Conservation of cofitness between ECD_03509 and ECD_02724 in Escherichia coli BL21

89 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03509 ATP-dependent DNA helicase 1.0 ECD_02724 ssDNA exonuclease, 5 0.85 4
Escherichia coli BW25113 1.00 b3652 recG ATP-dependent DNA helicase (NCBI) 0.99 b2892 recJ ssDNA exonuclease, 5' --> 3'-specific (NCBI) 0.56 5
Escherichia coli ECRC62 1.00 BNILDI_04090 recG ATP-dependent DNA helicase RecG 1.00 BNILDI_10035 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00049 ATP-dependent DNA helicase RecG 1.00 OHPLBJKB_00823 Single-stranded-DNA-specific exonuclease RecJ low > 73
Escherichia coli Nissle 1917 0.99 ECOLIN_RS20800 ATP-dependent DNA helicase RecG 0.99 ECOLIN_RS16115 single-stranded-DNA-specific exonuclease RecJ 0.85 3
Escherichia fergusonii Becca 0.99 EFB2_00136 ATP-dependent DNA helicase RecG 1.00 EFB2_01009 Single-stranded-DNA-specific exonuclease RecJ 0.47 13
Escherichia coli ECOR27 0.99 NOLOHH_07425 recG ATP-dependent DNA helicase RecG 1.00 NOLOHH_11505 recJ single-stranded-DNA-specific exonuclease RecJ low > 57
Escherichia coli ECRC102 0.99 NIAGMN_13305 recG ATP-dependent DNA helicase RecG 1.00 NIAGMN_17345 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli ECRC98 0.99 JDDGAC_19170 recG ATP-dependent DNA helicase RecG 1.00 JDDGAC_23220 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli ECRC101 0.99 OKFHMN_15545 recG ATP-dependent DNA helicase RecG 1.00 OKFHMN_19580 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli ECOR38 0.99 HEPCGN_14365 recG ATP-dependent DNA helicase RecG 0.99 HEPCGN_18870 recJ single-stranded-DNA-specific exonuclease RecJ low > 85
Escherichia coli ECRC101 0.99 MCAODC_06055 recG ATP-dependent DNA helicase RecG 1.00 MCAODC_10100 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli ECRC99 0.99 KEDOAH_12600 recG ATP-dependent DNA helicase RecG 1.00 KEDOAH_08560 recJ single-stranded-DNA-specific exonuclease RecJ — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.94 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.92 GFF2989 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) low > 78
Enterobacter asburiae PDN3 0.93 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.90 EX28DRAFT_2943 single-stranded-DNA-specific exonuclease RecJ low > 76
Enterobacter sp. TBS_079 0.92 MPMX20_00084 ATP-dependent DNA helicase RecG 0.89 MPMX20_03751 Single-stranded-DNA-specific exonuclease RecJ 0.54 2
Klebsiella michiganensis M5al 0.91 BWI76_RS27440 DNA helicase RecG 0.90 BWI76_RS23805 ssDNA exonuclease RecJ 0.38 22
Serratia liquefaciens MT49 0.84 IAI46_24905 ATP-dependent DNA helicase RecG 0.79 IAI46_20720 single-stranded-DNA-specific exonuclease RecJ 0.71 13
Pantoea sp. MT58 0.84 IAI47_00500 ATP-dependent DNA helicase RecG 0.77 IAI47_03830 single-stranded-DNA-specific exonuclease RecJ low > 76
Pectobacterium carotovorum WPP14 0.82 HER17_RS21395 ATP-dependent DNA helicase RecG 0.72 HER17_RS17880 single-stranded-DNA-specific exonuclease RecJ low > 75
Erwinia tracheiphila SCR3 0.82 LU632_RS22190 recG ATP-dependent DNA helicase RecG 0.73 LU632_RS05985 recJ single-stranded-DNA-specific exonuclease RecJ low > 74
Dickeya dadantii 3937 0.80 DDA3937_RS00170 ATP-dependent DNA helicase RecG 0.76 DDA3937_RS03310 single-stranded-DNA-specific exonuclease RecJ low > 74
Rahnella sp. WP5 0.80 EX31_RS15820 ATP-dependent DNA helicase RecG 0.76 EX31_RS13470 single-stranded-DNA-specific exonuclease RecJ low > 89
