| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Dechlorosoma suillum PS | 1.0 | Dsui_1234 | | putative Zn-dependent protease-like protein | 1.0 | Dsui_1622 | | excinuclease ABC, A subunit | 0.91 | 2 |
| Ralstonia solanacearum IBSBF1503 | 0.56 | RALBFv3_RS13965 | | metalloprotease PmbA | 0.78 | RALBFv3_RS11235 | | excinuclease ABC subunit UvrA | low | > 76 |
| Ralstonia solanacearum UW163 | 0.56 | UW163_RS15845 | | metalloprotease PmbA | 0.78 | UW163_RS02345 | | excinuclease ABC subunit UvrA | — | — |
| Paraburkholderia graminis OAS925 | 0.56 | ABIE53_003116 | | PmbA protein | 0.77 | ABIE53_000732 | | excinuclease ABC subunit A | low | > 113 |
| Paraburkholderia sabiae LMG 24235 | 0.56 | QEN71_RS04270 | | metalloprotease PmbA | 0.77 | QEN71_RS01825 | | excinuclease ABC subunit UvrA | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.56 | H281DRAFT_04304 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.77 | H281DRAFT_01913 | | Excinuclease ABC subunit A | low | > 103 |
| Ralstonia sp. UNC404CL21Col | 0.55 | ABZR87_RS09660 | | metalloprotease PmbA | 0.79 | ABZR87_RS07120 | | excinuclease ABC subunit UvrA | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.55 | RPSI07_RS19505 | | metalloprotease PmbA | 0.78 | RPSI07_RS22065 | | excinuclease ABC subunit UvrA | low | > 81 |
| Herbaspirillum seropedicae SmR1 | 0.55 | HSERO_RS09265 | | peptidase C69 | 0.77 | HSERO_RS19810 | | excinuclease ABC subunit A | low | > 78 |
| Burkholderia phytofirmans PsJN | 0.55 | BPHYT_RS14705 | | peptidase C69 | 0.77 | BPHYT_RS02970 | | excinuclease ABC subunit A | low | > 109 |
| Cupriavidus basilensis FW507-4G11 | 0.54 | RR42_RS14750 | | peptidase PMbA | 0.77 | RR42_RS02145 | | excinuclease ABC subunit A | low | > 128 |
| Ralstonia solanacearum GMI1000 | 0.53 | RS_RS04700 | | metalloprotease PmbA | 0.78 | RS_RS02080 | | excinuclease ABC subunit UvrA | low | > 80 |
| Acidovorax sp. GW101-3H11 | 0.51 | Ac3H11_3262 | | TldE protein, part of TldE/TldD proteolytic complex | 0.69 | Ac3H11_4387 | | Excinuclease ABC subunit A | low | > 79 |
| Variovorax sp. OAS795 | 0.50 | ABID97_RS20695 | | metalloprotease PmbA | 0.70 | ABID97_RS04340 | | excinuclease ABC subunit UvrA | low | > 91 |
| Castellaniella sp019104865 MT123 | 0.50 | ABCV34_RS10610 | | metalloprotease PmbA | 0.65 | ABCV34_RS12715 | | excinuclease ABC subunit UvrA | low | > 48 |
| Variovorax sp. SCN45 | 0.50 | GFF4697 | | TldE protein, part of TldE/TldD proteolytic complex | 0.70 | GFF4944 | | Excinuclease ABC subunit A | low | > 127 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.49 | GFF3655 | | TldE protein, part of TldE/TldD proteolytic complex | 0.70 | GFF2755 | | Excinuclease ABC subunit A | low | > 90 |
| Pseudomonas fluorescens FW300-N2E2 | 0.48 | Pf6N2E2_3278 | | TldE protein, part of TldE/TldD proteolytic complex | 0.74 | Pf6N2E2_4888 | | Excinuclease ABC subunit A | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.48 | AO356_07085 | | peptidase PmbA | 0.74 | AO356_14785 | | ABC-ATPase UvrA | low | > 104 |
| Pseudomonas putida KT2440 | 0.48 | PP_0942 | | regulatory protease | 0.75 | PP_0483 | | excinuclease (uvrABC system protein A) | — | — |
| Pseudomonas sp. RS175 | 0.47 | PFR28_00163 | | Metalloprotease PmbA | 0.75 | PFR28_03974 | | UvrABC system protein A | low | > 88 |
