Conservation of cofitness between CSW01_03705 and CSW01_12545 in Vibrio cholerae E7946 ATCC 55056

100 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03705 chaperone protein ClpB 1.0 CSW01_12545 5-formyltetrahydrofolate cyclo-ligase 0.51 13
Shewanella amazonensis SB2B 0.80 Sama_2603 clpB protein (RefSeq) 0.50 Sama_2726 5-formyltetrahydrofolate cyclo-ligase family protein (RefSeq) low > 62
Shewanella oneidensis MR-1 0.80 SO3577 clpB clpB protein (NCBI ptt file) 0.53 SO0774 5-formyltetrahydrofolate cyclo-ligase family protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.80 Shewana3_3169 ATPase (RefSeq) 0.52 Shewana3_3506 5-formyltetrahydrofolate cyclo-ligase (RefSeq) low > 73
Shewanella loihica PV-4 0.80 Shew_2948 ATPase (RefSeq) 0.46 Shew_3069 5-formyltetrahydrofolate cyclo-ligase (RefSeq) low > 60
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.78 GFF4184 ClpB protein 0.51 GFF3012 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) low > 78
Enterobacter asburiae PDN3 0.78 EX28DRAFT_2693 ATP-dependent chaperone ClpB 0.51 EX28DRAFT_2964 5,10-methenyltetrahydrofolate synthetase low > 76
Enterobacter sp. TBS_079 0.78 MPMX20_03461 Chaperone protein ClpB 0.54 MPMX20_03770 5-formyltetrahydrofolate cyclo-ligase low > 85
Dickeya dianthicola ME23 0.78 DZA65_RS17320 ATP-dependent chaperone ClpB 0.50 DZA65_RS02475 5-formyltetrahydrofolate cyclo-ligase low > 75
Escherichia coli ECRC101 0.78 MCAODC_11795 clpB ATP-dependent chaperone ClpB 0.55 MCAODC_10005 ygfA 5-formyltetrahydrofolate cyclo-ligase low > 87
Escherichia fergusonii Becca 0.78 EFB2_01298 Chaperone protein ClpB 0.55 EFB2_00991 5-formyltetrahydrofolate cyclo-ligase low > 86
Klebsiella pneumoniae MKP103 0.78 KDGMDA_02125 ATP-dependent chaperone ClpB 0.51 KDGMDA_04415 5-formyltetrahydrofolate cyclo-ligase low > 95
Escherichia coli ECRC62 0.78 BNILDI_11745 clpB ATP-dependent chaperone ClpB 0.55 BNILDI_09930 ygfA 5-formyltetrahydrofolate cyclo-ligase low > 75
Escherichia coli ECRC98 0.78 JDDGAC_24930 clpB ATP-dependent chaperone ClpB 0.55 JDDGAC_23125 ygfA 5-formyltetrahydrofolate cyclo-ligase low > 87
Escherichia coli ECRC99 0.78 KEDOAH_06955 clpB ATP-dependent chaperone ClpB 0.55 KEDOAH_08655 ygfA 5-formyltetrahydrofolate cyclo-ligase
Escherichia coli HS(pFamp)R (ATCC 700891) 0.78 OHPLBJKB_01114 Chaperone protein ClpB 0.53 OHPLBJKB_00804 5-formyltetrahydrofolate cyclo-ligase low > 74
Escherichia coli ECRC100 0.78 OKFHMN_21265 clpB ATP-dependent chaperone ClpB 0.55 OKFHMN_19485 ygfA 5-formyltetrahydrofolate cyclo-ligase low > 79
Escherichia coli BL21 0.78 ECD_02482 protein disaggregation chaperone 0.53 ECD_02743 5-formyltetrahydrofolate cyclo-ligase family protein low > 61
Escherichia coli ECOR27 0.78 NOLOHH_12940 clpB ATP-dependent chaperone ClpB 0.55 NOLOHH_11395 ygfA 5-formyltetrahydrofolate cyclo-ligase low > 76
Escherichia coli BW25113 0.78 b2592 clpB protein disaggregation chaperone (NCBI) 0.54 b2912 ygfA putative ligase (VIMSS) low > 76
