| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_04103 | | putative antibiotic peptide MccB17 maturation peptidase | 1.0 | ECD_02927 | | undecaprenyl pyrophosphate phosphatase | low | > 61 |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_10125 | pmbA | metalloprotease PmbA | 1.00 | HEPCGN_17560 | bacA | undecaprenyl-diphosphate phosphatase | low | > 87 |
| Escherichia coli BW25113 | 1.00 | b4235 | pmbA | predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (NCBI) | 1.00 | b3057 | bacA | undecaprenyl pyrophosphate phosphatase (NCBI) | low | > 76 |
| Escherichia coli ECRC101 | 1.00 | MCAODC_02430 | pmbA | metalloprotease PmbA | 1.00 | MCAODC_09220 | bacA | undecaprenyl-diphosphate phosphatase | low | > 87 |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_04185 | pmbA | metalloprotease PmbA | 1.00 | NOLOHH_10495 | bacA | undecaprenyl-diphosphate phosphatase | low | > 75 |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_09775 | pmbA | metalloprotease PmbA | 1.00 | NIAGMN_16470 | bacA | undecaprenyl-diphosphate phosphatase | — | — |
| Escherichia coli ECRC62 | 1.00 | BNILDI_07325 | pmbA | metalloprotease PmbA | 1.00 | BNILDI_01020 | bacA | undecaprenyl-diphosphate phosphatase | low | > 75 |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_15565 | pmbA | metalloprotease PmbA | 1.00 | JDDGAC_22340 | bacA | undecaprenyl-diphosphate phosphatase | low | > 86 |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_16230 | pmbA | metalloprotease PmbA | 1.00 | KEDOAH_09440 | bacA | undecaprenyl-diphosphate phosphatase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_03800 | | Metalloprotease PmbA | 1.00 | OHPLBJKB_00647 | | Undecaprenyl-diphosphatase | low | > 73 |
| Escherichia coli ECRC100 | 1.00 | OKFHMN_11925 | pmbA | metalloprotease PmbA | 1.00 | OKFHMN_18705 | bacA | undecaprenyl-diphosphate phosphatase | 0.86 | 22 |
| Escherichia fergusonii Becca | 0.99 | EFB2_04298 | | Metalloprotease PmbA | 1.00 | EFB2_00754 | | Undecaprenyl-diphosphatase | low | > 86 |
| Escherichia coli Nissle 1917 | 0.99 | ECOLIN_RS24570 | | metalloprotease PmbA | 1.00 | ECOLIN_RS17655 | | undecaprenyl-diphosphate phosphatase | low | > 55 |
| Enterobacter sp. TBS_079 | 0.96 | MPMX20_00517 | | Metalloprotease PmbA | 0.94 | MPMX20_03894 | | Undecaprenyl-diphosphatase | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.96 | GFF904 | | TldE protein, part of TldE/TldD proteolytic complex | 0.94 | GFF3171 | | Undecaprenyl-diphosphatase (EC 3.6.1.27) | low | > 78 |
| Enterobacter asburiae PDN3 | 0.96 | EX28DRAFT_3422 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.94 | EX28DRAFT_3085 | | undecaprenyl-diphosphatase UppP | low | > 76 |
| Klebsiella michiganensis M5al | 0.94 | BWI76_RS02850 | | metalloprotease PmbA | 0.92 | BWI76_RS24480 | | undecaprenyl-diphosphatase | low | > 92 |
| Serratia liquefaciens MT49 | 0.86 | IAI46_22575 | | metalloprotease PmbA | 0.82 | IAI46_22080 | | undecaprenyl-diphosphate phosphatase | low | > 86 |
| Rahnella sp. WP5 | 0.85 | EX31_RS12320 | | metalloprotease PmbA | 0.81 | EX31_RS08165 | | undecaprenyl-diphosphate phosphatase | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.84 | HER17_RS20090 | | metalloprotease PmbA | 0.83 | HER17_RS04015 | | undecaprenyl-diphosphate phosphatase | low | > 75 |
| Pantoea sp. MT58 | 0.84 | IAI47_02765 | | metalloprotease PmbA | 0.85 | IAI47_03080 | | undecaprenyl-diphosphate phosphatase | low | > 76 |
