| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Enterobacter asburiae PDN3 | 1.0 | EX28DRAFT_3857 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 1.0 | EX28DRAFT_2989 | | pyridoxal phosphate enzyme, YggS family | 0.49 | 18 |
| Enterobacter sp. TBS_079 | 0.98 | MPMX20_00127 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.89 | MPMX20_03809 | | Pyridoxal phosphate homeostasis protein | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.95 | GFF408 | | 'tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207)' transl_table=11 | 0.84 | GFF3054 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 78 |
| Escherichia coli BW25113 | 0.95 | b3606 | yibK | predicted rRNA methylase (NCBI) | 0.88 | b2951 | yggS | predicted enzyme (NCBI) | low | > 76 |
| Escherichia coli ECOR38 | 0.95 | HEPCGN_14605 | trmL | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL | 0.88 | HEPCGN_18560 | yggS | pyridoxal phosphate homeostasis protein | low | > 87 |
| Escherichia coli Nissle 1917 | 0.95 | ECOLIN_RS20585 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.88 | ECOLIN_RS16415 | | pyridoxal phosphate homeostasis protein | 0.39 | 18 |
| Escherichia fergusonii Becca | 0.94 | EFB2_00204 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.87 | EFB2_00951 | | Pyridoxal phosphate homeostasis protein | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.94 | OHPLBJKB_00093 | | 'tRNA (cytidine(34)-2'-O)-methyltransferase' transl_table=11 | 0.88 | OHPLBJKB_00765 | | Pyridoxal phosphate homeostasis protein | low | > 73 |
| Escherichia coli BL21 | 0.94 | ECD_03464 | | tRNA Leu mC34,mU34 2'-O-methyltransferase, SAM-dependent | 0.88 | ECD_02781 | | UPF0001 family protein, PLP-binding | low | > 61 |
| Escherichia coli ECRC102 | 0.93 | NIAGMN_13525 | trmL | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL | 0.88 | NIAGMN_17020 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Escherichia coli ECRC100 | 0.93 | OKFHMN_15765 | trmL | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL | 0.88 | OKFHMN_19255 | yggS | pyridoxal phosphate homeostasis protein | low | > 80 |
| Escherichia coli ECRC62 | 0.93 | BNILDI_03870 | trmL | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL | 0.88 | BNILDI_09705 | yggS | pyridoxal phosphate homeostasis protein | low | > 75 |
| Escherichia coli ECOR27 | 0.93 | NOLOHH_07645 | trmL | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL | 0.88 | NOLOHH_11125 | yggS | pyridoxal phosphate homeostasis protein | low | > 75 |
| Escherichia coli ECRC98 | 0.93 | JDDGAC_19390 | trmL | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL | 0.88 | JDDGAC_22885 | yggS | pyridoxal phosphate homeostasis protein | low | > 86 |
| Escherichia coli ECRC101 | 0.93 | MCAODC_06275 | trmL | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL | 0.88 | MCAODC_09775 | yggS | pyridoxal phosphate homeostasis protein | low | > 87 |
| Escherichia coli ECRC99 | 0.93 | KEDOAH_12385 | trmL | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL | 0.87 | KEDOAH_08885 | yggS | pyridoxal phosphate homeostasis protein | — | — |
| Klebsiella michiganensis M5al | 0.92 | BWI76_RS27200 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.86 | BWI76_RS24100 | | YggS family pyridoxal phosphate enzyme | low | > 92 |
| Serratia liquefaciens MT49 | 0.87 | IAI46_24670 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.66 | IAI46_21410 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 86 |
| Pantoea sp. MT58 | 0.84 | IAI47_00750 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.71 | IAI47_03595 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 76 |
| Rahnella sp. WP5 | 0.84 | EX31_RS14330 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.65 | EX31_RS02685 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 89 |
| Erwinia tracheiphila SCR3 | 0.84 | LU632_RS21865 | trmL | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.71 | LU632_RS05460 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 74 |