Escherichia coli ECOR38 0.78 HEPCGN_20390 clpB ATP-dependent chaperone ClpB 0.55 HEPCGN_18775 ygfA 5-formyltetrahydrofolate cyclo-ligase low > 88
Escherichia coli ECRC102 0.78 NIAGMN_19035 clpB ATP-dependent chaperone ClpB 0.55 NIAGMN_17250 ygfA 5-formyltetrahydrofolate cyclo-ligase low > 80
Klebsiella michiganensis M5al 0.78 BWI76_RS21440 ATP-dependent chaperone ClpB 0.49 BWI76_RS23915 5-formyltetrahydrofolate cyclo-ligase low > 92
Dickeya dianthicola 67-19 0.78 HGI48_RS16225 ATP-dependent chaperone ClpB 0.50 HGI48_RS02370 5-formyltetrahydrofolate cyclo-ligase low > 71
Escherichia coli Nissle 1917 0.78 ECOLIN_RS14665 ATP-dependent chaperone ClpB 0.55 ECOLIN_RS16205 5-formyltetrahydrofolate cyclo-ligase
Pectobacterium carotovorum WPP14 0.77 HER17_RS05410 ATP-dependent chaperone ClpB 0.53 HER17_RS19095 5-formyltetrahydrofolate cyclo-ligase low > 75
Dickeya dadantii 3937 0.77 DDA3937_RS16100 ATP-dependent chaperone ClpB 0.51 DDA3937_RS02410 5-formyltetrahydrofolate cyclo-ligase low > 74
Serratia liquefaciens MT49 0.77 IAI46_03995 ATP-dependent chaperone ClpB 0.54 IAI46_20895 5-formyltetrahydrofolate cyclo-ligase low > 87
Pantoea agglomerans CFBP13505 P0401 0.77 PagCFBP13505_RS16530 ATP-dependent chaperone ClpB 0.51 PagCFBP13505_RS15970 5-formyltetrahydrofolate cyclo-ligase low > 74
Pantoea sp. MT58 0.77 IAI47_04435 ATP-dependent chaperone ClpB 0.50 IAI47_03730 5-formyltetrahydrofolate cyclo-ligase low > 76
Rahnella sp. WP5 0.76 EX31_RS07560 ATP-dependent chaperone ClpB 0.52 EX31_RS21480 5-formyltetrahydrofolate cyclo-ligase low > 89
Erwinia amylovora T8 0.76 OLJFJH_09740 ATP-dependent chaperone ClpB 0.50 OLJFJH_08740 5-formyltetrahydrofolate cyclo-ligase low > 58
Erwinia tracheiphila HP pepo 2.2 0.76 IJEDHG_26855 clpB ATP-dependent chaperone ClpB 0.54 IJEDHG_03315 5-formyltetrahydrofolate cyclo-ligase
Erwinia tracheiphila SCR3 0.76 LU632_RS16935 clpB ATP-dependent chaperone ClpB 0.54 LU632_RS05860 5-formyltetrahydrofolate cyclo-ligase
Marinobacter adhaerens HP15 0.74 HP15_529 protein disaggregation chaperone 0.34 HP15_3211 5-formyltetrahydrofolate cyclo-ligase low > 73
Kangiella aquimarina DSM 16071 0.74 B158DRAFT_2535 ATP-dependent chaperone ClpB 0.30 B158DRAFT_0528 5-formyltetrahydrofolate cyclo-ligase low > 40
Pseudomonas sp. SVBP6 0.72 COO64_RS11065 clpB ATP-dependent chaperone ClpB 0.26 COO64_RS01015 5-formyltetrahydrofolate cyclo-ligase low > 93
Lysobacter sp. OAE881 0.72 ABIE51_RS04925 ATP-dependent chaperone ClpB 0.24 ABIE51_RS17355 5-formyltetrahydrofolate cyclo-ligase low > 62
Pseudomonas sp. RS175 0.71 PFR28_03746 Chaperone protein ClpB 0.26 PFR28_04325 5-formyltetrahydrofolate cyclo-ligase low > 88
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_5129 ClpB protein 0.28 Pf6N2E2_4476 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) low > 103
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_15935 ATP-dependent chaperone ClpB 0.27 AO356_12990 5-formyltetrahydrofolate cyclo-ligase low > 104
