Conservation of cofitness between CSW01_09445 and CSW01_06140 in Vibrio cholerae E7946 ATCC 55056

99 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09445 transcription-repair coupling factor 1.0 CSW01_06140 excinuclease ABC subunit C 0.58 3
Rahnella sp. WP5 0.65 EX31_RS24520 transcription-repair coupling factor 0.65 EX31_RS24150 excinuclease ABC subunit UvrC low > 89
Escherichia coli ECOR38 0.65 HEPCGN_24015 mfd transcription-repair coupling factor 0.64 HEPCGN_04180 uvrC excinuclease ABC subunit UvrC low > 88
Serratia liquefaciens MT49 0.64 IAI46_10320 transcription-repair coupling factor 0.65 IAI46_09210 excinuclease ABC subunit UvrC low > 87
Escherichia coli BW25113 0.64 b1114 mfd transcription-repair coupling factor (NCBI) 0.64 b1913 uvrC excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) 0.52 1
Escherichia coli ECRC100 0.64 OKFHMN_03470 mfd transcription-repair coupling factor 0.64 OKFHMN_25825 uvrC excinuclease ABC subunit UvrC low > 79
Escherichia coli ECRC99 0.64 KEDOAH_24285 mfd transcription-repair coupling factor 0.64 KEDOAH_02265 uvrC excinuclease ABC subunit UvrC — —
Escherichia fergusonii Becca 0.64 EFB2_02861 Transcription-repair-coupling factor 0.64 EFB2_02033 UvrABC system protein C low > 86
Escherichia coli ECRC98 0.64 JDDGAC_07130 mfd transcription-repair coupling factor 0.64 JDDGAC_00415 uvrC excinuclease ABC subunit UvrC low > 87
Escherichia coli ECRC102 0.64 NIAGMN_24360 mfd transcription-repair coupling factor 0.64 NIAGMN_02225 uvrC excinuclease ABC subunit UvrC low > 80
Escherichia coli ECRC101 0.64 MCAODC_22830 mfd transcription-repair coupling factor 0.64 MCAODC_19565 uvrC excinuclease ABC subunit UvrC low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.64 OHPLBJKB_02552 Transcription-repair-coupling factor 0.64 OHPLBJKB_01816 UvrABC system protein C low > 74
Escherichia coli BL21 0.64 ECD_01110 transcription-repair coupling factor 0.65 ECD_01878 excinuclease UvrABC, endonuclease subunit low > 61
Escherichia coli ECOR27 0.64 NOLOHH_20995 mfd transcription-repair coupling factor 0.64 NOLOHH_16445 uvrC excinuclease ABC subunit UvrC low > 76
Escherichia coli ECRC62 0.64 BNILDI_19160 mfd transcription-repair coupling factor 0.64 BNILDI_15235 uvrC excinuclease ABC subunit UvrC low > 75
Pectobacterium carotovorum WPP14 0.64 HER17_RS08775 transcription-repair coupling factor 0.63 HER17_RS07715 excinuclease ABC subunit UvrC low > 75
Pantoea sp. MT58 0.64 IAI47_11975 transcription-repair coupling factor 0.65 IAI47_12465 excinuclease ABC subunit UvrC low > 76
Enterobacter asburiae PDN3 0.64 EX28DRAFT_1816 transcription-repair coupling factor (mfd) 0.63 EX28DRAFT_0634 Excinuclease ABC subunit C 0.47 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF3397 Transcription-repair coupling factor 0.64 GFF1700 Excinuclease ABC subunit C low > 78
Klebsiella michiganensis M5al 0.64 BWI76_RS11205 transcription-repair coupling factor 0.65 BWI76_RS18330 excinuclease ABC subunit C low > 92
Enterobacter sp. TBS_079 0.64 MPMX20_01795 Transcription-repair-coupling factor 0.63 MPMX20_02838 UvrABC system protein C low > 85
Dickeya dadantii 3937 0.64 DDA3937_RS13000 transcription-repair coupling factor 0.65 DDA3937_RS13700 excinuclease ABC subunit UvrC low > 74
Erwinia amylovora T8 0.64 OLJFJH_15445 transcription-repair coupling factor 0.64 OLJFJH_15790 excinuclease ABC subunit UvrC low > 58
Dickeya dianthicola 67-19 0.64 HGI48_RS13065 transcription-repair coupling factor 0.64 HGI48_RS13795 excinuclease ABC subunit UvrC low > 71
Pantoea agglomerans CFBP13505 P0401 0.64 PagCFBP13505_RS19410 transcription-repair coupling factor 0.64 PagCFBP13505_RS04865 excinuclease ABC subunit UvrC low > 74
