| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Dechlorosoma suillum PS | 1.0 | Dsui_1234 | | putative Zn-dependent protease-like protein | 1.0 | Dsui_0311 | | ATP-dependent DNA helicase RecG | 0.92 | 1 |
| Ralstonia solanacearum IBSBF1503 | 0.56 | RALBFv3_RS13965 | | metalloprotease PmbA | 0.59 | RALBFv3_RS05675 | | DNA helicase RecG | low | > 76 |
| Ralstonia solanacearum UW163 | 0.56 | UW163_RS15845 | | metalloprotease PmbA | 0.59 | UW163_RS07950 | | DNA helicase RecG | — | — |
| Paraburkholderia graminis OAS925 | 0.56 | ABIE53_003116 | | PmbA protein | 0.56 | ABIE53_000833 | | ATP-dependent DNA helicase RecG | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.56 | H281DRAFT_04304 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.56 | H281DRAFT_04672 | | ATP-dependent DNA helicase RecG | low | > 103 |
| Paraburkholderia sabiae LMG 24235 | 0.56 | QEN71_RS04270 | | metalloprotease PmbA | 0.56 | QEN71_RS26630 | | ATP-dependent DNA helicase RecG | — | — |
| Ralstonia sp. UNC404CL21Col | 0.55 | ABZR87_RS09660 | | metalloprotease PmbA | 0.59 | ABZR87_RS01270 | | ATP-dependent DNA helicase RecG | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.55 | RPSI07_RS19505 | | metalloprotease PmbA | 0.58 | RPSI07_RS11625 | | DNA helicase RecG | low | > 81 |
| Herbaspirillum seropedicae SmR1 | 0.55 | HSERO_RS09265 | | peptidase C69 | 0.56 | HSERO_RS06165 | | ATP-dependent DNA helicase RecG | low | > 78 |
| Burkholderia phytofirmans PsJN | 0.55 | BPHYT_RS14705 | | peptidase C69 | 0.56 | BPHYT_RS03400 | | ATP-dependent DNA helicase RecG | low | > 109 |
| Cupriavidus basilensis FW507-4G11 | 0.54 | RR42_RS14750 | | peptidase PMbA | 0.59 | RR42_RS17390 | | ATP-dependent DNA helicase RecG | low | > 128 |
| Ralstonia solanacearum GMI1000 | 0.53 | RS_RS04700 | | metalloprotease PmbA | 0.58 | RS_RS13565 | | DNA helicase RecG | — | — |
| Acidovorax sp. GW101-3H11 | 0.51 | Ac3H11_3262 | | TldE protein, part of TldE/TldD proteolytic complex | 0.51 | Ac3H11_781 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 79 |
| Castellaniella sp019104865 MT123 | 0.50 | ABCV34_RS10610 | | metalloprotease PmbA | 0.49 | ABCV34_RS03570 | | ATP-dependent DNA helicase RecG | low | > 48 |
| Variovorax sp. OAS795 | 0.50 | ABID97_RS20695 | | metalloprotease PmbA | 0.50 | ABID97_RS01575 | | ATP-dependent DNA helicase RecG | low | > 91 |
| Variovorax sp. SCN45 | 0.50 | GFF4697 | | TldE protein, part of TldE/TldD proteolytic complex | 0.48 | GFF5538 | | ATP-dependent DNA helicase RecG (EC 3.6.4.12) | 0.83 | 33 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.49 | GFF3655 | | TldE protein, part of TldE/TldD proteolytic complex | 0.49 | GFF2802 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 90 |
| Pseudomonas fluorescens FW300-N2E2 | 0.48 | Pf6N2E2_3278 | | TldE protein, part of TldE/TldD proteolytic complex | 0.45 | Pf6N2E2_4352 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.48 | AO356_07085 | | peptidase PmbA | 0.45 | AO356_12380 | | ATP-dependent DNA helicase RecG | low | > 104 |
| Pseudomonas putida KT2440 | 0.48 | PP_0942 | | regulatory protease | 0.46 | PP_5310 | | junction-specific ATP-dependent DNA helicase | low | > 96 |
| Pseudomonas sp. RS175 | 0.47 | PFR28_00163 | | Metalloprotease PmbA | 0.45 | PFR28_04435 | | ATP-dependent DNA helicase RecG | low | > 88 |
| Pseudomonas simiae WCS417 | 0.47 | PS417_04295 | | peptidase PmbA | 0.45 | PS417_27870 | | ATP-dependent DNA helicase RecG | 0.42 | 63 |