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_2824 ClpB protein 0.27 Pf1N1B4_2225 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) low > 87
Pseudomonas orientalis W4I3 0.71 QF045_RS06815 ATP-dependent chaperone ClpB 0.28 QF045_RS01680 5-formyltetrahydrofolate cyclo-ligase low > 93
Pseudomonas lactucae CFBP13502 0.71 GEMAOFIL_00971 Chaperone protein ClpB 0.30 GEMAOFIL_05599 5-formyltetrahydrofolate cyclo-ligase low > 96
Pseudomonas sp. S08-1 0.71 OH686_16420 ATP-dependent chaperone protein ClpB 0.27 OH686_11225 5-formyltetrahydrofolate cyclo-ligase low > 80
Pseudomonas aeruginosa PA14 0.71 IKLFDK_00820 Chaperone protein ClpB 0.32 IKLFDK_27325 5-formyltetrahydrofolate cyclo-ligase low > 98
Pseudomonas simiae WCS417 0.71 PS417_03830 protein disaggregation chaperone 0.28 PS417_27305 5-formyltetrahydrofolate cyclo-ligase low > 88
Pseudomonas aeruginosa PUPa3 0.71 DQ20_RS56205 clpB;go_function=ATP ATP-dependent chaperone ClpB 0.32 DQ20_RS50105 5-formyltetrahydrofolate cyclo-ligase low > 101
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS03880 ATP-dependent chaperone ClpB 0.28 PFLU_RS28965 5-formyltetrahydrofolate cyclo-ligase low > 109
Pseudomonas fluorescens SBW25 0.71 PFLU_RS03880 ATP-dependent chaperone ClpB 0.28 PFLU_RS28965 5-formyltetrahydrofolate cyclo-ligase low > 109
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_1495 ClpB protein 0.27 PfGW456L13_892 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) low > 87
Pseudomonas stutzeri RCH2 0.71 Psest_0711 ATP-dependent chaperone ClpB 0.31 Psest_0170 5,10-methenyltetrahydrofolate synthetase low > 67
Pseudomonas aeruginosa MRSN321 0.71 DY961_RS23740 clpB;go_function=ATP ATP-dependent chaperone ClpB 0.32 DY961_RS12015 5-formyltetrahydrofolate cyclo-ligase low > 100
Pseudomonas syringae pv. syringae B728a 0.70 Psyr_0728 AAA ATPase, central region:Clp, N terminal:Clp, N terminal 0.29 Psyr_0317 5-formyltetrahydrofolate cyclo-ligase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.70 Psyr_0728 AAA ATPase, central region:Clp, N terminal:Clp, N terminal 0.29 Psyr_0317 5-formyltetrahydrofolate cyclo-ligase low > 86
Pseudomonas fluorescens FW300-N2E3 0.70 AO353_14230 ATP-dependent chaperone ClpB 0.30 AO353_08780 5-formyltetrahydrofolate cyclo-ligase low > 101
Xanthomonas campestris pv. campestris strain 8004 0.70 Xcc-8004.1382.1 ClpB protein 0.25 Xcc-8004.1138.1 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) low > 74
Pseudomonas sp. BP01 0.70 JOY50_RS27140 clpB ATP-dependent chaperone ClpB 0.29 JOY50_RS22470 5-formyltetrahydrofolate cyclo-ligase low > 84
Pseudomonas sp. DMC3 0.70 GFF4006 Chaperone protein ClpB 0.26 GFF320 5-formyltetrahydrofolate cyclo-ligase low > 89
Pseudomonas putida KT2440 0.70 PP_0625 Chaperone protein ClpB 0.29 PP_5203 5-formyltetrahydrofolate cyclo-ligase low > 96
Dyella japonica UNC79MFTsu3.2 0.70 ABZR86_RS10940 ATP-dependent chaperone ClpB 0.24 ABZR86_RS11995 5-formyltetrahydrofolate cyclo-ligase low > 74