Dickeya dianthicola ME23 0.63 DZA65_RS13530 transcription-repair coupling factor 0.64 DZA65_RS14285 excinuclease ABC subunit UvrC low > 75
Erwinia tracheiphila SCR3 0.63 LU632_RS14730 mfd transcription-repair coupling factor 0.63 LU632_RS10195 uvrC excinuclease ABC subunit UvrC low > 73
Klebsiella pneumoniae MKP103 0.63 KDGMDA_18800 transcription-repair coupling factor 0.65 KDGMDA_25595 excinuclease ABC subunit UvrC low > 95
Erwinia tracheiphila HP pepo 2.2 0.63 IJEDHG_00560 mfd transcription-repair coupling factor 0.63 IJEDHG_20740 uvrC excinuclease ABC subunit UvrC low > 61
Shewanella loihica PV-4 0.58 Shew_1630 transcription-repair coupling factor (RefSeq) 0.57 Shew_1825 uvrC excinuclease ABC subunit C (RefSeq) 0.61 7
Alteromonas macleodii MIT1002 0.57 MIT1002_01646 Transcription-repair-coupling factor 0.56 MIT1002_02153 Excinuclease ABC subunit C low > 70
Shewanella oneidensis MR-1 0.56 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) 0.58 SO1861 uvrC excinuclease ABC, C subunit (NCBI ptt file) 0.32 8
Shewanella sp. ANA-3 0.56 Shewana3_2289 transcription-repair coupling factor (RefSeq) 0.58 Shewana3_1609 uvrC excinuclease ABC subunit C (RefSeq) low > 73
Shewanella amazonensis SB2B 0.55 Sama_1330 transcription-repair coupling factor (RefSeq) 0.60 Sama_1608 uvrC excinuclease ABC subunit C (RefSeq) 0.56 9
Pseudomonas stutzeri RCH2 0.55 Psest_1653 transcription-repair coupling factor (mfd) 0.52 Psest_2259 excinuclease ABC, C subunit 0.63 2
Pseudomonas aeruginosa PUPa3 0.55 DQ20_RS33625 mfd;go_function=nucleic transcription-repair coupling factor 0.52 DQ20_RS35325 uvrC;go_component=excinuclease excinuclease ABC subunit UvrC low > 101
Pseudomonas aeruginosa PA14 0.55 IKLFDK_15275 transcription-repair coupling factor 0.52 IKLFDK_12970 excinuclease ABC subunit UvrC low > 98
Pseudomonas aeruginosa MRSN321 0.55 DY961_RS01955 mfd;go_function=nucleic transcription-repair coupling factor 0.52 DY961_RS04665 uvrC;go_component=excinuclease excinuclease ABC subunit UvrC low > 100
Pseudomonas sp. S08-1 0.55 OH686_21990 transcription-repair coupling factor 0.49 OH686_00340 excinuclease ABC subunit C low > 80
Pseudomonas sp. SVBP6 0.54 COO64_RS09460 mfd transcription-repair coupling factor 0.51 COO64_RS13930 uvrC excinuclease ABC subunit UvrC low > 93
Pseudomonas segetis P6 0.54 MPMX49_01844 Transcription-repair-coupling factor 0.52 MPMX49_02521 UvrABC system protein C 0.44 32
Pseudomonas syringae pv. syringae B728a 0.54 Psyr_1896 transcription-repair coupling factor 0.51 Psyr_2896 Excinuclease ABC subunit C low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.54 Psyr_1896 transcription-repair coupling factor 0.51 Psyr_2896 Excinuclease ABC subunit C low > 86
Pseudomonas sp. BP01 0.54 JOY50_RS25100 mfd transcription-repair coupling factor 0.51 JOY50_RS06865 uvrC excinuclease ABC subunit UvrC low > 84
Pseudomonas putida KT2440 0.54 PP_2148 transcription-repair coupling factor 0.51 PP_4098 UvrABC system protein C low > 96
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_3916 Transcription-repair coupling factor 0.50 Pf1N1B4_5618 Excinuclease ABC subunit C low > 87
Pseudomonas fluorescens FW300-N2E3 0.54 AO353_00435 transcription-repair coupling factor 0.51 AO353_21835 excinuclease ABC subunit C 0.42 33
Pseudomonas sp. RS175 0.54 PFR28_01123 Transcription-repair-coupling factor 0.48 PFR28_01411 UvrABC system protein C low > 88
Pseudomonas fluorescens FW300-N2E2 0.53 Pf6N2E2_2278 Transcription-repair coupling factor 0.48 Pf6N2E2_2021 Excinuclease ABC subunit C low > 103