| Alteromonas macleodii MIT1002 | 0.72 | MIT1002_00480 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.52 | MIT1002_03061 | | pyridoxal phosphate enzyme, YggS family | low | > 70 |
| Pseudomonas sp. S08-1 | 0.65 | OH686_14675 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.50 | OH686_10975 | | Pyridoxal phosphate-containing protein YggS | low | > 80 |
| Vibrio cholerae E7946 ATCC 55056 | 0.64 | CSW01_13605 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.59 | CSW01_02455 | | YggS family pyridoxal phosphate enzyme | low | > 62 |
| Rhodanobacter sp. FW510-T8 | 0.64 | OKGIIK_13255 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.24 | OKGIIK_09885 | | Pyridoxal phosphate homeostasis protein | low | > 52 |
| Shewanella oneidensis MR-1 | 0.63 | SO4529 | | RNA methyltransferase, TrmH family, group 2 (NCBI ptt file) | 0.55 | SO3352 | | conserved hypothetical protein TIGR00044 (NCBI ptt file) | low | > 76 |
| Shewanella amazonensis SB2B | 0.63 | Sama_3440 | | RNA methyltransferase TrmH, group 2 (RefSeq) | 0.51 | Sama_2477 | | hypothetical protein (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.63 | Shewana3_3934 | | RNA methyltransferase (RefSeq) | 0.53 | Shewana3_1194 | | hypothetical protein (RefSeq) | low | > 73 |
| Lysobacter sp. OAE881 | 0.63 | ABIE51_RS00285 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.44 | ABIE51_RS16060 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 62 |
| Pseudomonas fluorescens FW300-N2C3 | 0.63 | AO356_09750 | | rRNA methylase | 0.51 | AO356_13425 | | hypothetical protein | low | > 104 |
| Rhodanobacter denitrificans FW104-10B01 | 0.63 | LRK54_RS10645 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.24 | LRK54_RS02905 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 59 |
| Pseudomonas fluorescens FW300-N1B4 | 0.62 | Pf1N1B4_1613 | | tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) | 0.51 | Pf1N1B4_2342 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | — | — |
| Pseudomonas putida KT2440 | 0.62 | PP_5052 | | tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent | 0.47 | PP_5094 | | putative enzyme with PLP binding domain | low | > 96 |
| Pseudomonas stutzeri RCH2 | 0.62 | Psest_3934 | | rRNA methylase, putative, group 2 | 0.47 | Psest_0284 | | pyridoxal phosphate enzyme, YggS family | low | > 67 |
| Kangiella aquimarina DSM 16071 | 0.62 | B158DRAFT_0713 | | rRNA methylase, putative, group 2 | 0.42 | B158DRAFT_0196 | | pyridoxal phosphate enzyme, YggS family | low | > 40 |
| Rhodanobacter denitrificans MT42 | 0.62 | LRK55_RS10285 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.27 | LRK55_RS08955 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 63 |
| Pseudomonas fluorescens FW300-N2E3 | 0.62 | AO353_12135 | | rRNA methylase | 0.48 | AO353_08160 | | hypothetical protein | low | > 101 |
| Paraburkholderia sabiae LMG 24235 | 0.62 | QEN71_RS01475 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.53 | QEN71_RS26595 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.61 | H281DRAFT_01998 | | tRNA (cytidine/uridine-2'-O-)-methyltransferase | 0.53 | H281DRAFT_04680 | | hypothetical protein | low | > 103 |
| Pseudomonas simiae WCS417 | 0.61 | PS417_01625 | | rRNA methylase | 0.49 | PS417_26725 | | hypothetical protein | — | — |
| Burkholderia phytofirmans PsJN | 0.61 | BPHYT_RS02620 | | tRNA methyltransferase | 0.52 | BPHYT_RS03495 | | hypothetical protein | low | > 109 |
| Pseudomonas sp. RS175 | 0.61 | PFR28_04942 | | 'tRNA (cytidine(34)-2'-O)-methyltransferase' transl_table=11 | 0.48 | PFR28_04242 | | Pyridoxal phosphate homeostasis protein | low | > 88 |
| Paraburkholderia graminis OAS925 | 0.61 | ABIE53_000669 | | tRNA (cytidine/uridine-2'-O-)-methyltransferase | 0.53 | ABIE53_000841 | | pyridoxal phosphate enzyme (YggS family) | low | > 113 |