Dickeya dianthicola 67-19 0.80 HGI48_RS21190 ATP-dependent DNA helicase RecG 0.77 HGI48_RS03450 single-stranded-DNA-specific exonuclease RecJ low > 71
Dickeya dianthicola ME23 0.80 DZA65_RS22160 ATP-dependent DNA helicase RecG 0.77 DZA65_RS03495 single-stranded-DNA-specific exonuclease RecJ low > 75
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_13680 DNA helicase RecG 0.64 CSW01_12240 single-stranded-DNA-specific exonuclease RecJ low > 62
Shewanella amazonensis SB2B 0.65 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) 0.57 Sama_2737 single-stranded-DNA-specific exonuclease RecJ (RefSeq) low > 62
Shewanella sp. ANA-3 0.65 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) 0.58 Shewana3_3329 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.51 12
Shewanella loihica PV-4 0.64 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) 0.58 Shew_0772 single-stranded-DNA-specific exonuclease RecJ (RefSeq) low > 60
Shewanella oneidensis MR-1 0.64 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) 0.57 SO0952 recJ single-stranded-DNA-specific exonuclease RecJ (NCBI ptt file) 0.43 50
Alteromonas macleodii MIT1002 0.62 MIT1002_00111 ATP-dependent DNA helicase RecG 0.53 MIT1002_00788 Single-stranded-DNA-specific exonuclease RecJ low > 70
Pseudomonas stutzeri RCH2 0.55 Psest_4192 ATP-dependent DNA helicase RecG 0.53 Psest_1544 single-stranded-DNA-specific exonuclease RecJ — —
Pseudomonas putida KT2440 0.55 PP_5310 junction-specific ATP-dependent DNA helicase 0.56 PP_1477 ssDNA-specific exonuclease RecJ low > 96
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.55 PfGW456L13_1730 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) low > 87
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.56 Pf1N1B4_3020 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) low > 87
Pseudomonas simiae WCS417 0.55 PS417_27870 ATP-dependent DNA helicase RecG 0.57 PS417_22855 ssDNA exonuclease RecJ low > 88
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_09320 ATP-dependent DNA helicase RecG 0.55 AO353_04320 single-stranded-DNA-specific exonuclease RecJ 0.30 92
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.56 PFLU_RS24515 single-stranded-DNA-specific exonuclease RecJ low > 109
Pseudomonas fluorescens SBW25 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.56 PFLU_RS24515 single-stranded-DNA-specific exonuclease RecJ low > 109
Marinobacter adhaerens HP15 0.54 HP15_309 DNA helicase, ATP-dependent, RecG 0.50 HP15_766 bacterial RecJ exonuclease 0.69 13
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.56 Pf6N2E2_3137 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) low > 103
Pseudomonas sp. S08-1 0.54 OH686_13505 ATP-dependent DNA helicase RecG 0.56 OH686_06955 single-stranded-DNA-specific exonuclease RecJ low > 80
Pseudomonas sp. RS175 0.54 PFR28_04435 ATP-dependent DNA helicase RecG 0.55 PFR28_00339 Single-stranded-DNA-specific exonuclease RecJ low > 88
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_12380 ATP-dependent DNA helicase RecG 0.56 AO356_06345 single-stranded-DNA-specific exonuclease RecJ low > 104
Pseudomonas syringae pv. syringae B728a ΔmexB 0.54 Psyr_0201 ATP-dependent DNA helicase RecG 0.57 Psyr_1298 exonuclease RecJ low > 86
Pseudomonas syringae pv. syringae B728a 0.54 Psyr_0201 ATP-dependent DNA helicase RecG 0.57 Psyr_1298 exonuclease RecJ low > 86