| Dickeya dadantii 3937 | 0.81 | DDA3937_RS01500 | | metalloprotease PmbA | 0.79 | DDA3937_RS17125 | | undecaprenyl-diphosphate phosphatase | low | > 74 |
| Erwinia tracheiphila SCR3 | 0.81 | LU632_RS02145 | pmbA | metalloprotease PmbA | 0.81 | LU632_RS20695 | bacA | undecaprenyl-diphosphate phosphatase | 0.67 | 37 |
| Dickeya dianthicola 67-19 | 0.81 | HGI48_RS01415 | | metalloprotease PmbA | 0.79 | HGI48_RS17175 | | undecaprenyl-diphosphate phosphatase | low | > 71 |
| Dickeya dianthicola ME23 | 0.81 | DZA65_RS01480 | | metalloprotease PmbA | 0.79 | DZA65_RS18260 | | undecaprenyl-diphosphate phosphatase | low | > 75 |
| Vibrio cholerae E7946 ATCC 55056 | 0.64 | CSW01_12845 | | metalloprotease PmbA | 0.24 | CSW01_02795 | | undecaprenyl-diphosphatase | low | > 62 |
| Shewanella sp. ANA-3 | 0.59 | Shewana3_3631 | | microcin-processing peptidase 1 (RefSeq) | 0.26 | Shewana3_3079 | | undecaprenyl pyrophosphate phosphatase (RefSeq) | 0.38 | 42 |
| Shewanella amazonensis SB2B | 0.59 | Sama_0482 | | PmbA protein (RefSeq) | 0.25 | Sama_0831 | | undecaprenyl pyrophosphate phosphatase (RefSeq) | low | > 62 |
| Shewanella oneidensis MR-1 | 0.59 | SO4078 | pmbA | pmba protein (NCBI ptt file) | 0.36 | SO4274 | | undecaprenol kinase, putative (NCBI ptt file) | low | > 76 |
| Shewanella loihica PV-4 | 0.57 | Shew_0416 | | peptidase U62, modulator of DNA gyrase (RefSeq) | 0.28 | Shew_1004 | | undecaprenyl pyrophosphate phosphatase (RefSeq) | low | > 60 |
| Alteromonas macleodii MIT1002 | 0.54 | MIT1002_00230 | | peptidase PmbA | 0.26 | MIT1002_02440 | | Undecaprenyl-diphosphatase | low | > 70 |
| Pseudomonas sp. RS175 | 0.48 | PFR28_00163 | | Metalloprotease PmbA | 0.40 | PFR28_01689 | | Undecaprenyl-diphosphatase | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.48 | PFLU_RS04350 | | metalloprotease PmbA | 0.41 | PFLU_RS13705 | | undecaprenyl-diphosphate phosphatase | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.48 | Pf6N2E2_3278 | | TldE protein, part of TldE/TldD proteolytic complex | 0.40 | Pf6N2E2_773 | | Undecaprenyl-diphosphatase (EC 3.6.1.27) | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.48 | AO356_07085 | | peptidase PmbA | 0.40 | AO356_27775 | | UDP pyrophosphate phosphatase | low | > 104 |
| Pseudomonas fluorescens SBW25-INTG | 0.48 | PFLU_RS04350 | | metalloprotease PmbA | 0.41 | PFLU_RS13705 | | undecaprenyl-diphosphate phosphatase | low | > 109 |
| Pseudomonas simiae WCS417 | 0.47 | PS417_04295 | | peptidase PmbA | 0.41 | PS417_13065 | | UDP pyrophosphate phosphatase | low | > 88 |
| Pseudomonas putida KT2440 | 0.47 | PP_0942 | | regulatory protease | 0.40 | PP_2862 | | Undecaprenyl-diphosphatase | 0.18 | 21 |
| Pseudomonas fluorescens FW300-N1B4 | 0.47 | Pf1N1B4_1090 | | TldE protein, part of TldE/TldD proteolytic complex | 0.41 | Pf1N1B4_4741 | | Undecaprenyl-diphosphatase (EC 3.6.1.27) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.47 | AO353_05205 | | peptidase PmbA | 0.41 | AO353_25760 | | UDP pyrophosphate phosphatase | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.47 | PfGW456L13_5024 | | TldE protein, part of TldE/TldD proteolytic complex | 0.42 | PfGW456L13_3016 | | Undecaprenyl-diphosphatase (EC 3.6.1.27) | low | > 87 |
| Pseudomonas syringae pv. syringae B728a | 0.46 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.40 | Psyr_3008 | | Undecaprenyl-diphosphatase | 0.32 | 55 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.46 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.40 | Psyr_3008 | | Undecaprenyl-diphosphatase | low | > 86 |
