Conservation of cofitness between CSW01_05090 and CSW01_13445 in Vibrio cholerae E7946 ATCC 55056

90 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA 1.0 CSW01_13445 elongation factor P 0.43 11
Klebsiella michiganensis M5al 0.76 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA 0.79 BWI76_RS02415 elongation factor P — —
Escherichia coli ECRC99 0.75 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase 0.78 KEDOAH_15775 Elongation factor P — —
Escherichia coli ECRC102 0.75 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase 0.78 NIAGMN_10235 Elongation factor P — —
Escherichia coli Nissle 1917 0.75 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA 0.78 ECOLIN_RS24085 elongation factor P — —
Escherichia coli ECRC62 0.75 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA 0.78 BNILDI_06840 Elongation factor P — —
Escherichia coli ECRC101 0.75 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase 0.78 MCAODC_02900 Elongation factor P — —
Escherichia coli ECRC98 0.75 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase 0.78 JDDGAC_16025 Elongation factor P — —
Escherichia coli ECOR38 0.75 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase 0.78 HEPCGN_10615 Elongation factor P — —
Escherichia coli ECRC100 0.75 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase 0.78 OKFHMN_12390 Elongation factor P — —
Escherichia fergusonii Becca 0.74 EFB2_01540 tRNA pseudouridine synthase A 0.78 EFB2_04388 Elongation factor P — —
Enterobacter asburiae PDN3 0.74 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase 0.78 EX28DRAFT_3343 translation elongation factor P — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.74 OHPLBJKB_01387 tRNA pseudouridine synthase A 0.78 OHPLBJKB_03895 Elongation factor P — —
Escherichia coli ECOR27 0.74 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA 0.78 NOLOHH_04650 Elongation factor P — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.78 GFF2005 Translation elongation factor P — —
Escherichia coli BL21 0.74 ECD_02243 tRNA pseudouridine(38-40) synthase 0.78 ECD_04017 polyproline-specific translation elongation factor EF-P — —
Escherichia coli BW25113 0.74 b2318 truA tRNA pseudouridine synthase A (NCBI) 0.78 b4147 efp elongation factor P (NCBI) — —
Enterobacter sp. TBS_079 0.74 MPMX20_03253 tRNA pseudouridine synthase A 0.77 MPMX20_00426 Elongation factor P — —
Erwinia amylovora T8 0.73 OLJFJH_11240 tRNA pseudouridine(38-40) synthase TruA 0.74 OLJFJH_02585 elongation factor P — —
Serratia liquefaciens MT49 0.73 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA 0.72 IAI46_01510 elongation factor P — —
Pectobacterium carotovorum WPP14 0.72 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA 0.72 HER17_RS02355 elongation factor P — —
Dickeya dadantii 3937 0.71 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA 0.73 DDA3937_RS18995 elongation factor P — —
Dickeya dianthicola ME23 0.71 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA 0.74 DZA65_RS20205 elongation factor P — —
Erwinia tracheiphila SCR3 0.71 LU632_RS07825 truA tRNA pseudouridine(38-40) synthase TruA 0.74 LU632_RS01885 efp elongation factor P — —
Dickeya dianthicola 67-19 0.71 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA 0.74 HGI48_RS19085 elongation factor P — —
Pantoea sp. MT58 0.71 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA 0.71 IAI47_17290 elongation factor P — —
Shewanella amazonensis SB2B 0.70 Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) 0.26 Sama_1699 elongation factor P (RefSeq) — —
Rahnella sp. WP5 0.70 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA 0.70 EX31_RS08935 elongation factor P — —
Shewanella loihica PV-4 0.69 Shew_2306 tRNA pseudouridine synthase A (RefSeq) 0.28 Shew_1915 elongation factor P (RefSeq) — —
Shewanella sp. ANA-3 0.67 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) 0.24 Shewana3_2141 elongation factor P (RefSeq) — —
Alteromonas macleodii MIT1002 0.66 MIT1002_02529 tRNA pseudouridine synthase A 0.84 MIT1002_00682 Elongation factor P — —