| Pseudomonas fluorescens SBW25 | 0.47 | PFLU_RS04350 | | metalloprotease PmbA | 0.45 | PFLU_RS29550 | | ATP-dependent DNA helicase RecG | low | > 109 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.47 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.45 | Psyr_0201 | | ATP-dependent DNA helicase RecG | low | > 86 |
| Pseudomonas fluorescens SBW25-INTG | 0.47 | PFLU_RS04350 | | metalloprotease PmbA | 0.45 | PFLU_RS29550 | | ATP-dependent DNA helicase RecG | low | > 109 |
| Pseudomonas syringae pv. syringae B728a | 0.47 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.45 | Psyr_0201 | | ATP-dependent DNA helicase RecG | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.47 | Pf1N1B4_1090 | | TldE protein, part of TldE/TldD proteolytic complex | 0.46 | Pf1N1B4_2105 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.46 | PfGW456L13_5024 | | TldE protein, part of TldE/TldD proteolytic complex | 0.45 | PfGW456L13_772 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.46 | AO353_05205 | | peptidase PmbA | 0.45 | AO353_09320 | | ATP-dependent DNA helicase RecG | low | > 101 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS21700 | | metalloprotease PmbA | 0.44 | ABZR86_RS11840 | | ATP-dependent DNA helicase RecG | low | > 74 |
| Pseudomonas stutzeri RCH2 | 0.45 | Psest_3318 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.46 | Psest_4192 | | ATP-dependent DNA helicase RecG | — | — |
| Pseudomonas sp. S08-1 | 0.45 | OH686_08570 | | TldE protein, part of TldE/TldD proteolytic complex | 0.45 | OH686_13505 | | ATP-dependent DNA helicase RecG | low | > 80 |
| Rhodanobacter sp. FW510-T8 | 0.44 | OKGIIK_10260 | pmbA | metalloprotease PmbA | 0.43 | OKGIIK_12090 | recG | ATP-dependent DNA helicase RecG | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS03125 | | metalloprotease PmbA | 0.44 | LRK55_RS11530 | | ATP-dependent DNA helicase RecG | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS03375 | | metalloprotease PmbA | 0.44 | LRK54_RS11805 | | ATP-dependent DNA helicase RecG | low | > 59 |
| Shewanella amazonensis SB2B | 0.44 | Sama_0482 | | PmbA protein (RefSeq) | 0.43 | Sama_3375 | | ATP-dependent DNA helicase RecG (RefSeq) | low | > 62 |
| Vibrio cholerae E7946 ATCC 55056 | 0.43 | CSW01_12845 | | metalloprotease PmbA | 0.41 | CSW01_13680 | | DNA helicase RecG | low | > 62 |
| Serratia liquefaciens MT49 | 0.43 | IAI46_22575 | | metalloprotease PmbA | 0.41 | IAI46_24905 | | ATP-dependent DNA helicase RecG | low | > 86 |
| Rahnella sp. WP5 | 0.43 | EX31_RS12320 | | metalloprotease PmbA | 0.43 | EX31_RS15820 | | ATP-dependent DNA helicase RecG | low | > 89 |
| Escherichia coli BL21 | 0.43 | ECD_04103 | | putative antibiotic peptide MccB17 maturation peptidase | 0.42 | ECD_03509 | | ATP-dependent DNA helicase | low | > 60 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.43 | GFF904 | | TldE protein, part of TldE/TldD proteolytic complex | 0.42 | GFF355 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 78 |
| Escherichia coli ECRC102 | 0.43 | NIAGMN_09775 | pmbA | metalloprotease PmbA | 0.43 | NIAGMN_13305 | recG | ATP-dependent DNA helicase RecG | — | — |
| Escherichia coli ECRC62 | 0.43 | BNILDI_07325 | pmbA | metalloprotease PmbA | 0.43 | BNILDI_04090 | recG | ATP-dependent DNA helicase RecG | — | — |
| Escherichia coli ECRC101 | 0.43 | MCAODC_02430 | pmbA | metalloprotease PmbA | 0.43 | MCAODC_06055 | recG | ATP-dependent DNA helicase RecG | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.43 | OHPLBJKB_03800 | | Metalloprotease PmbA | 0.43 | OHPLBJKB_00049 | | ATP-dependent DNA helicase RecG | low | > 73 |
