_3742 and HP15_1478 in Marinobacter adhaerens HP15

85 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Marinobacter adhaerens HP15 1.0 HP15_3742 Fmu, rRNA SAM-dependent methyltransferase 1.0 HP15_1478 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.43 10
Pseudomonas stutzeri RCH2 0.45 Psest_0021 ribosomal RNA small subunit methyltransferase RsmB 0.63 Psest_1241 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 67
Vibrio cholerae E7946 ATCC 55056 0.42 CSW01_00225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.62 CSW01_03840 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 62
Pseudomonas putida KT2440 0.42 PP_0066 Ribosomal RNA small subunit methyltransferase B 0.62 PP_0832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 96
Pseudomonas sp. S08-1 0.42 OH686_12525 16S rRNA (cytosine(967)-C(5))-methyltransferase 0.62 OH686_17425 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 80
Serratia liquefaciens MT49 0.42 IAI46_23275 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.59 IAI46_04835 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.42 GFF2390 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 0.59 GFF4304 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 78
Escherichia coli ECRC62 0.41 BNILDI_02200 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.60 BNILDI_22860 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli ECOR27 0.41 NOLOHH_09320 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.60 NOLOHH_01445 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.41 OHPLBJKB_00415 Ribosomal RNA small subunit methyltransferase B 0.60 OHPLBJKB_03271 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 73
Escherichia coli ECRC101 0.41 MCAODC_08050 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.60 MCAODC_27735 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli BL21 0.41 ECD_03139 16S rRNA m(5)C967 methyltransferase, SAM-dependent 0.60 ECD_00353 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 60
Escherichia coli ECRC101 0.41 OKFHMN_17520 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.60 OKFHMN_08510 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli ECRC98 0.41 JDDGAC_21150 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.60 JDDGAC_12165 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli ECRC102 0.41 NIAGMN_15290 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.60 NIAGMN_06565 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli BW25113 0.41 b3289 rsmB 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) 0.60 b0405 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI) low > 76
Escherichia coli ECRC99 0.41 KEDOAH_10620 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.60 KEDOAH_19455 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Pseudomonas syringae pv. syringae B728a 0.41 Psyr_0017 16S rRNA m(5)C-967 methyltransferase 0.60 Psyr_1227 Queuosine biosynthesis protein low > 86
Escherichia coli ECOR38 0.41 HEPCGN_16350 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.60 HEPCGN_07150 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 85
Pseudomonas syringae pv. syringae B728a ΔmexB 0.41 Psyr_0017 16S rRNA m(5)C-967 methyltransferase 0.60 Psyr_1227 Queuosine biosynthesis protein low > 86
Klebsiella michiganensis M5al 0.41 BWI76_RS25680 16S rRNA m5C967 methyltransferase 0.60 BWI76_RS06295 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 92
Escherichia fergusonii Becca 0.41 EFB2_00535 Ribosomal RNA small subunit methyltransferase B 0.60 EFB2_03652 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 86
Escherichia coli Nissle 1917 0.41 ECOLIN_RS18875 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.60 ECOLIN_RS02440 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_10630 16S rRNA methyltransferase 0.62 AO353_15785 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 101
Pectobacterium carotovorum WPP14 0.40 HER17_RS02215 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.59 HER17_RS15995 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 75
Pseudomonas fluorescens FW300-N2C3 0.40 AO356_11275 16S rRNA methyltransferase 0.61 AO356_06695 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 104
Pantoea sp. MT58 0.40 IAI47_02280 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.59 IAI47_14810 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 76
Erwinia tracheiphila SCR3 0.40 LU632_RS22480 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.59 LU632_RS18485 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 74
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_1914 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.62 Pf1N1B4_3005 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 87