| Pseudomonas simiae WCS417 | 0.47 | PS417_04295 | | peptidase PmbA | 0.75 | PS417_25395 | | excinuclease ABC subunit A | low | > 88 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.47 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.75 | Psyr_4520 | | Excinuclease ABC subunit A | low | > 86 |
| Pseudomonas fluorescens SBW25-INTG | 0.47 | PFLU_RS04350 | | metalloprotease PmbA | 0.75 | PFLU_RS27025 | | excinuclease ABC subunit UvrA | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.47 | PFLU_RS04350 | | metalloprotease PmbA | 0.75 | PFLU_RS27025 | | excinuclease ABC subunit UvrA | low | > 109 |
| Pseudomonas syringae pv. syringae B728a | 0.47 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.75 | Psyr_4520 | | Excinuclease ABC subunit A | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.47 | Pf1N1B4_1090 | | TldE protein, part of TldE/TldD proteolytic complex | 0.74 | Pf1N1B4_2611 | | Excinuclease ABC subunit A | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.46 | PfGW456L13_5024 | | TldE protein, part of TldE/TldD proteolytic complex | 0.75 | PfGW456L13_1283 | | Excinuclease ABC subunit A | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.46 | AO353_05205 | | peptidase PmbA | 0.75 | AO353_06855 | | ABC-ATPase UvrA | 0.31 | 55 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS21700 | | metalloprotease PmbA | 0.70 | ABZR86_RS00910 | | excinuclease ABC subunit UvrA | low | > 74 |
| Pseudomonas stutzeri RCH2 | 0.45 | Psest_3318 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.75 | Psest_3576 | | excinuclease ABC, A subunit | low | > 67 |
| Pseudomonas sp. S08-1 | 0.45 | OH686_08570 | | TldE protein, part of TldE/TldD proteolytic complex | 0.75 | OH686_15495 | | excinuclease ABC subunit A | low | > 80 |
| Rhodanobacter sp. FW510-T8 | 0.44 | OKGIIK_10260 | pmbA | metalloprotease PmbA | 0.69 | OKGIIK_03980 | uvrA | excinuclease ABC subunit UvrA | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS03125 | | metalloprotease PmbA | 0.69 | LRK55_RS14925 | | excinuclease ABC subunit UvrA | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS03375 | | metalloprotease PmbA | 0.69 | LRK54_RS15210 | | excinuclease ABC subunit UvrA | low | > 59 |
| Shewanella amazonensis SB2B | 0.44 | Sama_0482 | | PmbA protein (RefSeq) | 0.70 | Sama_0514 | | excinuclease ABC, A subunit (RefSeq) | low | > 62 |
| Vibrio cholerae E7946 ATCC 55056 | 0.43 | CSW01_12845 | | metalloprotease PmbA | 0.71 | CSW01_02080 | | UvrABC system protein A | low | > 62 |
| Serratia liquefaciens MT49 | 0.43 | IAI46_22575 | | metalloprotease PmbA | 0.72 | IAI46_22905 | | excinuclease ABC subunit UvrA | low | > 86 |
| Escherichia coli BL21 | 0.43 | ECD_04103 | | putative antibiotic peptide MccB17 maturation peptidase | 0.72 | ECD_03930 | | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC | low | > 60 |
| Rahnella sp. WP5 | 0.43 | EX31_RS12320 | | metalloprotease PmbA | 0.72 | EX31_RS11990 | | excinuclease ABC subunit UvrA | low | > 89 |
| Escherichia coli ECOR38 | 0.43 | HEPCGN_10125 | pmbA | metalloprotease PmbA | 0.72 | HEPCGN_11510 | uvrA | excinuclease ABC subunit UvrA | 0.77 | 10 |
| Escherichia coli ECRC101 | 0.43 | MCAODC_02430 | pmbA | metalloprotease PmbA | 0.72 | MCAODC_03405 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli ECRC101 | 0.43 | OKFHMN_11925 | pmbA | metalloprotease PmbA | 0.72 | OKFHMN_12895 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli ECRC62 | 0.43 | BNILDI_07325 | pmbA | metalloprotease PmbA | 0.72 | BNILDI_06380 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli ECRC102 | 0.43 | NIAGMN_09775 | pmbA | metalloprotease PmbA | 0.72 | NIAGMN_10740 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.43 | OHPLBJKB_03800 | | Metalloprotease PmbA | 0.72 | OHPLBJKB_03983 | | UvrABC system protein A | low | > 73 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.43 | GFF904 | | TldE protein, part of TldE/TldD proteolytic complex | 0.72 | GFF1429 | | Excinuclease ABC subunit A | low | > 78 |