| Escherichia coli BW25113 | 0.43 | b4235 | pmbA | predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (NCBI) | 0.42 | b3652 | recG | ATP-dependent DNA helicase (NCBI) | 0.27 | 20 |
| Escherichia coli ECRC98 | 0.43 | JDDGAC_15565 | pmbA | metalloprotease PmbA | 0.43 | JDDGAC_19170 | recG | ATP-dependent DNA helicase RecG | — | — |
| Escherichia coli ECRC99 | 0.43 | KEDOAH_16230 | pmbA | metalloprotease PmbA | 0.43 | KEDOAH_12600 | recG | ATP-dependent DNA helicase RecG | — | — |
| Escherichia coli ECRC101 | 0.43 | OKFHMN_11925 | pmbA | metalloprotease PmbA | 0.43 | OKFHMN_15545 | recG | ATP-dependent DNA helicase RecG | — | — |
| Escherichia coli ECOR27 | 0.43 | NOLOHH_04185 | pmbA | metalloprotease PmbA | 0.42 | NOLOHH_07425 | recG | ATP-dependent DNA helicase RecG | low | > 57 |
| Escherichia coli ECOR38 | 0.43 | HEPCGN_10125 | pmbA | metalloprotease PmbA | 0.43 | HEPCGN_14365 | recG | ATP-dependent DNA helicase RecG | low | > 85 |
| Pectobacterium carotovorum WPP14 | 0.43 | HER17_RS20090 | | metalloprotease PmbA | 0.41 | HER17_RS21395 | | ATP-dependent DNA helicase RecG | low | > 75 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.42 | Xcc-8004.1885.1 | | TldE protein, part of TldE/TldD proteolytic complex | 0.42 | Xcc-8004.1204.1 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 74 |
| Klebsiella michiganensis M5al | 0.42 | BWI76_RS02850 | | metalloprotease PmbA | 0.41 | BWI76_RS27440 | | DNA helicase RecG | low | > 92 |
| Escherichia fergusonii Becca | 0.42 | EFB2_04298 | | Metalloprotease PmbA | 0.43 | EFB2_00136 | | ATP-dependent DNA helicase RecG | low | > 86 |
| Alteromonas macleodii MIT1002 | 0.42 | MIT1002_00230 | | peptidase PmbA | 0.43 | MIT1002_00111 | | ATP-dependent DNA helicase RecG | low | > 70 |
| Escherichia coli Nissle 1917 | 0.42 | ECOLIN_RS24570 | | metalloprotease PmbA | 0.43 | ECOLIN_RS20800 | | ATP-dependent DNA helicase RecG | low | > 52 |
| Enterobacter sp. TBS_079 | 0.42 | MPMX20_00517 | | Metalloprotease PmbA | 0.42 | MPMX20_00084 | | ATP-dependent DNA helicase RecG | low | > 85 |
| Enterobacter asburiae PDN3 | 0.42 | EX28DRAFT_3422 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.41 | EX28DRAFT_3901 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 76 |
| Lysobacter sp. OAE881 | 0.41 | ABIE51_RS06805 | | metalloprotease PmbA | 0.45 | ABIE51_RS17230 | | ATP-dependent DNA helicase RecG | low | > 62 |
| Dickeya dadantii 3937 | 0.41 | DDA3937_RS01500 | | metalloprotease PmbA | 0.42 | DDA3937_RS00170 | | ATP-dependent DNA helicase RecG | low | > 74 |
| Shewanella oneidensis MR-1 | 0.41 | SO4078 | pmbA | pmba protein (NCBI ptt file) | 0.43 | SO4364 | recG | ATP-dependent DNA helicase RecG (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.41 | Shewana3_3631 | | microcin-processing peptidase 1 (RefSeq) | 0.44 | Shewana3_0348 | | ATP-dependent DNA helicase RecG (RefSeq) | low | > 73 |
| Dickeya dianthicola ME23 | 0.41 | DZA65_RS01480 | | metalloprotease PmbA | 0.42 | DZA65_RS22160 | | ATP-dependent DNA helicase RecG | low | > 75 |
| Dickeya dianthicola 67-19 | 0.41 | HGI48_RS01415 | | metalloprotease PmbA | 0.42 | HGI48_RS21190 | | ATP-dependent DNA helicase RecG | 0.72 | 13 |
| Pantoea sp. MT58 | 0.40 | IAI47_02765 | | metalloprotease PmbA | 0.43 | IAI47_00500 | | ATP-dependent DNA helicase RecG | low | > 76 |