| Pseudomonas fluorescens GW456-L13 | 0.61 | PfGW456L13_349 | | tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) | 0.50 | PfGW456L13_1011 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.61 | Pf6N2E2_3828 | | tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) | 0.49 | Pf6N2E2_4601 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 103 |
| Pseudomonas fluorescens SBW25-INTG | 0.60 | PFLU_RS01675 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.48 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.60 | PFLU_RS01675 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.48 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 109 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.59 | Psyr_4881 | | RNA methyltransferase TrmH, group 2 | 0.48 | Psyr_0477 | | Protein of unknown function UPF0001 | low | > 86 |
| Cupriavidus basilensis FW507-4G11 | 0.59 | RR42_RS01855 | | rRNA methylase | 0.51 | RR42_RS17355 | | hypothetical protein | low | > 128 |
| Pseudomonas syringae pv. syringae B728a | 0.59 | Psyr_4881 | | RNA methyltransferase TrmH, group 2 | 0.48 | Psyr_0477 | | Protein of unknown function UPF0001 | low | > 86 |
| Ralstonia sp. UNC404CL21Col | 0.59 | ABZR87_RS06775 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.45 | ABZR87_RS01225 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 80 |
| Ralstonia solanacearum UW163 | 0.59 | UW163_RS02655 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.44 | UW163_RS08050 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.59 | RALBFv3_RS10925 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.44 | RALBFv3_RS05575 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.59 | ABZR86_RS13445 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.25 | ABZR86_RS09305 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.58 | Xcc-8004.277.1 | | tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) | 0.41 | Xcc-8004.1711.1 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 74 |
| Ralstonia solanacearum GMI1000 | 0.58 | RS_RS01765 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.45 | RS_RS13435 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.58 | RPSI07_RS22385 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.44 | RPSI07_RS11725 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 81 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.57 | GFF684 | | tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) | 0.50 | GFF2722 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | — | — |
| Variovorax sp. SCN45 | 0.57 | GFF2293 | | tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) | 0.48 | GFF3744 | | Pyridoxal phosphate-containing protein YggS | — | — |
| Dickeya dianthicola 67-19 | 0.56 | HGI48_RS20615 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.72 | HGI48_RS17345 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 71 |
| Dickeya dianthicola ME23 | 0.56 | DZA65_RS21630 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.72 | DZA65_RS18435 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 75 |
| Shewanella loihica PV-4 | 0.56 | Shew_3577 | | RNA methyltransferase (RefSeq) | 0.56 | Shew_1137 | | alanine racemase domain-containing protein (RefSeq) | low | > 60 |
| Dechlorosoma suillum PS | 0.56 | Dsui_1278 | | putative rRNA methylase SpoU family | 0.56 | Dsui_0603 | | pyridoxal phosphate enzyme, YggS family | low | > 51 |
| Dickeya dadantii 3937 | 0.56 | DDA3937_RS00755 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.72 | DDA3937_RS17300 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 74 |
| Variovorax sp. OAS795 | 0.56 | ABID97_RS23985 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.50 | ABID97_RS00250 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Acidovorax sp. GW101-3H11 | 0.55 | Ac3H11_3896 | | tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) | 0.47 | Ac3H11_4474 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | low | > 79 |
