Conservation of cofitness between CSW01_01045 and CSW01_15330 in Vibrio cholerae E7946 ATCC 55056

97 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01045 DNA helicase RecQ 1.0 CSW01_15330 glycine dehydrogenase (decarboxylating) 0.66 9
Klebsiella pneumoniae MKP103 0.67 KDGMDA_09735 ATP-dependent DNA helicase RecQ 0.59 KDGMDA_04370 aminomethyl-transferring glycine dehydrogenase low > 95
Escherichia coli ECRC98 0.67 JDDGAC_17985 recQ ATP-dependent DNA helicase RecQ 0.59 JDDGAC_23170 gcvP aminomethyl-transferring glycine dehydrogenase low > 87
Escherichia coli ECRC102 0.67 NIAGMN_12115 recQ ATP-dependent DNA helicase RecQ 0.59 NIAGMN_17295 gcvP aminomethyl-transferring glycine dehydrogenase low > 80
Escherichia coli ECOR38 0.67 HEPCGN_13060 recQ ATP-dependent DNA helicase RecQ 0.59 HEPCGN_18820 gcvP aminomethyl-transferring glycine dehydrogenase low > 88
Escherichia coli ECRC99 0.67 KEDOAH_13790 recQ ATP-dependent DNA helicase RecQ 0.59 KEDOAH_08610 gcvP aminomethyl-transferring glycine dehydrogenase — —
Escherichia coli ECOR27 0.67 NOLOHH_06490 recQ ATP-dependent DNA helicase RecQ 0.59 NOLOHH_11445 gcvP aminomethyl-transferring glycine dehydrogenase low > 76
Escherichia coli ECRC100 0.67 OKFHMN_14360 recQ ATP-dependent DNA helicase RecQ 0.59 OKFHMN_19530 gcvP aminomethyl-transferring glycine dehydrogenase low > 79
Escherichia coli ECRC62 0.67 BNILDI_05040 recQ ATP-dependent DNA helicase RecQ 0.59 BNILDI_09980 gcvP aminomethyl-transferring glycine dehydrogenase low > 75
Escherichia coli ECRC101 0.67 MCAODC_04865 recQ ATP-dependent DNA helicase RecQ 0.59 MCAODC_10050 gcvP aminomethyl-transferring glycine dehydrogenase low > 87
Escherichia coli Nissle 1917 0.67 ECOLIN_RS21935 ATP-dependent DNA helicase RecQ 0.59 ECOLIN_RS16165 aminomethyl-transferring glycine dehydrogenase low > 55
Escherichia fergusonii Becca 0.67 EFB2_04815 ATP-dependent DNA helicase RecQ 0.59 EFB2_00999 Glycine dehydrogenase (decarboxylating) low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_04229 ATP-dependent DNA helicase RecQ 0.59 OHPLBJKB_00812 Glycine dehydrogenase (decarboxylating) 0.67 1
Escherichia coli BW25113 0.67 b3822 recQ ATP-dependent DNA helicase (NCBI) 0.59 b2903 gcvP glycine dehydrogenase (NCBI) low > 76
Pantoea sp. MT58 0.67 IAI47_18360 ATP-dependent DNA helicase RecQ 0.59 IAI47_03775 aminomethyl-transferring glycine dehydrogenase low > 76
Escherichia coli BL21 0.66 ECD_03701 ATP-dependent DNA helicase 0.59 ECD_02735 glycine decarboxylase, PLP-dependent, subunit P of glycine cleavage complex low > 61
Klebsiella michiganensis M5al 0.66 BWI76_RS01245 DNA helicase RecQ 0.59 BWI76_RS23870 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) low > 92
Dickeya dianthicola 67-19 0.66 HGI48_RS20005 ATP-dependent DNA helicase RecQ 0.58 HGI48_RS03400 aminomethyl-transferring glycine dehydrogenase low > 71
Erwinia tracheiphila SCR3 0.66 LU632_RS24095 recQ ATP-dependent DNA helicase RecQ 0.58 LU632_RS05915 gcvP aminomethyl-transferring glycine dehydrogenase low > 73
Serratia liquefaciens MT49 0.66 IAI46_00770 ATP-dependent DNA helicase RecQ 0.58 IAI46_20850 aminomethyl-transferring glycine dehydrogenase low > 87
Pantoea agglomerans CFBP13505 P0401 0.66 PagCFBP13505_RS15340 ATP-dependent DNA helicase RecQ 0.59 PagCFBP13505_RS15925 aminomethyl-transferring glycine dehydrogenase 0.63 57
Erwinia amylovora T8 0.66 OLJFJH_06445 ATP-dependent DNA helicase RecQ 0.59 OLJFJH_08785 aminomethyl-transferring glycine dehydrogenase low > 58
Dickeya dianthicola ME23 0.66 DZA65_RS21045 ATP-dependent DNA helicase RecQ 0.58 DZA65_RS03445 aminomethyl-transferring glycine dehydrogenase low > 75
