| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_12735 | | RidA family protein | 1.0 | CSW01_04820 | | serine hydroxymethyltransferase | 0.88 | 17 |
| Escherichia coli BL21 | 0.81 | ECD_04111 | | enamine/imine deaminase, reaction intermediate detoxification | 0.79 | ECD_02443 | | serine hydroxymethyltransferase | low | > 61 |
| Escherichia coli ECRC62 | 0.81 | BNILDI_07375 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | 0.79 | BNILDI_11985 | glyA | serine hydroxymethyltransferase | low | > 75 |
| Escherichia coli ECRC101 | 0.81 | MCAODC_02380 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | 0.79 | MCAODC_12040 | glyA | serine hydroxymethyltransferase | — | — |
| Escherichia coli ECOR27 | 0.81 | NOLOHH_04135 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | 0.79 | NOLOHH_13185 | glyA | serine hydroxymethyltransferase | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.81 | OHPLBJKB_03791 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.79 | OHPLBJKB_01156 | | Serine hydroxymethyltransferase | low | > 74 |
| Escherichia coli ECRC98 | 0.81 | JDDGAC_15515 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | 0.79 | JDDGAC_25175 | glyA | serine hydroxymethyltransferase | — | — |
| Escherichia coli ECRC102 | 0.81 | NIAGMN_09725 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | 0.79 | NIAGMN_19280 | glyA | serine hydroxymethyltransferase | low | > 80 |
| Escherichia coli ECRC99 | 0.81 | KEDOAH_16280 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | 0.79 | KEDOAH_06710 | glyA | serine hydroxymethyltransferase | — | — |
| Escherichia coli ECRC100 | 0.81 | OKFHMN_11875 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | 0.79 | OKFHMN_21510 | glyA | serine hydroxymethyltransferase | low | > 79 |
| Escherichia fergusonii Becca | 0.81 | EFB2_04290 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.79 | EFB2_01345 | | Serine hydroxymethyltransferase | — | — |
| Escherichia coli Nissle 1917 | 0.81 | ECOLIN_RS24615 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.79 | ECOLIN_RS14440 | | serine hydroxymethyltransferase | — | — |
| Escherichia coli BW25113 | 0.81 | b4243 | yjgF | orf, hypothetical protein (VIMSS) | 0.79 | b2551 | glyA | serine hydroxymethyltransferase (NCBI) | — | — |
| Escherichia coli ECOR38 | 0.81 | HEPCGN_10070 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | 0.79 | HEPCGN_20655 | glyA | serine hydroxymethyltransferase | low | > 88 |
| Enterobacter sp. TBS_079 | 0.79 | MPMX20_00542 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.79 | MPMX20_03420 | | Serine hydroxymethyltransferase | — | — |
| Pantoea sp. MT58 | 0.78 | IAI47_16870 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.81 | IAI47_04960 | | serine hydroxymethyltransferase | — | — |
| Klebsiella pneumoniae MRSN742743 | 0.78 | GJGHJB_04488 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | 0.79 | GJGHJB_01235 | glyA | Serine hydroxymethyltransferase | — | — |
| Klebsiella michiganensis M5al | 0.78 | BWI76_RS02985 | | reactive intermediate/imine deaminase | 0.79 | BWI76_RS21225 | | serine hydroxymethyltransferase | — | — |
| Klebsiella pneumoniae MKP103 | 0.78 | KDGMDA_11455 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.79 | KDGMDA_28355 | | Serine hydroxymethyltransferase | low | > 94 |
| Enterobacter asburiae PDN3 | 0.77 | EX28DRAFT_3444 | | reactive intermediate/imine deaminase | 0.79 | EX28DRAFT_0099 | | Glycine/serine hydroxymethyltransferase | — | — |
| Pantoea agglomerans CFBP13505 P0401 | 0.77 | PagCFBP13516_RS17090 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | 0.81 | PagCFBP13516_RS05250 | glyA | serine hydroxymethyltransferase | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.76 | GFF928 | | Endoribonuclease L-PSP | 0.79 | GFF2447 | | Serine hydroxymethyltransferase (EC 2.1.2.1) | — | — |