Pseudomonas segetis P6 0.70 MPMX49_03920 Chaperone protein ClpB 0.32 MPMX49_04492 5-formyltetrahydrofolate cyclo-ligase low > 75
Rhodanobacter denitrificans MT42 0.69 LRK55_RS04735 ATP-dependent chaperone ClpB 0.26 LRK55_RS11395 5-formyltetrahydrofolate cyclo-ligase low > 63
Rhodanobacter sp000427505 FW510-R12 0.69 LRK53_RS05055 ATP-dependent chaperone ClpB 0.21 LRK53_RS16890 5-formyltetrahydrofolate cyclo-ligase low > 59
Rhodanobacter sp. FW510-T8 0.69 OKGIIK_01800 clpB ATP-dependent chaperone ClpB 0.26 OKGIIK_12225 5-formyltetrahydrofolate cyclo-ligase low > 53
Rhodanobacter denitrificans FW104-10B01 0.69 LRK54_RS04955 ATP-dependent chaperone ClpB 0.26 LRK54_RS11670 5-formyltetrahydrofolate cyclo-ligase 0.50 33
Ralstonia solanacearum PSI07 0.65 RPSI07_RS17450 ATP-dependent chaperone ClpB 0.16 RPSI07_RS23505 5-formyltetrahydrofolate cyclo-ligase low > 81
Cupriavidus basilensis FW507-4G11 0.65 RR42_RS12455 protein disaggregation chaperone 0.14 RR42_RS01400 5-formyltetrahydrofolate cyclo-ligase low > 128
Ralstonia solanacearum UW163 0.65 UW163_RS13360 ATP-dependent chaperone ClpB 0.16 UW163_RS03715 5-formyltetrahydrofolate cyclo-ligase
Ralstonia solanacearum IBSBF1503 0.65 RALBFv3_RS00030 ATP-dependent chaperone ClpB 0.16 RALBFv3_RS09865 5-formyltetrahydrofolate cyclo-ligase low > 76
Ralstonia sp. UNC404CL21Col 0.65 ABZR87_RS11485 ATP-dependent chaperone ClpB 0.16 ABZR87_RS04880 5-formyltetrahydrofolate cyclo-ligase low > 80
Ralstonia solanacearum GMI1000 0.65 RS_RS06695 chaperone protein ClpB 0.14 RS_RS00450 5-formyltetrahydrofolate cyclo-ligase low > 80
Acinetobacter radioresistens SK82 0.64 MPMX26_01096 Chaperone protein ClpB 0.27 MPMX26_02298 5-formyltetrahydrofolate cyclo-ligase low > 36
Acinetobacter baumannii LAC-4 0.63 RR41_RS10060 ATP-dependent chaperone ClpB 0.24 RR41_RS09105 5-formyltetrahydrofolate cyclo-ligase
Castellaniella sp019104865 MT123 0.62 ABCV34_RS06205 ATP-dependent chaperone ClpB 0.16 ABCV34_RS13555 5-formyltetrahydrofolate cyclo-ligase
Azospirillum sp. SherDot2 0.58 MPMX19_02442 Chaperone protein ClpB 0.15 MPMX19_00693 5-formyltetrahydrofolate cyclo-ligase 0.62 1
Azospirillum brasilense Sp245 0.58 AZOBR_RS18950 ATPase AAA 0.18 AZOBR_RS09025 5-formyltetrahydrofolate cyclo-ligase low > 97
Sphingomonas koreensis DSMZ 15582 0.56 Ga0059261_1434 ATP-dependent chaperone ClpB 0.18 Ga0059261_0735 5,10-methenyltetrahydrofolate synthetase low > 68
Brevundimonas sp. GW460-12-10-14-LB2 0.56 A4249_RS11010 ATP-dependent chaperone ClpB 0.15 A4249_RS00800 5-formyltetrahydrofolate cyclo-ligase low > 48
Agrobacterium fabrum C58 0.56 Atu4177 ATP-dependent Clp protease, ATP-binding subunit 0.21 Atu3731 5-formyltetrahydrofolate cyclo-ligase low > 89
Bosea sp. OAE506 0.56 ABIE41_RS23785 ATP-dependent chaperone ClpB 0.16 ABIE41_RS09445 5-formyltetrahydrofolate cyclo-ligase low > 77
Caulobacter crescentus NA1000 0.56 CCNA_00922 ClpB protein 0.21 CCNA_03354 5-formyltetrahydrofolate cyclo-ligase low > 66