Dickeya dadantii 3937 0.66 DDA3937_RS19850 ATP-dependent DNA helicase RecQ 0.58 DDA3937_RS03255 aminomethyl-transferring glycine dehydrogenase low > 74
Erwinia tracheiphila HP pepo 2.2 0.66 IJEDHG_08740 recQ ATP-dependent DNA helicase RecQ 0.58 IJEDHG_03250 gcvP aminomethyl-transferring glycine dehydrogenase low > 61
Enterobacter asburiae PDN3 0.66 EX28DRAFT_4487 ATP-dependent DNA helicase RecQ 0.59 EX28DRAFT_2955 glycine dehydrogenase (decarboxylating) low > 76
Enterobacter sp. TBS_079 0.66 MPMX20_04458 ATP-dependent DNA helicase RecQ 0.59 MPMX20_03762 Glycine dehydrogenase (decarboxylating) low > 85
Rahnella sp. WP5 0.65 EX31_RS15210 ATP-dependent DNA helicase RecQ 0.58 EX31_RS21520 aminomethyl-transferring glycine dehydrogenase low > 89
Pectobacterium carotovorum WPP14 0.65 HER17_RS01395 ATP-dependent DNA helicase RecQ 0.58 HER17_RS17995 aminomethyl-transferring glycine dehydrogenase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF248 ATP-dependent DNA helicase RecQ 0.59 GFF3003 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 78
Shewanella sp. ANA-3 0.59 Shewana3_3763 ATP-dependent DNA helicase RecQ (RefSeq) 0.58 Shewana3_3499 glycine dehydrogenase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.58 SO4241 recQ ATP-dependent DNA helicase RecQ (NCBI ptt file) 0.58 SO0781 gcvP glycine cleavage system P protein (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.58 Shew_3474 ATP-dependent DNA helicase RecQ (RefSeq) 0.59 Shew_3062 glycine dehydrogenase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.57 Sama_0333 ATP-dependent DNA helicase RecQ (RefSeq) 0.58 Sama_2719 glycine dehydrogenase (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.54 MIT1002_00148 ATP-dependent DNA helicase RecQ 0.63 MIT1002_02971 Glycine dehydrogenase [decarboxylating] low > 70
Pseudomonas sp. SVBP6 0.46 COO64_RS21845 recQ DNA helicase RecQ 0.58 COO64_RS00950 gcvP aminomethyl-transferring glycine dehydrogenase low > 93
Pseudomonas aeruginosa PA14 0.45 IKLFDK_17145 DNA helicase RecQ 0.57 IKLFDK_27405 aminomethyl-transferring glycine dehydrogenase low > 98
Pseudomonas aeruginosa PUPa3 0.45 DQ20_RS40870 recQ;go_function=DNA DNA helicase RecQ 0.57 DQ20_RS50180 gcvP;go_function=glycine aminomethyl-transferring glycine dehydrogenase low > 101
Pseudomonas aeruginosa MRSN321 0.45 DY961_RS00140 recQ;go_function=DNA DNA helicase RecQ 0.57 DY961_RS11935 gcvP;go_function=glycine aminomethyl-transferring glycine dehydrogenase low > 100
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_4423 ATP-dependent DNA helicase RecQ 0.58 PfGW456L13_904 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 87
Pseudomonas sp. RS175 0.45 PFR28_00788 ATP-dependent DNA helicase RecQ 0.56 PFR28_03383 Glycine dehydrogenase (decarboxylating) low > 88
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_04050 ATP-dependent DNA helicase RecQ 0.56 AO356_18170 glycine dehydrogenase low > 104
Dyella japonica UNC79MFTsu3.2 0.45 ABZR86_RS19925 DNA helicase RecQ 0.57 ABZR86_RS08305 aminomethyl-transferring glycine dehydrogenase low > 74
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS13000 DNA helicase RecQ 0.56 LRK54_RS00520 aminomethyl-transferring glycine dehydrogenase low > 59
Pseudomonas segetis P6 0.45 MPMX49_02936 ATP-dependent DNA helicase RecQ 0.59 MPMX49_04479 Glycine dehydrogenase (decarboxylating) low > 75
Pseudomonas sp. S08-1 0.45 OH686_20670 ATP-dependent DNA helicase RecQ 0.60 OH686_11165 glycine dehydrogenase low > 80
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_2645 ATP-dependent DNA helicase RecQ 0.56 Pf6N2E2_5558 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) low > 103