| Herbaspirillum seropedicae SmR1 | 0.55 | HSERO_RS20815 | | tRNA methyltransferase | 0.53 | HSERO_RS18995 | | hypothetical protein | low | > 78 |
| Pectobacterium carotovorum WPP14 | 0.55 | HER17_RS00645 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.68 | HER17_RS03810 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 75 |
| Castellaniella sp019104865 MT123 | 0.54 | ABCV34_RS14245 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.27 | ABCV34_RS02955 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 48 |
| Mycobacterium tuberculosis H37Rv | 0.48 | Rv3366 | | Probable tRNA/rRNA methylase SpoU (tRNA/rRNA methyltransferase) | 0.21 | Rv2148c | | Conserved protein | low | > 58 |
| Fusobacterium nucleatum SB010 | 0.48 | HUW76_06985 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.28 | HUW76_07280 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 35 |
| Acinetobacter radioresistens SK82 | 0.48 | MPMX26_00707 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.46 | MPMX26_02404 | | Pyridoxal phosphate homeostasis protein | low | > 36 |
| Desulfovibrio vulgaris Miyazaki F | 0.40 | DvMF_0834 | | tRNA/rRNA methyltransferase (SpoU) (RefSeq) | 0.31 | DvMF_2208 | | alanine racemase domain protein (RefSeq) | low | > 51 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.39 | DVU2238 | | RNA methyltransferase, TrmH family (TIGR) | 0.28 | DVU0051 | | conserved hypothetical protein TIGR00044 (TIGR) | low | > 55 |
| Synechococcus elongatus PCC 7942 | 0.38 | Synpcc7942_1874 | | RNA methyltransferase TrmH, group 2 | 0.26 | Synpcc7942_2060 | ylmE | hypothetical protein | low | > 38 |
| Rhodospirillum rubrum S1H | 0.37 | Rru_A0365 | | tRNA/rRNA methyltransferase (SpoU) (NCBI) | 0.29 | Rru_A1141 | | Protein of unknown function UPF0001 (NCBI) | low | > 58 |
| Azospirillum sp. SherDot2 | 0.37 | MPMX19_05011 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.30 | MPMX19_00050 | | Pyridoxal phosphate homeostasis protein | low | > 112 |
| Azospirillum brasilense Sp245 | 0.37 | AZOBR_RS20740 | | tRNA methyltransferase | 0.30 | AZOBR_RS01870 | | alanine racemase | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.36 | A4249_RS02555 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.25 | A4249_RS13760 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 48 |
| Sphingomonas koreensis DSMZ 15582 | 0.35 | Ga0059261_3218 | | Predicted rRNA methylase (SpoU class) | 0.30 | Ga0059261_2216 | | pyridoxal phosphate enzyme, YggS family | low | > 68 |
| Caulobacter crescentus NA1000 Δfur | 0.35 | CCNA_00504 | | 23S rRNA methyltransferase | 0.29 | CCNA_03861 | | pyridoxal 5'-phosphate dependent enzyme class III | low | > 67 |
| Caulobacter crescentus NA1000 | 0.35 | CCNA_00504 | | 23S rRNA methyltransferase | 0.29 | CCNA_03861 | | pyridoxal 5'-phosphate dependent enzyme class III | low | > 66 |
| Rhodopseudomonas palustris CGA009 | 0.34 | TX73_006115 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.28 | TX73_014475 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 86 |
| Agrobacterium fabrum C58 | 0.33 | Atu2244 | | tRNA/rRNA methyltransferase | 0.30 | Atu2747 | | hypothetical protein | low | > 89 |
| Rhizobium sp. OAE497 | 0.33 | ABIE40_RS13160 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.29 | ABIE40_RS19180 | | YggS family pyridoxal phosphate-dependent enzyme | — | — |
| Magnetospirillum magneticum AMB-1 | 0.31 | AMB_RS20670 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.31 | AMB_RS00120 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 64 |
| Sinorhizobium meliloti 1021 | 0.30 | SMc00184 | | tRNA/rRNA methyltransferase | 0.26 | SMc02812 | | hypothetical protein | low | > 103 |
| Bosea sp. OAE506 | 0.27 | ABIE41_RS11180 | | TrmH family RNA methyltransferase | 0.32 | ABIE41_RS04720 | | YggS family pyridoxal phosphate-dependent enzyme | low | > 77 |
Not shown: 0 genomes with orthologs for EX28DRAFT_3857 only; 14 genomes with orthologs for EX28DRAFT_2989 only