Kangiella aquimarina DSM 16071 0.61 B158DRAFT_1483 pseudouridylate synthase I 0.67 B158DRAFT_0985 translation elongation factor P low > 40
Pseudomonas aeruginosa PA14 0.55 IKLFDK_15845 tRNA pseudouridine(38-40) synthase TruA 0.24 IKLFDK_14480 elongation factor P — —
Marinobacter adhaerens HP15 0.53 HP15_1829 tRNA pseudouridine synthase A 0.66 HP15_2513 translation elongation factor P — —
Pseudomonas stutzeri RCH2 0.52 Psest_2585 pseudouridylate synthase I 0.24 Psest_1799 translation elongation factor P — —
Dechlorosoma suillum PS 0.52 Dsui_3194 pseudouridylate synthase I 0.30 Dsui_2467 translation elongation factor P — —
Acinetobacter radioresistens SK82 0.50 MPMX26_00352 tRNA pseudouridine synthase A 0.68 MPMX26_01067 Elongation factor P — —
Burkholderia phytofirmans PsJN 0.47 BPHYT_RS33885 tRNA pseudouridine synthase A 0.25 BPHYT_RS14330 elongation factor P — —
Rhodanobacter sp000427505 FW510-R12 0.47 LRK53_RS08335 tRNA pseudouridine(38-40) synthase TruA 0.64 LRK53_RS07465 elongation factor P — —
Rhodanobacter denitrificans MT42 0.46 LRK55_RS01480 tRNA pseudouridine(38-40) synthase TruA 0.63 LRK55_RS02235 elongation factor P — —
Rhodanobacter denitrificans FW104-10B01 0.46 LRK54_RS01700 tRNA pseudouridine(38-40) synthase TruA 0.63 LRK54_RS02480 elongation factor P — —
Rhodanobacter sp. FW510-T8 0.46 OKGIIK_04830 truA tRNA pseudouridine(38-40) synthase TruA 0.63 OKGIIK_09535 Elongation factor P — —
Dyella japonica UNC79MFTsu3.2 0.45 ABZR86_RS08015 tRNA pseudouridine(38-40) synthase TruA 0.61 ABZR86_RS08795 elongation factor P — —
Acidovorax sp. GW101-3H11 0.45 Ac3H11_1532 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.28 Ac3H11_366 Translation elongation factor P — —
Paraburkholderia graminis OAS925 0.45 ABIE53_004807 tRNA pseudouridine38-40 synthase 0.26 ABIE53_003027 elongation factor P — —
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_06069 tRNA pseudouridine38-40 synthase 0.26 H281DRAFT_04370 translation elongation factor P (EF-P) — —
Lysobacter sp. OAE881 0.44 ABIE51_RS08245 tRNA pseudouridine(38-40) synthase TruA 0.67 ABIE51_RS13500 elongation factor P — —
Variovorax sp. SCN45 0.44 GFF3885 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) 0.27 GFF2861 Translation elongation factor P — —
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA 0.26 QEN71_RS04655 elongation factor P — —
Variovorax sp. OAS795 0.44 ABID97_RS08440 tRNA pseudouridine(38-40) synthase TruA 0.27 ABID97_RS10625 elongation factor P — —
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.1961.1 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.60 Xcc-8004.2286.1 Translation elongation factor P — —
Castellaniella sp019104865 MT123 0.43 ABCV34_RS04265 tRNA pseudouridine(38-40) synthase TruA 0.29 ABCV34_RS01630 elongation factor P — —
Ralstonia solanacearum UW163 0.43 UW163_RS11130 tRNA pseudouridine(38-40) synthase TruA 0.27 UW163_RS11980 elongation factor P — —
Ralstonia solanacearum IBSBF1503 0.43 RALBFv3_RS02595 tRNA pseudouridine(38-40) synthase TruA 0.27 RALBFv3_RS14515 elongation factor P — —
Ralstonia solanacearum PSI07 0.42 RPSI07_RS14720 tRNA pseudouridine(38-40) synthase TruA 0.25 RPSI07_RS18945 elongation factor P — —
Ralstonia solanacearum GMI1000 0.42 RS_RS09975 tRNA pseudouridine(38-40) synthase TruA 0.25 RS_RS05295 elongation factor P — —
Methylophilus sp. DMC18 0.42 GFF654 tRNA pseudouridine synthase A 0.27 GFF374 Elongation factor P — —
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS14510 tRNA pseudouridine(38-40) synthase TruA 0.28 ABZR87_RS10235 elongation factor P — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF3357 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.28 GFF3844 Translation elongation factor P — —
Cupriavidus basilensis FW507-4G11 0.39 RR42_RS14370 tRNA pseudouridine synthase A 0.25 RR42_RS14010 elongation factor P — —
Bosea sp. OAE506 0.35 ABIE41_RS00165 tRNA pseudouridine(38-40) synthase TruA 0.28 ABIE41_RS00085 elongation factor P — —
Magnetospirillum magneticum AMB-1 0.32 AMB_RS01225 tRNA pseudouridine(38-40) synthase TruA 0.27 AMB_RS06540 elongation factor P — —