| Dickeya dianthicola ME23 | 0.75 | DZA65_RS01960 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.81 | DZA65_RS16775 | | serine hydroxymethyltransferase | — | — |
| Dickeya dianthicola 67-19 | 0.74 | HGI48_RS01890 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.81 | HGI48_RS15700 | | serine hydroxymethyltransferase | — | — |
| Dickeya dadantii 3937 | 0.74 | DDA3937_RS01915 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.81 | DDA3937_RS15600 | | serine hydroxymethyltransferase | — | — |
| Erwinia amylovora T8 | 0.74 | OLJFJH_07320 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.79 | OLJFJH_10340 | | Serine hydroxymethyltransferase | — | — |
| Rahnella sp. WP5 | 0.74 | EX31_RS12775 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.80 | EX31_RS20585 | | serine hydroxymethyltransferase | — | — |
| Erwinia tracheiphila HP pepo 2.2 | 0.73 | IJEDHG_14050 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | 0.80 | IJEDHG_02915 | | Serine hydroxymethyltransferase 1 | — | — |
| Erwinia tracheiphila SCR3 | 0.73 | LU632_RS20960 | ridA | 2-iminobutanoate/2-iminopropanoate deaminase | 0.80 | LU632_RS17915 | | serine hydroxymethyltransferase | — | — |
| Pectobacterium carotovorum WPP14 | 0.72 | HER17_RS19520 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.81 | HER17_RS05950 | | serine hydroxymethyltransferase | — | — |
| Serratia liquefaciens MT49 | 0.69 | IAI46_02265 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.81 | IAI46_19395 | | serine hydroxymethyltransferase | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.50 | BT1336 | | putative translation initiation inhibitor (NCBI ptt file) | 0.53 | BT0738 | | serine hydroxymethyltransferase (NCBI ptt file) | 0.63 | 44 |
| Bacteroides ovatus ATCC 8483 | 0.50 | BACOVA_00589 | | putative endoribonuclease L-PSP | 0.53 | BACOVA_02446 | | glycine hydroxymethyltransferase | low | > 96 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.50 | Xcc-8004.1205.1 | | hypothetical protein | 0.71 | Xcc-8004.4398.1 | | Serine hydroxymethyltransferase (EC 2.1.2.1) | 0.67 | 38 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.49 | DVU2203 | | endoribonuclease, L-PSP family (TIGR) | 0.56 | DVU1203 | glyA | serine hydroxymethyltransferase (TIGR) | — | — |
| Cellulophaga baltica 18 | 0.48 | M666_RS12150 | | RidA family protein | 0.54 | M666_RS14985 | | serine hydroxymethyltransferase | low | > 67 |
| Bacteroides stercoris CC31F | 0.48 | HMPREF1181_RS10885 | | RidA family protein | 0.53 | HMPREF1181_RS15010 | | serine hydroxymethyltransferase | low | > 56 |
| Phocaeicola vulgatus CL09T03C04 | 0.48 | HMPREF1058_RS18400 | | RidA family protein | 0.54 | HMPREF1058_RS03800 | | serine hydroxymethyltransferase | 0.45 | 60 |
| Phocaeicola dorei CL03T12C01 | 0.47 | ABI39_RS14715 | | RidA family protein | 0.54 | ABI39_RS17420 | | serine hydroxymethyltransferase | low | > 72 |
| Lysobacter sp. OAE881 | 0.47 | ABIE51_RS17260 | | RidA family protein | 0.71 | ABIE51_RS04620 | | serine hydroxymethyltransferase | low | > 62 |
| Methylophilus sp. DMC18 | 0.46 | GFF1301 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.64 | GFF72 | | Serine hydroxymethyltransferase | — | — |
| Parabacteroides merdae CL09T00C40 | 0.45 | HMPREF1078_RS02020 | | RidA family protein | 0.53 | HMPREF1078_RS02145 | | serine hydroxymethyltransferase | low | > 61 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS11845 | | RidA family protein | 0.72 | ABZR86_RS10715 | | serine hydroxymethyltransferase | 0.78 | 35 |
| Pseudomonas fluorescens FW300-N2E2 | 0.44 | Pf6N2E2_4360 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | 0.75 | Pf6N2E2_5082 | | Serine hydroxymethyltransferase (EC 2.1.2.1) | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.43 | CA265_RS22825 | | reactive intermediate/imine deaminase | 0.50 | CA265_RS19165 | | serine hydroxymethyltransferase | 0.83 | 41 |