Enterobacter asburiae PDN3 0.40 EX28DRAFT_0039 16S rRNA (cytosine(967)-C(5))-methyltransferase 0.61 EX28DRAFT_2566 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 76
Pseudomonas fluorescens FW300-N2E2 0.40 Pf6N2E2_4121 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.60 Pf6N2E2_3199 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 103
Dickeya dadantii 3937 0.40 DDA3937_RS19135 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.59 DDA3937_RS05465 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 74
Pseudomonas sp. RS175 0.40 PFR28_04663 Ribosomal RNA small subunit methyltransferase B 0.61 PFR28_00276 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 88
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_652 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.61 PfGW456L13_4883 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 87
Rahnella sp. WP5 0.39 EX31_RS15985 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.59 EX31_RS22090 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 89
Pseudomonas fluorescens SBW25 0.39 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.60 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.63 10
Enterobacter sp. TBS_079 0.39 MPMX20_04196 Ribosomal RNA small subunit methyltransferase B 0.61 MPMX20_00996 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 85
Shewanella loihica PV-4 0.39 Shew_3738 sun protein (RefSeq) 0.62 Shew_2338 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase (RefSeq) — —
Pseudomonas fluorescens SBW25-INTG 0.39 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.60 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 109
Dickeya dianthicola 67-19 0.39 HGI48_RS19225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.59 HGI48_RS05525 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 71
Pseudomonas simiae WCS417 0.39 PS417_00085 16S rRNA methyltransferase 0.60 PS417_23250 S-adenosylmethionine tRNA ribosyltransferase low > 88
Dickeya dianthicola ME23 0.39 DZA65_RS20350 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.59 DZA65_RS05850 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 75
Shewanella sp. ANA-3 0.38 Shewana3_0033 sun protein (RefSeq) 0.63 Shewana3_1434 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.37 SO0030 sun sun protein (NCBI ptt file) 0.64 SO3114 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.37 Sama_0041 sun protein (RefSeq) 0.62 Sama_2194 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) low > 62
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS04950 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.49 ABZR87_RS01275 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 80
Kangiella aquimarina DSM 16071 0.35 B158DRAFT_0396 ribosomal RNA small subunit methyltransferase RsmB 0.61 B158DRAFT_2515 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 40
Ralstonia solanacearum PSI07 0.35 RPSI07_RS23575 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.51 RPSI07_RS11620 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 81
Dechlorosoma suillum PS 0.34 Dsui_0812 ribosomal RNA small subunit methyltransferase RsmB 0.51 Dsui_3322 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 51
Alteromonas macleodii MIT1002 0.34 MIT1002_00018 Ribosomal RNA small subunit methyltransferase B 0.61 MIT1002_02814 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 70
Lysobacter sp. OAE881 0.34 ABIE51_RS02255 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.52 ABIE51_RS15025 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 62
Rhodanobacter sp. FW510-T8 0.33 OKGIIK_13790 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.54 OKGIIK_10005 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 52
Ralstonia solanacearum GMI1000 0.33 RS_RS00375 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.51 RS_RS13570 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 80
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS09790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.51 RALBFv3_RS05680 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.41 25
Ralstonia solanacearum UW163 0.33 UW163_RS03790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.51 UW163_RS07945 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Dyella japonica UNC79MFTsu3.2 0.32 ABZR86_RS13890 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.52 ABZR86_RS09545 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.33 60
Acinetobacter radioresistens SK82 0.32 MPMX26_03021 Ribosomal RNA small subunit methyltransferase B 0.50 MPMX26_00441 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 36
Paraburkholderia sabiae LMG 24235 0.31 QEN71_RS00175 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.47 QEN71_RS26635 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 153