Rhodanobacter denitrificans MT42 0.45 LRK55_RS12700 DNA helicase RecQ 0.56 LRK55_RS00260 aminomethyl-transferring glycine dehydrogenase low > 63
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_3533 ATP-dependent DNA helicase RecQ 0.59 Pf1N1B4_2236 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 87
Pontibacter actiniarum KMM 6156, DSM 19842 0.45 CA264_07560 DNA helicase RecQ 0.55 CA264_18410 glycine dehydrogenase (aminomethyl-transferring) low > 74
Pseudomonas sp. DMC3 0.44 GFF2380 ATP-dependent DNA helicase RecQ 0.58 GFF308 Glycine dehydrogenase (decarboxylating) low > 89
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.56 Psyr_1096 glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.56 Psyr_1096 glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit low > 86
Pseudomonas sp. BP01 0.44 JOY50_RS01155 recQ DNA helicase RecQ 0.59 JOY50_RS22405 gcvP aminomethyl-transferring glycine dehydrogenase low > 84
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_18430 ATP-dependent DNA helicase RecQ 0.58 AO353_08720 glycine dehydrogenase low > 101
Pseudomonas putida KT2440 0.44 PP_4516 ATP-dependent DNA 3 0.58 PP_5192 glycine dehydrogenase low > 96
Pseudomonas orientalis W4I3 0.44 QF045_RS22070 DNA helicase RecQ 0.57 QF045_RS24485 aminomethyl-transferring glycine dehydrogenase low > 93
Pseudomonas simiae WCS417 0.44 PS417_19950 ATP-dependent DNA helicase RecQ 0.57 PS417_22360 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) low > 88
Pseudomonas fluorescens SBW25 0.44 PFLU_RS21920 DNA helicase RecQ 0.57 PFLU_RS24000 aminomethyl-transferring glycine dehydrogenase low > 109
Pseudomonas lactucae CFBP13502 0.44 GEMAOFIL_04187 ATP-dependent DNA helicase RecQ 0.57 GEMAOFIL_04608 Glycine dehydrogenase (decarboxylating) low > 96
Rhodanobacter sp000427505 FW510-R12 0.44 LRK53_RS15600 DNA helicase RecQ 0.54 LRK53_RS09610 aminomethyl-transferring glycine dehydrogenase low > 59
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS21920 DNA helicase RecQ 0.57 PFLU_RS24000 aminomethyl-transferring glycine dehydrogenase low > 109
Variovorax sp. OAS795 0.44 ABID97_RS03395 DNA helicase RecQ 0.56 ABID97_RS19655 aminomethyl-transferring glycine dehydrogenase low > 91
Pseudomonas stutzeri RCH2 0.44 Psest_1869 ATP-dependent DNA helicase RecQ 0.60 Psest_0183 glycine dehydrogenase (decarboxylating) low > 67
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_02375 recQ DNA helicase RecQ 0.55 OKGIIK_06740 gcvP2 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain 0.31 23
Rhizobium sp. OAE497 0.44 ABIE40_RS12745 DNA helicase RecQ 0.54 ABIE40_RS09950 aminomethyl-transferring glycine dehydrogenase low > 107
Agrobacterium fabrum C58 0.44 Atu0061 ATP-dependent DNA helicase 0.54 Atu1462 glycine cleavage system protein P2 low > 89
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.1476.1 ATP-dependent DNA helicase RecQ 0.55 Xcc-8004.3878.1 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 74
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS28295 DNA helicase RecQ 0.57 QEN71_RS29215 aminomethyl-transferring glycine dehydrogenase low > 153
Paraburkholderia graminis OAS925 0.43 ABIE53_003792 ATP-dependent DNA helicase RecQ 0.58 ABIE53_000238 glycine dehydrogenase low > 113
Dinoroseobacter shibae DFL-12 0.43 Dshi_3334 ATP-dependent DNA helicase RecQ (RefSeq) 0.55 Dshi_2680 glycine dehydrogenase (RefSeq) low > 64
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS18145 ATP-dependent DNA helicase RecQ 0.58 BPHYT_RS19330 glycine cleavage system P protein (EC 1.4.4.2) (from data) low > 109
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS02880 DNA helicase RecQ 0.56 ABZR87_RS03935 aminomethyl-transferring glycine dehydrogenase low > 80