| Pseudomonas sp. DMC3 | 0.43 | GFF420 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.74 | GFF3963 | | Serine hydroxymethyltransferase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.43 | Pf1N1B4_2112 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | 0.74 | Pf1N1B4_2778 | | Serine hydroxymethyltransferase (EC 2.1.2.1) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.43 | AO356_12475 | | reactive intermediate/imine deaminase | 0.74 | AO356_15725 | | serine hydroxymethyltransferase | — | — |
| Pseudomonas aeruginosa MRSN321 | 0.43 | PFGADD_05590 | ridA | RidA family protein | 0.74 | PFGADD_04813 | glyA3 | Serine hydroxymethyltransferase 3 | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.43 | Echvi_1327 | | endoribonuclease L-PSP, putative | 0.51 | Echvi_1188 | | Glycine/serine hydroxymethyltransferase | low | > 79 |
| Pseudomonas fluorescens GW456-L13 | 0.43 | PfGW456L13_779 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | 0.74 | PfGW456L13_1451 | | Serine hydroxymethyltransferase (EC 2.1.2.1) | — | — |
| Pseudomonas aeruginosa PUPa3 | 0.43 | NPBIFN_05666 | ridA | RidA family protein | 0.74 | NPBIFN_04874 | glyA3 | Serine hydroxymethyltransferase 3 | — | — |
| Pseudomonas sp. SVBP6 | 0.43 | COO64_RS01560 | | RidA family protein | 0.74 | COO64_RS02995 | glyA | serine hydroxymethyltransferase | — | — |
| Pseudomonas aeruginosa PA14 | 0.43 | IKLFDK_26760 | | reactive intermediate/imine deaminase | 0.73 | IKLFDK_00500 | | Serine hydroxymethyltransferase 3 | — | — |
| Marinobacter adhaerens HP15 | 0.43 | HP15_306 | | YjgF-like protein | 0.74 | HP15_489 | | glycine hydroxymethyltransferase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.43 | AO353_09285 | | reactive intermediate/imine deaminase | 0.74 | AO353_14020 | | serine hydroxymethyltransferase | — | — |
| Pseudomonas putida KT2440 | 0.42 | PP_5303 | | aminoacrylate/iminopropionate hydrolase/deaminase | 0.74 | PP_0671 | | serine hydroxymethyltransferase | — | — |
| Pseudomonas sp. RS175 | 0.42 | PFR28_04425 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.75 | PFR28_03786 | | Serine hydroxymethyltransferase | — | — |
| Pseudomonas fluorescens SBW25 | 0.42 | PFLU_RS29515 | | RidA family protein | 0.74 | PFLU_RS26195 | | serine hydroxymethyltransferase | — | — |
| Pseudomonas sp. FW215-L2 | 0.42 | GFF1160 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.75 | GFF5581 | | Serine hydroxymethyltransferase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.42 | Psyr_0208 | | endoribonuclease L-PSP | 0.75 | Psyr_4270 | | serine hydroxymethyltransferase | 0.47 | 72 |
| Pseudomonas simiae WCS417 | 0.42 | PS417_27835 | | endoribonuclease | 0.74 | PS417_24280 | | serine hydroxymethyltransferase | — | — |
| Pseudomonas lactucae CFBP13502 | 0.42 | GEMAOFIL_00035 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.74 | GEMAOFIL_05008 | | Serine hydroxymethyltransferase | — | — |
| Pseudomonas protegens RBAN4 | 0.42 | FABNJH_30590 | ridA | Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family | 0.74 | FABNJH_27010 | glyA2 | Serine hydroxymethyltransferase 2 | — | — |
| Pseudomonas orientalis W4I3 | 0.42 | QF045_RS02190 | | RidA family protein | 0.75 | QF045_RS26575 | | serine hydroxymethyltransferase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.42 | Psyr_0208 | | endoribonuclease L-PSP | 0.75 | Psyr_4270 | | serine hydroxymethyltransferase | low | > 86 |
| Pseudomonas fluorescens SBW25-INTG | 0.42 | PFLU_RS29515 | | RidA family protein | 0.74 | PFLU_RS26195 | | serine hydroxymethyltransferase | — | — |