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_4027 Transcription-repair coupling factor 0.51 PfGW456L13_2886 Excinuclease ABC subunit C 0.29 23
Pseudomonas simiae WCS417 0.53 PS417_07635 transcription-repair coupling factor 0.51 PS417_10725 excinuclease ABC subunit C 0.27 25
Pseudomonas fluorescens FW300-N2C3 0.53 AO356_02270 transcription-repair coupling factor 0.50 AO356_00350 excinuclease ABC subunit C 0.38 79
Pseudomonas lactucae CFBP13502 0.53 GEMAOFIL_01659 Transcription-repair-coupling factor 0.50 GEMAOFIL_02233 UvrABC system protein C low > 96
Pseudomonas sp. DMC3 0.53 GFF1285 Transcription-repair-coupling factor 0.50 GFF3645 UvrABC system protein C low > 89
Pseudomonas fluorescens SBW25 0.53 PFLU_RS07710 transcription-repair coupling factor 0.50 PFLU_RS10770 excinuclease ABC subunit UvrC low > 109
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS07710 transcription-repair coupling factor 0.50 PFLU_RS10770 excinuclease ABC subunit UvrC low > 109
Pseudomonas orientalis W4I3 0.53 QF045_RS10280 transcription-repair coupling factor 0.50 QF045_RS12805 excinuclease ABC subunit UvrC low > 93
Marinobacter adhaerens HP15 0.52 HP15_2257 transcription-repair-coupling factor 0.47 HP15_1568 excinuclease ABC subunit C 0.74 12
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_1800 transcription-repair coupling factor 0.44 B158DRAFT_1273 Excinuclease ABC subunit C 0.68 28
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS02040 transcription-repair coupling factor 0.46 LRK54_RS00380 excinuclease ABC subunit UvrC low > 59
Dyella japonica UNC79MFTsu3.2 0.49 ABZR86_RS21210 transcription-repair coupling factor 0.43 ABZR86_RS02245 excinuclease ABC subunit UvrC 0.64 11
Rhodanobacter denitrificans MT42 0.49 LRK55_RS01815 transcription-repair coupling factor 0.46 LRK55_RS00120 excinuclease ABC subunit UvrC low > 63
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_09105 mfd transcription-repair coupling factor 0.45 OKGIIK_06930 uvrC excinuclease ABC subunit UvrC low > 53
Lysobacter sp. OAE881 0.49 ABIE51_RS14320 transcription-repair coupling factor 0.42 ABIE51_RS12455 excinuclease ABC subunit UvrC 0.66 5
Rhodanobacter sp000427505 FW510-R12 0.49 LRK53_RS08005 transcription-repair coupling factor 0.46 LRK53_RS09770 excinuclease ABC subunit UvrC low > 59
Xanthomonas campestris pv. campestris strain 8004 0.47 Xcc-8004.1775.1 Transcription-repair coupling factor 0.42 Xcc-8004.2477.1 Excinuclease ABC subunit C low > 74
Ralstonia sp. UNC404CL21Col 0.47 ABZR87_RS13240 transcription-repair coupling factor 0.41 ABZR87_RS10245 excinuclease ABC subunit UvrC low > 80
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS15180 transcription-repair coupling factor 0.41 HSERO_RS09690 excinuclease ABC subunit C 0.41 34
Methylophilus sp. DMC18 0.46 GFF356 Transcription-repair-coupling factor 0.47 GFF496 UvrABC system protein C low > 43
Ralstonia solanacearum GMI1000 0.46 RS_RS08275 transcription-repair coupling factor 0.39 RS_RS05305 excinuclease ABC subunit UvrC low > 80
Ralstonia solanacearum UW163 0.46 UW163_RS14755 transcription-repair coupling factor 0.40 UW163_RS11990 excinuclease ABC subunit UvrC — —
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS01445 transcription-repair coupling factor 0.40 RALBFv3_RS14525 excinuclease ABC subunit UvrC low > 76
Acinetobacter baumannii LAC-4 0.46 RR41_RS12305 transcription-repair coupling factor 0.41 RR41_RS17435 excinuclease ABC subunit UvrC low > 55
Acinetobacter radioresistens SK82 0.45 MPMX26_01319 Transcription-repair-coupling factor 0.40 MPMX26_00228 UvrABC system protein C 0.47 35
Ralstonia solanacearum PSI07 0.45 RPSI07_RS16040 transcription-repair coupling factor 0.40 RPSI07_RS18935 excinuclease ABC subunit UvrC low > 81