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF1789 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.46 GFF2801 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 90
Burkholderia phytofirmans PsJN 0.31 BPHYT_RS01475 16S rRNA methyltransferase 0.47 BPHYT_RS03405 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 109
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.4741.1 hypothetical protein 0.52 Xcc-8004.2167.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 74
Rhodanobacter denitrificans MT42 0.30 LRK55_RS09765 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.56 LRK55_RS02885 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 63
Paraburkholderia bryophila 376MFSha3.1 0.30 H281DRAFT_02237 16S rRNA (cytosine967-C5)-methyltransferase 0.48 H281DRAFT_04671 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 103
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS10125 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.54 LRK54_RS03135 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 59
Castellaniella sp019104865 MT123 0.30 ABCV34_RS14225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.51 ABCV34_RS15370 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 48
Paraburkholderia graminis OAS925 0.29 ABIE53_000392 16S rRNA (cytosine967-C5)-methyltransferase 0.47 ABIE53_000832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 113
Variovorax sp. SCN45 0.29 GFF5878 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) 0.48 GFF5535 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17) low > 127
Herbaspirillum seropedicae SmR1 0.29 HSERO_RS00355 methyltransferase 0.50 HSERO_RS06170 S-adenosylmethionine tRNA ribosyltransferase low > 78
Acidovorax sp. GW101-3H11 0.28 Ac3H11_4461 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.46 Ac3H11_778 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 79
Cupriavidus basilensis FW507-4G11 0.28 RR42_RS20450 16S rRNA methyltransferase 0.48 RR42_RS17395 S-adenosylmethionine tRNA ribosyltransferase low > 128
Variovorax sp. OAS795 0.28 ABID97_RS05360 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.47 ABID97_RS01590 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 91
Synechococcus elongatus PCC 7942 0.22 Synpcc7942_0962 sun sun protein 0.40 Synpcc7942_2348 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 38
Azospirillum brasilense Sp245 0.20 AZOBR_RS00235 MFS transporter 0.41 AZOBR_RS06300 S-adenosylmethionine tRNA ribosyltransferase low > 97
Azospirillum sp. SherDot2 0.20 MPMX19_02327 Ribosomal RNA small subunit methyltransferase B 0.41 MPMX19_01696 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 112
Caulobacter crescentus NA1000 Δfur 0.20 CCNA_00101 16S rRNA m5C methyltransferase RsmB 0.38 CCNA_01658 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 67
Caulobacter crescentus NA1000 0.20 CCNA_00101 16S rRNA m5C methyltransferase RsmB 0.38 CCNA_01658 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 66
Phaeobacter inhibens DSM 17395 0.19 PGA1_c32880 putative ribosomal RNA small subunit methyltransferase B 0.37 PGA1_c17420 S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA low > 62
Dinoroseobacter shibae DFL-12 0.19 Dshi_3033 Fmu (Sun) domain protein (RefSeq) 0.38 Dshi_1180 Queuosine biosynthesis protein (RefSeq) low > 64
Rhodospirillum rubrum S1H 0.18 Rru_A0243 tRNA/rRNA cytosine-C5-methylase (NCBI) 0.40 Rru_A0281 Queuosine biosynthesis protein (NCBI) low > 58
Agrobacterium fabrum C58 0.18 Atu2825 Sun protein 0.39 Atu1678 S-adenosylmethionine tRNA ribosyltransferase-isomerase low > 89
Fusobacterium nucleatum SB010 0.17 HUW76_07955 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.37 HUW76_03590 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 35
Rhizobium sp. OAE497 0.17 ABIE40_RS19140 RsmB/NOP family class I SAM-dependent RNA methyltransferase 0.39 ABIE40_RS09430 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 107
Rhodopseudomonas palustris CGA009 0.17 TX73_000155 transcription antitermination factor NusB 0.34 TX73_013480 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 86
Brevundimonas sp. GW460-12-10-14-LB2 0.17 A4249_RS13165 RsmB/NOP family class I SAM-dependent RNA methyltransferase 0.39 A4249_RS08775 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 48
Sphingomonas koreensis DSMZ 15582 0.15 Ga0059261_2239 tRNA and rRNA cytosine-C5-methylases 0.38 Ga0059261_1011 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.23 39
Desulfovibrio vulgaris Hildenborough JW710 0.11 DVU3363 sun sun protein (TIGR) 0.39 DVU3351 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (TIGR) low > 55

Not shown: 0 genomes with orthologs for HP15_3742 only; 14 genomes with orthologs for HP15_1478 only