Phaeobacter inhibens DSM 17395 0.42 PGA1_c31900 ATP-dependent DNA helicase RecQ 0.56 PGA1_78p00310 glycine dehydrogenase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.42 ABZR88_RS20865 DNA helicase RecQ 0.55 ABZR88_RS01785 aminomethyl-transferring glycine dehydrogenase low > 71
Echinicola vietnamensis KMM 6221, DSM 17526 0.42 Echvi_0784 ATP-dependent DNA helicase RecQ 0.55 Echvi_0744 glycine dehydrogenase (decarboxylating) low > 79
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS19310 ATP-dependent DNA helicase RecQ 0.56 RR42_RS20070 glycine dehydrogenase low > 128
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_06595 ATP-dependent DNA helicase RecQ 0.58 H281DRAFT_02409 glycine dehydrogenase — —
Ralstonia solanacearum GMI1000 0.42 RS_RS15155 DNA helicase RecQ 0.56 RS_RS16510 glycine dehydrogenase low > 80
Ralstonia solanacearum PSI07 0.42 RPSI07_RS10025 DNA helicase RecQ 0.57 RPSI07_RS08575 glycine dehydrogenase (aminomethyl-transferring) low > 81
Ralstonia solanacearum UW163 0.42 UW163_RS06400 DNA helicase RecQ 0.57 UW163_RS04950 glycine dehydrogenase (aminomethyl-transferring) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF1958 ATP-dependent DNA helicase RecQ 0.54 GFF5215 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 90
Dechlorosoma suillum PS 0.42 Dsui_3092 ATP-dependent DNA helicase RecQ 0.60 Dsui_2737 glycine dehydrogenase, decarboxylating low > 51
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS07220 DNA helicase RecQ 0.57 RALBFv3_RS08660 glycine dehydrogenase (aminomethyl-transferring) low > 76
Lysobacter sp. OAE881 0.42 ABIE51_RS05145 DNA helicase RecQ 0.55 ABIE51_RS14345 aminomethyl-transferring glycine dehydrogenase low > 62
Sinorhizobium meliloti 1021 0.42 SMc01566 ATP-dependent DNA helicase 0.55 SMc02049 glycine dehydrogenase low > 103
Variovorax sp. SCN45 0.42 GFF6415 ATP-dependent DNA helicase RecQ 0.56 GFF6478 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 127
Acidovorax sp. GW101-3H11 0.41 Ac3H11_3308 ATP-dependent DNA helicase RecQ 0.54 Ac3H11_167 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) low > 79
Rhodopseudomonas palustris CGA009 0.41 TX73_025080 DNA helicase RecQ 0.57 TX73_019935 aminomethyl-transferring glycine dehydrogenase low > 86
Phocaeicola vulgatus CL09T03C04 0.41 HMPREF1058_RS14585 DNA helicase RecQ 0.47 HMPREF1058_RS18780 aminomethyl-transferring glycine dehydrogenase 0.46 38
Phocaeicola dorei CL03T12C01 0.41 ABI39_RS10235 DNA helicase RecQ 0.47 ABI39_RS15100 aminomethyl-transferring glycine dehydrogenase low > 72
Parabacteroides merdae CL09T00C40 0.40 HMPREF1078_RS01195 DNA helicase RecQ 0.46 HMPREF1078_RS15115 aminomethyl-transferring glycine dehydrogenase low > 61
Castellaniella sp019104865 MT123 0.40 ABCV34_RS07985 DNA helicase RecQ 0.54 ABCV34_RS08835 aminomethyl-transferring glycine dehydrogenase low > 48
Bacteroides stercoris CC31F 0.40 HMPREF1181_RS14110 DNA helicase RecQ 0.47 HMPREF1181_RS16815 aminomethyl-transferring glycine dehydrogenase low > 56
Cellulophaga baltica 18 0.39 M666_RS16920 DNA helicase RecQ 0.50 M666_RS01560 aminomethyl-transferring glycine dehydrogenase low > 67
Bacteroides thetaiotaomicron VPI-5482 0.39 BT1848 ATP-dependent DNA helicase recQ (NCBI ptt file) 0.48 BT1147 glycine dehydrogenase [decarboxylating] (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.38 BACOVA_04594 ATP-dependent DNA helicase RecQ 0.49 BACOVA_04038 glycine dehydrogenase low > 96
Pedobacter sp. GW460-11-11-14-LB5 0.36 CA265_RS08905 DNA helicase RecQ 0.55 CA265_RS25185 glycine dehydrogenase (aminomethyl-transferring) low > 88

Not shown: 16 genomes with orthologs for CSW01_01045 only; 4 genomes with orthologs for CSW01_15330 only