| Escherichia coli BW25113 | 0.43 | b4235 | pmbA | predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (NCBI) | 0.72 | b4058 | uvrA | excinuclease ABC subunit A (NCBI) | low | > 76 |
| Escherichia coli ECOR27 | 0.43 | NOLOHH_04185 | pmbA | metalloprotease PmbA | 0.72 | NOLOHH_05145 | uvrA | excinuclease ABC subunit UvrA | low | > 57 |
| Escherichia coli ECRC98 | 0.43 | JDDGAC_15565 | pmbA | metalloprotease PmbA | 0.72 | JDDGAC_16530 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Escherichia coli ECRC99 | 0.43 | KEDOAH_16230 | pmbA | metalloprotease PmbA | 0.72 | KEDOAH_15255 | uvrA | excinuclease ABC subunit UvrA | — | — |
| Pectobacterium carotovorum WPP14 | 0.43 | HER17_RS20090 | | metalloprotease PmbA | 0.73 | HER17_RS03550 | | excinuclease ABC subunit UvrA | low | > 75 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.42 | Xcc-8004.1885.1 | | TldE protein, part of TldE/TldD proteolytic complex | 0.71 | Xcc-8004.3830.1 | | Excinuclease ABC subunit A | low | > 74 |
| Escherichia fergusonii Becca | 0.42 | EFB2_04298 | | Metalloprotease PmbA | 0.72 | EFB2_04533 | | UvrABC system protein A | low | > 86 |
| Klebsiella michiganensis M5al | 0.42 | BWI76_RS02850 | | metalloprotease PmbA | 0.71 | BWI76_RS01950 | | excinuclease ABC subunit A | low | > 92 |
| Alteromonas macleodii MIT1002 | 0.42 | MIT1002_00230 | | peptidase PmbA | 0.70 | MIT1002_00179 | | Excinuclease ABC subunit A | low | > 70 |
| Escherichia coli Nissle 1917 | 0.42 | ECOLIN_RS24570 | | metalloprotease PmbA | 0.72 | ECOLIN_RS23485 | | excinuclease ABC subunit UvrA | low | > 52 |
| Enterobacter sp. TBS_079 | 0.42 | MPMX20_00517 | | Metalloprotease PmbA | 0.72 | MPMX20_00276 | | UvrABC system protein A | low | > 85 |
| Enterobacter asburiae PDN3 | 0.42 | EX28DRAFT_3422 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.72 | EX28DRAFT_4246 | | excinuclease ABC, A subunit | low | > 76 |
| Dickeya dadantii 3937 | 0.41 | DDA3937_RS01500 | | metalloprotease PmbA | 0.72 | DDA3937_RS17605 | | excinuclease ABC subunit UvrA | low | > 74 |
| Shewanella oneidensis MR-1 | 0.41 | SO4078 | pmbA | pmba protein (NCBI ptt file) | 0.71 | SO4030 | uvrA | excinuclease ABC, A subunit (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.41 | Shewana3_3631 | | microcin-processing peptidase 1 (RefSeq) | 0.71 | Shewana3_3592 | | excinuclease ABC subunit A (RefSeq) | low | > 73 |
| Dickeya dianthicola 67-19 | 0.41 | HGI48_RS01415 | | metalloprotease PmbA | 0.72 | HGI48_RS17610 | | excinuclease ABC subunit UvrA | low | > 71 |
| Dickeya dianthicola ME23 | 0.41 | DZA65_RS01480 | | metalloprotease PmbA | 0.72 | DZA65_RS18735 | | excinuclease ABC subunit UvrA | low | > 75 |
| Shewanella loihica PV-4 | 0.40 | Shew_0416 | | peptidase U62, modulator of DNA gyrase (RefSeq) | 0.70 | Shew_0533 | | excinuclease ABC, A subunit (RefSeq) | low | > 60 |
| Pantoea sp. MT58 | 0.40 | IAI47_02765 | | metalloprotease PmbA | 0.72 | IAI47_17815 | | excinuclease ABC subunit UvrA | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.39 | LU632_RS02145 | pmbA | metalloprotease PmbA | 0.71 | LU632_RS23685 | uvrA | excinuclease ABC subunit UvrA | low | > 74 |