Rhodospirillum rubrum S1H 0.32 Rru_A3352 Pseudouridylate synthase (NCBI) 0.29 Rru_A1077 Elongation factor P (NCBI) — —
Agrobacterium fabrum C58 0.31 Atu0368 tRNA pseudouridine synthase I 0.32 Atu2553 elongation factor P — —
Xanthobacter sp. DMC5 0.31 GFF2045 tRNA pseudouridine synthase A 0.28 GFF1897 Elongation factor P — —
Rhizobium sp. OAE497 0.31 ABIE40_RS01915 tRNA pseudouridine(38-40) synthase TruA 0.32 ABIE40_RS18560 elongation factor P — —
Caulobacter crescentus NA1000 Δfur 0.31 CCNA_00280 tRNA pseudouridine synthase A 0.31 CCNA_00758 translation elongation factor P EF-P — —
Sinorhizobium meliloti 1021 0.31 SMc01099 tRNA pseudouridine synthase A 0.30 SMc00357 elongation factor P — —
Caulobacter crescentus NA1000 0.31 CCNA_00280 tRNA pseudouridine synthase A 0.31 CCNA_00758 translation elongation factor P EF-P — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.30 CA264_17725 tRNA pseudouridine synthase A 0.33 CA264_07750 elongation factor P low > 74
Synechococcus elongatus PCC 7942 0.29 Synpcc7942_2207 truA tRNA pseudouridine synthase A 0.41 Synpcc7942_2565 efp elongation factor P — —
Phocaeicola dorei CL03T12C01 0.29 ABI39_RS12690 tRNA pseudouridine(38-40) synthase TruA 0.30 ABI39_RS02760 elongation factor P — —
Brevundimonas sp. GW460-12-10-14-LB2 0.29 A4249_RS12340 tRNA pseudouridine(38-40) synthase TruA 0.29 A4249_RS08830 elongation factor P — —
Phocaeicola vulgatus CL09T03C04 0.29 HMPREF1058_RS16775 tRNA pseudouridine(38-40) synthase TruA 0.30 HMPREF1058_RS08535 elongation factor P low > 67
Bacteroides ovatus ATCC 8483 0.29 BACOVA_05075 tRNA pseudouridine synthase A 0.31 BACOVA_03523 translation elongation factor P low > 94
Synechocystis sp000284455 PCC 6803 0.29 SGL_RS05725 tRNA pseudouridine(38-40) synthase TruA 0.41 SGL_RS13730 elongation factor P — —
Phaeobacter inhibens DSM 17395 0.28 PGA1_c05650 tRNA pseudouridine synthase A 0.25 PGA1_c23980 translation elongation factor P low > 62
Rhodopseudomonas palustris CGA009 0.28 TX73_003225 tRNA pseudouridine(38-40) synthase TruA 0.27 TX73_012985 elongation factor P — —
Bacteroides thetaiotaomicron VPI-5482 0.28 BT4237 tRNA pseudouridine synthase A (NCBI ptt file) 0.31 BT3709 elongation factor P (NCBI ptt file) — —
Bacteroides stercoris CC31F 0.28 HMPREF1181_RS06250 tRNA pseudouridine(38-40) synthase TruA 0.31 HMPREF1181_RS03235 elongation factor P low > 56
Cellulophaga baltica 18 0.27 M666_RS00300 tRNA pseudouridine(38-40) synthase TruA 0.35 M666_RS17195 elongation factor P low > 67
Dinoroseobacter shibae DFL-12 0.27 Dshi_1938 tRNA pseudouridine synthase A (RefSeq) 0.26 Dshi_2094 translation elongation factor P (RefSeq) 0.49 3
Echinicola vietnamensis KMM 6221, DSM 17526 0.26 Echvi_1728 pseudouridylate synthase I 0.39 Echvi_0189 translation elongation factor P — —
Pedobacter sp. GW460-11-11-14-LB5 0.25 CA265_RS15580 tRNA pseudouridine(38-40) synthase TruA 0.34 CA265_RS21470 elongation factor P low > 88
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS16085 tRNA pseudouridine(38-40) synthase TruA 0.27 HMPREF1078_RS04925 elongation factor P low > 61
Desulfovibrio vulgaris Hildenborough JW710 0.25 DVU0911 truA tRNA pseudouridine synthase A (TIGR) 0.39 DVU1666 efp translation elongation factor P (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.25 DvMF_1395 truA tRNA pseudouridine synthase A (RefSeq) 0.39 DvMF_0372 translation elongation factor P (RefSeq) low > 51
Mucilaginibacter yixingensis YX-36 DSM 26809 0.24 ABZR88_RS21140 tRNA pseudouridine(38-40) synthase TruA 0.30 ABZR88_RS21185 elongation factor P — —
Mycobacterium tuberculosis H37Rv 0.21 Rv3455c Probable tRNA pseudouridine synthase a TruA (pseudouridylate synthase I) (pseudouridine synthase I) (uracil hydrolyase) 0.41 Rv2534c Probable elongation factor P Efp — —
Bifidobacterium breve UCC2003 0.21 BBR_RS18795 tRNA pseudouridine(38-40) synthase TruA 0.38 BBR_RS13620 elongation factor P — —
Fusobacterium nucleatum SB010 0.20 HUW76_09850 tRNA pseudouridine(38-40) synthase TruA 0.33 HUW76_04460 elongation factor P — —

Not shown: 20 genomes with orthologs for CSW01_05090 only; 1 genomes with orthologs for CSW01_13445 only