Hydrogenophaga sp. GW460-11-11-14-LB1 0.45 GFF4934 Transcription-repair coupling factor 0.36 GFF3847 Excinuclease ABC subunit C — —
Variovorax sp. OAS795 0.45 ABID97_RS17285 transcription-repair coupling factor 0.39 ABID97_RS10635 excinuclease ABC subunit UvrC low > 91
Variovorax sp. SCN45 0.45 GFF412 Transcription-repair coupling factor 0.39 GFF2859 Excinuclease ABC subunit C low > 127
Acidovorax sp. GW101-3H11 0.45 Ac3H11_328 Transcription-repair coupling factor 0.36 Ac3H11_373 Excinuclease ABC subunit C low > 79
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS07845 transcription-repair coupling factor 0.41 RR42_RS14000 excinuclease ABC subunit C 0.49 4
Dechlorosoma suillum PS 0.44 Dsui_2385 transcription-repair coupling factor Mfd 0.45 Dsui_2470 excinuclease ABC, C subunit 0.88 7
Castellaniella sp019104865 MT123 0.43 ABCV34_RS08660 transcription-repair coupling factor 0.38 ABCV34_RS06980 excinuclease ABC subunit UvrC low > 48
Rhodopseudomonas palustris CGA009 0.33 TX73_013805 transcription-repair coupling factor 0.35 TX73_006010 excinuclease ABC subunit UvrC low > 86
Sphingomonas koreensis DSMZ 15582 0.33 Ga0059261_0960 transcription-repair coupling factor (mfd) 0.33 Ga0059261_3186 Excinuclease ABC subunit C 0.50 51
Rhodospirillum rubrum S1H 0.33 Rru_A1726 Transcription-repair coupling factor (NCBI) 0.31 Rru_A2220 Excinuclease ABC, C subunit (NCBI) low > 58
Magnetospirillum magneticum AMB-1 0.32 AMB_RS12390 transcription-repair coupling factor 0.32 AMB_RS19240 UvrABC system protein C low > 64
Azospirillum sp. SherDot2 0.32 MPMX19_00876 Transcription-repair-coupling factor 0.32 MPMX19_01070 UvrABC system protein C low > 112
Caulobacter crescentus NA1000 0.32 CCNA_01920 transcription-repair coupling factor Mfd 0.32 CCNA_02975 excinuclease ABC subunit C 0.64 3
Caulobacter crescentus NA1000 Δfur 0.32 CCNA_01920 transcription-repair coupling factor Mfd 0.32 CCNA_02975 excinuclease ABC subunit C low > 67
Agrobacterium fabrum C58 0.32 Atu1778 transcription-repair coupling factor 0.34 Atu1129 excinuclease ABC chain C 0.64 1
Sinorhizobium meliloti 1021 0.32 SMc04450 transcription-repair coupling factor 0.33 SMc00602 excinuclease ABC subunit C low > 103
Dinoroseobacter shibae DFL-12 0.32 Dshi_1561 transcription-repair coupling factor (RefSeq) 0.34 Dshi_0644 excinuclease ABC, C subunit (RefSeq) 0.52 3
Sphingobium sp. HT1-2 0.32 GFF3606 Transcription-repair coupling factor 0.33 GFF3465 Excinuclease ABC subunit C low > 95
Phaeobacter inhibens DSM 17395 0.31 PGA1_c14920 transcription-repair-coupling factor Mfd 0.33 PGA1_c02880 uvrABC system protein C low > 62
Brevundimonas sp. GW460-12-10-14-LB2 0.31 A4249_RS04775 transcription-repair coupling factor 0.32 A4249_RS01670 excinuclease ABC subunit UvrC low > 48
Rhizobium sp. OAE497 0.31 ABIE40_RS09310 transcription-repair coupling factor 0.33 ABIE40_RS06500 excinuclease ABC subunit UvrC — —
Synechococcus elongatus PCC 7942 0.27 Synpcc7942_1326 mfd transcription-repair coupling factor 0.25 Synpcc7942_1945 uvrC excinuclease ABC subunit C low > 38
Synechocystis sp000284455 PCC 6803 0.26 SGL_RS14485 transcription-repair coupling factor 0.27 SGL_RS07280 excinuclease ABC subunit UvrC low > 52
Pontibacter actiniarum KMM 6156, DSM 19842 0.26 CA264_15820 transcription-repair coupling factor 0.22 CA264_16350 excinuclease ABC subunit C 0.39 56
Pedobacter sp. GW460-11-11-14-LB5 0.25 CA265_RS21070 transcription-repair coupling factor 0.23 CA265_RS18110 excinuclease ABC subunit C 0.40 11

Not shown: 9 genomes with orthologs for CSW01_09445 only; 15 genomes with orthologs for CSW01_06140 only