Caulobacter crescentus NA1000 Δfur 0.56 CCNA_00922 ClpB protein 0.21 CCNA_03354 5-formyltetrahydrofolate cyclo-ligase low > 67
Rhodopseudomonas palustris CGA009 0.56 TX73_023005 ATP-dependent chaperone ClpB 0.18 TX73_023120 5-formyltetrahydrofolate cyclo-ligase low > 86
Synechocystis sp000284455 PCC 6803 0.55 SGL_RS11615 ATP-dependent chaperone ClpB 0.14 SGL_RS04360 5-formyltetrahydrofolate cyclo-ligase low > 52
Synechococcus elongatus PCC 7942 0.55 Synpcc7942_1089 clpB ATPase 0.14 Synpcc7942_1300 hypothetical protein low > 38
Phaeobacter inhibens DSM 17395 0.55 PGA1_c32440 chaperone protein ClpB 0.14 PGA1_c21820 5-formyltetrahydrofolate cycloligase-like protein 0.41 9
Magnetospirillum magneticum AMB-1 0.55 AMB_RS07865 ATP-dependent chaperone ClpB 0.16 AMB_RS16280 5-formyltetrahydrofolate cyclo-ligase low > 64
Sphingobium sp. HT1-2 0.55 GFF1039 Chaperone protein ClpB (ATP-dependent unfoldase) 0.23 GFF2137 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) low > 95
Desulfovibrio vulgaris Miyazaki F 0.54 DvMF_0567 ATP-dependent chaperone ClpB (RefSeq) 0.19 DvMF_2318 5-formyltetrahydrofolate cyclo-ligase (RefSeq) low > 51
Mycobacterium tuberculosis H37Rv 0.53 Rv0384c Probable endopeptidase ATP binding protein (chain B) ClpB (ClpB protein) (heat shock protein F84.1) 0.13 Rv0992c Conserved hypothetical protein
Bacteroides stercoris CC31F 0.53 HMPREF1181_RS11960 ATP-dependent chaperone ClpB 0.17 HMPREF1181_RS06170 5-formyltetrahydrofolate cyclo-ligase low > 56
Mucilaginibacter yixingensis YX-36 DSM 26809 0.53 ABZR88_RS10630 ATP-dependent chaperone ClpB 0.13 ABZR88_RS21200 5-formyltetrahydrofolate cyclo-ligase low > 71
Bacteroides ovatus ATCC 8483 0.53 BACOVA_05393 ATP-dependent chaperone protein ClpB 0.17 BACOVA_05091 5-formyltetrahydrofolate cyclo-ligase low > 96
Bacteroides thetaiotaomicron VPI-5482 0.52 BT4597 endopeptidase Clp ATP-binding chain B (NCBI ptt file) 0.18 BT4258 putative 5-formyltetrahydrofolate cyclo-ligase (NCBI ptt file) low > 81
Pontibacter actiniarum KMM 6156, DSM 19842 0.52 CA264_14135 ATP-dependent chaperone ClpB 0.22 CA264_15880 5-formyltetrahydrofolate cyclo-ligase low > 74
Cellulophaga baltica 18 0.52 M666_RS14965 ATP-dependent chaperone ClpB 0.17 M666_RS03740 5-formyltetrahydrofolate cyclo-ligase low > 67
Pedobacter sp. GW460-11-11-14-LB5 0.51 CA265_RS12775 ATP-dependent chaperone ClpB 0.16 CA265_RS21460 5-formyltetrahydrofolate cyclo-ligase low > 88
Fusobacterium nucleatum SB010 0.51 HUW76_09935 ATP-dependent chaperone ClpB 0.15 HUW76_05675 5-formyltetrahydrofolate cyclo-ligase low > 35
Phocaeicola dorei CL03T12C01 0.51 ABI39_RS18885 ATP-dependent chaperone ClpB 0.17 ABI39_RS13145 5-formyltetrahydrofolate cyclo-ligase low > 72
Phocaeicola vulgatus CL09T03C04 0.51 HMPREF1058_RS04980 ATP-dependent chaperone ClpB 0.17 HMPREF1058_RS17145 5-formyltetrahydrofolate cyclo-ligase low > 67

Not shown: 21 genomes with orthologs for CSW01_03705 only; 0 genomes with orthologs for CSW01_12545 only