| Kangiella aquimarina DSM 16071 | 0.38 | B158DRAFT_2075 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.72 | B158DRAFT_0885 | | excinuclease ABC, A subunit | low | > 40 |
| Azospirillum brasilense Sp245 | 0.33 | AZOBR_RS11930 | | modulator protein | 0.61 | AZOBR_RS15370 | | excinuclease ABC subunit A | low | > 97 |
| Azospirillum sp. SherDot2 | 0.31 | MPMX19_01886 | | Metalloprotease PmbA | 0.62 | MPMX19_01152 | | UvrABC system protein A | low | > 112 |
| Magnetospirillum magneticum AMB-1 | 0.31 | AMB_RS22120 | | TldD/PmbA family protein | 0.60 | AMB_RS12410 | | excinuclease ABC subunit UvrA | low | > 64 |
| Rhodopseudomonas palustris CGA009 | 0.29 | TX73_005930 | | TldD/PmbA family protein | 0.59 | TX73_014580 | | excinuclease ABC subunit UvrA | 0.29 | 68 |
| Caulobacter crescentus NA1000 | 0.29 | CCNA_00311 | | Zn-dependent protease family protein | 0.61 | CCNA_02673 | | excinuclease ABC subunit A | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.29 | CCNA_00311 | | Zn-dependent protease family protein | 0.61 | CCNA_02673 | | excinuclease ABC subunit A | low | > 67 |
| Rhodospirillum rubrum S1H | 0.28 | Rru_A0575 | | Peptidase U62, modulator of DNA gyrase (NCBI) | 0.62 | Rru_A1752 | | Excinuclease ABC, A subunit (NCBI) | low | > 58 |
| Phaeobacter inhibens DSM 17395 | 0.28 | PGA1_c33480 | | protein PmbA | 0.59 | PGA1_c17370 | | uvrABC system protein A | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.27 | Ga0059261_0810 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.59 | Ga0059261_0674 | | excinuclease ABC, A subunit | low | > 68 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.27 | A4249_RS09195 | | TldD/PmbA family protein | 0.60 | A4249_RS08575 | | excinuclease ABC subunit UvrA | low | > 48 |
| Sinorhizobium meliloti 1021 | 0.26 | SMc00897 | | PMBA protein | 0.60 | SMc01235 | | excinuclease ABC subunit A | low | > 103 |
| Rhizobium sp. OAE497 | 0.25 | ABIE40_RS03780 | | TldD/PmbA family protein | 0.60 | ABIE40_RS09360 | | excinuclease ABC subunit UvrA | low | > 107 |
| Agrobacterium fabrum C58 | 0.25 | Atu0693 | | PmbA/TldD related protein | 0.61 | Atu1513 | | ABC excinuclease subunit A | low | > 89 |
| Dinoroseobacter shibae DFL-12 | 0.25 | Dshi_0064 | | peptidase U62 modulator of DNA gyrase (RefSeq) | 0.61 | Dshi_1809 | | excinuclease ABC, A subunit (RefSeq) | low | > 64 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.18 | BT3649 | | putative modulator of DNA gyrase (NCBI ptt file) | 0.51 | BT0578 | | excinuclease ABC subunit A (NCBI ptt file) | low | > 81 |
| Bacteroides stercoris CC31F | 0.17 | HMPREF1181_RS03170 | | TldD/PmbA family protein | 0.50 | HMPREF1181_RS15185 | | excinuclease ABC subunit UvrA | low | > 56 |
| Parabacteroides merdae CL09T00C40 | 0.16 | HMPREF1078_RS03625 | | TldD/PmbA family protein | 0.51 | HMPREF1078_RS00835 | | excinuclease ABC subunit UvrA | low | > 61 |
| Synechococcus elongatus PCC 7942 | 0.08 | Synpcc7942_1589 | pmbA | putative modulator of DNA gyrase | 0.54 | Synpcc7942_0848 | uvrA | excinuclease ABC subunit A | low | > 38 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.07 | CA264_16645 | | peptidase C69 | 0.53 | CA264_18100 | | ABC-ATPase UvrA | low | > 74 |
Not shown: 1 genomes with orthologs for Dsui_1234 only; 16 genomes with orthologs for Dsui_1622 only