| Herbaspirillum seropedicae SmR1 | 0.45 | HSERO_RS09265 | | peptidase C69 | 0.35 | HSERO_RS02455 | | UDP pyrophosphate phosphatase | low | > 78 |
| Pseudomonas stutzeri RCH2 | 0.45 | Psest_3318 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.40 | Psest_2113 | | undecaprenyl-diphosphatase UppP | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.45 | Xcc-8004.1885.1 | | TldE protein, part of TldE/TldD proteolytic complex | 0.23 | Xcc-8004.245.1 | | Undecaprenyl-diphosphatase (EC 3.6.1.27) | — | — |
| Variovorax sp. OAS795 | 0.45 | ABID97_RS20695 | | metalloprotease PmbA | 0.42 | ABID97_RS20835 | | undecaprenyl-diphosphate phosphatase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS21700 | | metalloprotease PmbA | 0.26 | ABZR86_RS15435 | | undecaprenyl-diphosphate phosphatase | — | — |
| Pseudomonas sp. S08-1 | 0.45 | OH686_08570 | | TldE protein, part of TldE/TldD proteolytic complex | 0.41 | OH686_00730 | | undecaprenyl-diphosphatase UppP | — | — |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_10260 | pmbA | metalloprotease PmbA | 0.23 | OKGIIK_14940 | | undecaprenyl-diphosphate phosphatase | low | > 52 |
| Variovorax sp. SCN45 | 0.45 | GFF4697 | | TldE protein, part of TldE/TldD proteolytic complex | 0.41 | GFF6649 | | Undecaprenyl-diphosphatase (EC 3.6.1.27) | low | > 127 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS03375 | | metalloprotease PmbA | 0.26 | LRK54_RS08125 | | undecaprenyl-diphosphate phosphatase | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS03125 | | metalloprotease PmbA | 0.26 | LRK55_RS07875 | | undecaprenyl-diphosphate phosphatase | low | > 63 |
| Dechlorosoma suillum PS | 0.44 | Dsui_1234 | | putative Zn-dependent protease-like protein | 0.34 | Dsui_0449 | | undecaprenyl-diphosphatase UppP | — | — |
| Acidovorax sp. GW101-3H11 | 0.44 | Ac3H11_3262 | | TldE protein, part of TldE/TldD proteolytic complex | 0.38 | Ac3H11_3630 | | Undecaprenyl-diphosphatase (EC 3.6.1.27) | low | > 79 |
| Ralstonia solanacearum IBSBF1503 | 0.43 | RALBFv3_RS13965 | | metalloprotease PmbA | 0.37 | RALBFv3_RS12745 | | undecaprenyl-diphosphate phosphatase | — | — |
| Ralstonia solanacearum UW163 | 0.43 | UW163_RS15845 | | metalloprotease PmbA | 0.37 | UW163_RS00820 | | undecaprenyl-diphosphate phosphatase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.43 | ABZR87_RS09660 | | metalloprotease PmbA | 0.37 | ABZR87_RS08795 | | undecaprenyl-diphosphate phosphatase | low | > 80 |
| Paraburkholderia graminis OAS925 | 0.43 | ABIE53_003116 | | PmbA protein | 0.40 | ABIE53_003261 | | undecaprenyl-diphosphatase | low | > 113 |
| Ralstonia solanacearum PSI07 | 0.43 | RPSI07_RS19505 | | metalloprotease PmbA | 0.37 | RPSI07_RS20515 | | undecaprenyl-diphosphate phosphatase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.43 | H281DRAFT_04304 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.40 | H281DRAFT_04037 | | Undecaprenyl-diphosphatase (EC 3.6.1.27) | — | — |
| Kangiella aquimarina DSM 16071 | 0.43 | B158DRAFT_2075 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.22 | B158DRAFT_0833 | | undecaprenyl-diphosphatase UppP | — | — |
| Burkholderia phytofirmans PsJN | 0.43 | BPHYT_RS14705 | | peptidase C69 | 0.38 | BPHYT_RS15475 | | UDP pyrophosphate phosphatase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.43 | QEN71_RS04270 | | metalloprotease PmbA | 0.39 | QEN71_RS03215 | | undecaprenyl-diphosphate phosphatase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.41 | GFF3655 | | TldE protein, part of TldE/TldD proteolytic complex | 0.26 | GFF813 | | Undecaprenyl-diphosphatase (EC 3.6.1.27) | — | — |