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS11840 ATP-dependent DNA helicase RecG 0.44 ABZR86_RS02800 single-stranded-DNA-specific exonuclease RecJ low > 74
Acinetobacter radioresistens SK82 0.52 MPMX26_02732 ATP-dependent DNA helicase RecG 0.42 MPMX26_02917 Single-stranded-DNA-specific exonuclease RecJ low > 36
Rhodanobacter denitrificans MT42 0.51 LRK55_RS11530 ATP-dependent DNA helicase RecG 0.17 LRK55_RS18310 DHHA1 domain-containing protein low > 63
Rhodanobacter sp. FW510-T8 0.51 OKGIIK_12090 recG ATP-dependent DNA helicase RecG 0.42 OKGIIK_06995 recJ single-stranded-DNA-specific exonuclease RecJ 0.51 27
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS11805 ATP-dependent DNA helicase RecG 0.41 LRK54_RS00315 single-stranded-DNA-specific exonuclease RecJ low > 59
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.44 Xcc-8004.2909.1 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) low > 74
Kangiella aquimarina DSM 16071 0.48 B158DRAFT_0566 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.49 B158DRAFT_2268 single-stranded-DNA-specific exonuclease RecJ 0.69 11
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS03400 ATP-dependent DNA helicase RecG 0.40 BPHYT_RS12730 single-stranded DNA exonuclease low > 109
Paraburkholderia graminis OAS925 0.45 ABIE53_000833 ATP-dependent DNA helicase RecG 0.40 ABIE53_002771 single-stranded-DNA-specific exonuclease low > 113
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_04672 ATP-dependent DNA helicase RecG 0.40 H281DRAFT_00488 exonuclease RecJ low > 103
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS26630 ATP-dependent DNA helicase RecG 0.41 QEN71_RS05835 single-stranded-DNA-specific exonuclease RecJ — —
Ralstonia solanacearum GMI1000 0.45 RS_RS13565 DNA helicase RecG 0.41 RS_RS05550 single-stranded-DNA-specific exonuclease RecJ — —
Ralstonia solanacearum UW163 0.44 UW163_RS07950 DNA helicase RecG 0.41 UW163_RS12210 single-stranded-DNA-specific exonuclease RecJ — —
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS05675 DNA helicase RecG 0.41 RALBFv3_RS14740 single-stranded-DNA-specific exonuclease RecJ low > 76
Ralstonia solanacearum PSI07 0.44 RPSI07_RS11625 DNA helicase RecG 0.41 RPSI07_RS18620 single-stranded-DNA-specific exonuclease RecJ low > 81
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS17390 ATP-dependent DNA helicase RecG 0.41 RR42_RS06090 single-stranded DNA exonuclease 0.44 22
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS01270 ATP-dependent DNA helicase RecG 0.40 ABZR87_RS10395 single-stranded-DNA-specific exonuclease RecJ 0.62 15
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS06165 ATP-dependent DNA helicase RecG 0.41 HSERO_RS13965 single-stranded DNA exonuclease 0.51 20
Acidovorax sp. GW101-3H11 0.44 Ac3H11_781 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.41 Ac3H11_1746 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) — —
Castellaniella sp019104865 MT123 0.43 ABCV34_RS03570 ATP-dependent DNA helicase RecG 0.38 ABCV34_RS05005 single-stranded-DNA-specific exonuclease RecJ low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF2802 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.37 GFF739 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) — —
Dechlorosoma suillum PS 0.41 Dsui_0311 ATP-dependent DNA helicase RecG 0.44 Dsui_2860 single-stranded-DNA-specific exonuclease RecJ — —