| Shewanella loihica PV-4 | 0.40 | Shew_0416 | | peptidase U62, modulator of DNA gyrase (RefSeq) | 0.44 | Shew_3507 | | ATP-dependent DNA helicase RecG (RefSeq) | low | > 60 |
| Erwinia tracheiphila SCR3 | 0.39 | LU632_RS02145 | pmbA | metalloprotease PmbA | 0.42 | LU632_RS22190 | recG | ATP-dependent DNA helicase RecG | low | > 74 |
| Kangiella aquimarina DSM 16071 | 0.38 | B158DRAFT_2075 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.43 | B158DRAFT_0566 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 40 |
| Azospirillum brasilense Sp245 | 0.33 | AZOBR_RS11930 | | modulator protein | 0.33 | AZOBR_RS09850 | | ATP-dependent DNA helicase RecG | low | > 97 |
| Azospirillum sp. SherDot2 | 0.31 | MPMX19_01886 | | Metalloprotease PmbA | 0.33 | MPMX19_00951 | | ATP-dependent DNA helicase RecG | — | — |
| Magnetospirillum magneticum AMB-1 | 0.31 | AMB_RS22120 | | TldD/PmbA family protein | 0.33 | AMB_RS12400 | | ATP-dependent DNA helicase RecG | — | — |
| Rhodopseudomonas palustris CGA009 | 0.29 | TX73_005930 | | TldD/PmbA family protein | 0.30 | TX73_013795 | | ATP-dependent DNA helicase RecG | low | > 86 |
| Caulobacter crescentus NA1000 | 0.29 | CCNA_00311 | | Zn-dependent protease family protein | 0.34 | CCNA_01504 | | ATP-dependent DNA helicase recG | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.29 | CCNA_00311 | | Zn-dependent protease family protein | 0.34 | CCNA_01504 | | ATP-dependent DNA helicase recG | low | > 67 |
| Rhodospirillum rubrum S1H | 0.28 | Rru_A0575 | | Peptidase U62, modulator of DNA gyrase (NCBI) | 0.30 | Rru_A1728 | | ATP-dependent DNA helicase RecG (NCBI) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.28 | PGA1_c33480 | | protein PmbA | 0.32 | PGA1_c14380 | | ATP-dependent DNA helicase RecG | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.27 | A4249_RS09195 | | TldD/PmbA family protein | 0.31 | A4249_RS04765 | | ATP-dependent DNA helicase RecG | low | > 48 |
| Sinorhizobium meliloti 1021 | 0.26 | SMc00897 | | PMBA protein | 0.33 | SMc00228 | | ATP-dependent DNA helicase RecG | low | > 103 |
| Rhizobium sp. OAE497 | 0.25 | ABIE40_RS03780 | | TldD/PmbA family protein | 0.34 | ABIE40_RS09300 | | ATP-dependent DNA helicase RecG | low | > 107 |
| Agrobacterium fabrum C58 | 0.25 | Atu0693 | | PmbA/TldD related protein | 0.34 | Atu1780 | | ATP-dependent DNA helicase | low | > 89 |
| Dinoroseobacter shibae DFL-12 | 0.25 | Dshi_0064 | | peptidase U62 modulator of DNA gyrase (RefSeq) | 0.32 | Dshi_1510 | | DEAD/DEAH box helicase domain protein (RefSeq) | low | > 64 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.18 | BT3649 | | putative modulator of DNA gyrase (NCBI ptt file) | 0.32 | BT3924 | | ATP-dependent DNA helicase recG (NCBI ptt file) | — | — |
| Bacteroides stercoris CC31F | 0.17 | HMPREF1181_RS03170 | | TldD/PmbA family protein | 0.32 | HMPREF1181_RS06615 | | ATP-dependent DNA helicase RecG | low | > 56 |
| Parabacteroides merdae CL09T00C40 | 0.16 | HMPREF1078_RS03625 | | TldD/PmbA family protein | 0.33 | HMPREF1078_RS12765 | | ATP-dependent DNA helicase RecG | — | — |
| Synechococcus elongatus PCC 7942 | 0.08 | Synpcc7942_1589 | pmbA | putative modulator of DNA gyrase | 0.33 | Synpcc7942_1079 | recG | ATP-dependent DNA helicase RecG | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.07 | CA264_16645 | | peptidase C69 | 0.32 | CA264_15020 | | DNA helicase RecG | low | > 74 |
Not shown: 1 genomes with orthologs for Dsui_1234 only; 10 genomes with orthologs for Dsui_0311 only