| Lysobacter sp. OAE881 | 0.41 | ABIE51_RS06805 | | metalloprotease PmbA | 0.24 | ABIE51_RS01460 | | undecaprenyl-diphosphate phosphatase | — | — |
| Ralstonia solanacearum GMI1000 | 0.41 | RS_RS04700 | | metalloprotease PmbA | 0.37 | RS_RS03525 | | undecaprenyl-diphosphatase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.41 | RR42_RS14750 | | peptidase PMbA | 0.40 | RR42_RS15630 | | UDP pyrophosphate phosphatase | — | — |
| Azospirillum sp. SherDot2 | 0.34 | MPMX19_01886 | | Metalloprotease PmbA | 0.39 | MPMX19_02659 | | Undecaprenyl-diphosphatase | low | > 112 |
| Sphingomonas koreensis DSMZ 15582 | 0.30 | Ga0059261_0810 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.37 | Ga0059261_1796 | | Undecaprenyl-diphosphatase (EC 3.6.1.27) | — | — |
| Magnetospirillum magneticum AMB-1 | 0.29 | AMB_RS22120 | | TldD/PmbA family protein | 0.36 | AMB_RS07820 | | UDP pyrophosphate phosphatase | — | — |
| Rhodopseudomonas palustris CGA009 | 0.29 | TX73_005930 | | TldD/PmbA family protein | 0.34 | TX73_000225 | | undecaprenyl-diphosphate phosphatase | — | — |
| Rhodospirillum rubrum S1H | 0.29 | Rru_A0575 | | Peptidase U62, modulator of DNA gyrase (NCBI) | 0.36 | Rru_A1803 | | Undecaprenol kinase (NCBI) | low | > 58 |
| Caulobacter crescentus NA1000 | 0.28 | CCNA_00311 | | Zn-dependent protease family protein | 0.33 | CCNA_03719 | | undecaprenyl diphosphatase | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.28 | CCNA_00311 | | Zn-dependent protease family protein | 0.33 | CCNA_03719 | | undecaprenyl diphosphatase | — | — |
| Sinorhizobium meliloti 1021 | 0.28 | SMc00897 | | PMBA protein | 0.33 | SMc00408 | | UDP pyrophosphate phosphatase | — | — |
| Agrobacterium fabrum C58 | 0.27 | Atu0693 | | PmbA/TldD related protein | 0.37 | Atu0294 | | undecaprenyl pyrophosphate phosphatase, possible bacitracin resistance protein | low | > 89 |
| Phaeobacter inhibens DSM 17395 | 0.27 | PGA1_c33480 | | protein PmbA | 0.21 | PGA1_c36070 | | undecaprenyl-diphosphatase UppP | — | — |
| Rhizobium sp. OAE497 | 0.27 | ABIE40_RS03780 | | TldD/PmbA family protein | 0.28 | ABIE40_RS01320 | | undecaprenyl-diphosphate phosphatase | — | — |
| Dinoroseobacter shibae DFL-12 | 0.26 | Dshi_0064 | | peptidase U62 modulator of DNA gyrase (RefSeq) | 0.21 | Dshi_3593 | | Bacitracin resistance protein BacA (RefSeq) | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.20 | BT3649 | | putative modulator of DNA gyrase (NCBI ptt file) | 0.27 | BT3212 | | putative bacitracin resistance protein (NCBI ptt file) | — | — |
| Bacteroides stercoris CC31F | 0.17 | HMPREF1181_RS03170 | | TldD/PmbA family protein | 0.32 | HMPREF1181_RS01715 | | undecaprenyl-diphosphate phosphatase | — | — |
| Parabacteroides merdae CL09T00C40 | 0.16 | HMPREF1078_RS03625 | | TldD/PmbA family protein | 0.26 | HMPREF1078_RS17115 | | undecaprenyl-diphosphate phosphatase | — | — |
| Synechococcus elongatus PCC 7942 | 0.09 | Synpcc7942_1289 | pmbA | putative modulator of DNA gyrase | 0.21 | Synpcc7942_1967 | cacA | undecaprenyl pyrophosphate phosphatase | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.06 | CA265_RS02445 | | peptidase C69 | 0.32 | CA265_RS16150 | | UDP-diphosphatase | low | > 88 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.06 | CA264_16645 | | peptidase C69 | 0.31 | CA264_04645 | | UDP-diphosphatase | — | — |
Not shown: 3 genomes with orthologs for ECD_04103 only; 15 genomes with orthologs for ECD_02927 only