Variovorax sp. OAS795 0.40 ABID97_RS01575 ATP-dependent DNA helicase RecG 0.40 ABID97_RS22940 single-stranded-DNA-specific exonuclease RecJ low > 91
Variovorax sp. SCN45 0.38 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) 0.39 GFF6700 Single-stranded-DNA-specific exonuclease RecJ low > 127
Rhizobium sp. OAE497 0.34 ABIE40_RS09300 ATP-dependent DNA helicase RecG 0.24 ABIE40_RS08655 single-stranded-DNA-specific exonuclease RecJ — —
Agrobacterium fabrum C58 0.34 Atu1780 ATP-dependent DNA helicase 0.24 Atu1586 single-stranded-DNA-specific exonuclease — —
Phocaeicola vulgatus CL09T03C04 0.34 HMPREF1058_RS08295 ATP-dependent DNA helicase RecG 0.24 HMPREF1058_RS14835 single-stranded-DNA-specific exonuclease RecJ 0.51 34
Azospirillum sp. SherDot2 0.34 MPMX19_00951 ATP-dependent DNA helicase RecG 0.23 MPMX19_00667 Single-stranded-DNA-specific exonuclease RecJ — —
Phaeobacter inhibens DSM 17395 0.34 PGA1_c14380 ATP-dependent DNA helicase RecG 0.23 PGA1_c08630 single-stranded-DNA-specific exonuclease RecJ — —
Sinorhizobium meliloti 1021 0.33 SMc00228 ATP-dependent DNA helicase RecG 0.19 SMc00292 single-stranded-DNA-specific exonuclease — —
Phocaeicola dorei CL03T12C01 0.33 ABI39_RS02470 ATP-dependent DNA helicase RecG 0.24 ABI39_RS10550 single-stranded-DNA-specific exonuclease RecJ — —
Magnetospirillum magneticum AMB-1 0.33 AMB_RS12400 ATP-dependent DNA helicase RecG 0.23 AMB_RS18875 single-stranded-DNA-specific exonuclease RecJ — —
Bacteroides thetaiotaomicron VPI-5482 0.33 BT3924 ATP-dependent DNA helicase recG (NCBI ptt file) 0.25 BT3939 single-stranded-DNA-specific exonuclease recJ (NCBI ptt file) — —
Bacteroides stercoris CC31F 0.32 HMPREF1181_RS06615 ATP-dependent DNA helicase RecG 0.24 HMPREF1181_RS06545 single-stranded-DNA-specific exonuclease RecJ low > 56
Dinoroseobacter shibae DFL-12 0.32 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) 0.22 Dshi_2275 single-stranded-DNA-specific exonuclease RecJ (RefSeq) — —
Parabacteroides merdae CL09T00C40 0.32 HMPREF1078_RS12765 ATP-dependent DNA helicase RecG 0.25 HMPREF1078_RS07725 single-stranded-DNA-specific exonuclease RecJ — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.32 Echvi_1162 ATP-dependent DNA helicase RecG 0.24 Echvi_1332 single-stranded-DNA-specific exonuclease RecJ low > 79
Pedobacter sp. GW460-11-11-14-LB5 0.31 CA265_RS22835 ATP-dependent DNA helicase RecG 0.24 CA265_RS25225 single-stranded-DNA-specific exonuclease RecJ — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.31 CA264_15020 DNA helicase RecG 0.23 CA264_17545 single-stranded-DNA-specific exonuclease RecJ 0.43 53
Sphingomonas koreensis DSMZ 15582 0.30 Ga0059261_0958 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.21 Ga0059261_3089 single-stranded-DNA-specific exonuclease RecJ — —
Rhodospirillum rubrum S1H 0.30 Rru_A1728 ATP-dependent DNA helicase RecG (NCBI) 0.24 Rru_A2408 RecJ exonuclease (NCBI) — —
Bosea sp. OAE506 0.30 ABIE41_RS15815 ATP-dependent DNA helicase RecG 0.24 ABIE41_RS19130 single-stranded-DNA-specific exonuclease RecJ low > 77
Rhodopseudomonas palustris CGA009 0.30 TX73_013795 ATP-dependent DNA helicase RecG 0.23 TX73_012960 single-stranded-DNA-specific exonuclease RecJ — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.29 ABZR88_RS17240 ATP-dependent DNA helicase RecG 0.25 ABZR88_RS18635 single-stranded-DNA-specific exonuclease RecJ low > 71

Not shown: 8 genomes with orthologs for ECD_03509 only; 3 genomes with orthologs for ECD_02724 only