| Acinetobacter baumannii LAC-4 | 0.42 | RR41_RS01650 | | RidA family protein | 0.70 | RR41_RS06055 | | serine hydroxymethyltransferase | — | — |
| Pseudomonas segetis P6 | 0.42 | ACVTMO_RS00185 | | RidA family protein | 0.74 | ACVTMO_RS19725 | glyA | serine hydroxymethyltransferase | — | — |
| Pseudomonas sp. BP01 | 0.42 | JOY50_RS08980 | | RidA family protein | 0.74 | JOY50_RS24625 | glyA | serine hydroxymethyltransferase | — | — |
| Rhodanobacter denitrificans MT42 | 0.41 | LRK55_RS11525 | | RidA family protein | 0.72 | LRK55_RS04400 | | serine hydroxymethyltransferase | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.41 | LRK54_RS11800 | | RidA family protein | 0.72 | LRK54_RS04625 | | serine hydroxymethyltransferase | 0.62 | 10 |
| Rhodanobacter sp. FW510-T8 | 0.41 | OKGIIK_12095 | ridA | reactive intermediate/imine deaminase | 0.72 | OKGIIK_11440 | glyA | serine hydroxymethyltransferase | 0.73 | 50 |
| Pseudomonas stutzeri RCH2 | 0.41 | Psest_3818 | | endoribonuclease L-PSP, putative | 0.74 | Psest_3404 | | Glycine/serine hydroxymethyltransferase | — | — |
| Shewanella sp. ANA-3 | 0.41 | Shewana3_2971 | | putative endoribonuclease L-PSP (RefSeq) | 0.83 | Shewana3_1094 | glyA | serine hydroxymethyltransferase (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.41 | Shew_3500 | | putative endoribonuclease L-PSP (RefSeq) | 0.81 | Shew_1185 | glyA | serine hydroxymethyltransferase (RefSeq) | 0.74 | 26 |
| Rhodanobacter sp000427505 FW510-R12 | 0.40 | LRK53_RS16740 | | RidA family protein | 0.72 | LRK53_RS05390 | | serine hydroxymethyltransferase | 0.74 | 27 |
| Acinetobacter radioresistens SK82 | 0.40 | MPMX26_02797 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.71 | MPMX26_02049 | | Serine hydroxymethyltransferase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.40 | QEN71_RS41190 | | RidA family protein | 0.70 | QEN71_RS33600 | | serine hydroxymethyltransferase | — | — |
| Pseudomonas sp. S08-1 | 0.40 | OH686_13545 | | RidA/YER057c/UK114 superfamily protein | 0.74 | OH686_16230 | | Serine hydroxymethyltransferase | — | — |
| Shewanella oneidensis MR-1 | 0.39 | SO1404 | | endoribonuclease L-PSP, putative (NCBI ptt file) | 0.83 | SO3471 | glyA | serine hydroxymethyltransferase (NCBI ptt file) | low | > 76 |
| Shewanella amazonensis SB2B | 0.39 | Sama_0263 | | YjgF-like protein (RefSeq) | 0.82 | Sama_1014 | glyA | serine hydroxymethyltransferase (RefSeq) | 0.72 | 7 |
| Castellaniella sp019104865 MT123 | 0.39 | ABCV34_RS03565 | | Rid family detoxifying hydrolase | 0.69 | ABCV34_RS06400 | | serine hydroxymethyltransferase | — | — |
| Kangiella aquimarina DSM 16071 | 0.39 | B158DRAFT_0573 | | endoribonuclease L-PSP, putative | 0.72 | B158DRAFT_1908 | | Glycine/serine hydroxymethyltransferase | low | > 40 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.38 | CA264_17590 | | RidA family protein | 0.50 | CA264_17045 | | serine hydroxymethyltransferase | low | > 74 |
| Alteromonas macleodii MIT1002 | 0.37 | MIT1002_00109 | | Putative reactive intermediate deaminase TdcF | 0.73 | MIT1002_02702 | | Serine hydroxymethyltransferase | low | > 70 |
| Dechlorosoma suillum PS | 0.37 | Dsui_0312 | | endoribonuclease L-PSP, putative | 0.64 | Dsui_1265 | | glycine/serine hydroxymethyltransferase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.34 | RALBFv3_RS20925 | | endoribonuclease L-PSP | 0.62 | RALBFv3_RS12895 | | serine hydroxymethyltransferase | — | — |
| Ralstonia solanacearum UW163 | 0.34 | UW163_RS22060 | | endoribonuclease L-PSP | 0.62 | UW163_RS00670 | | serine hydroxymethyltransferase | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.34 | DvMF_1512 | | endoribonuclease L-PSP (RefSeq) | 0.57 | DvMF_3097 | glyA | serine hydroxymethyltransferase (RefSeq) | — | — |
| Variovorax sp. SCN45 | 0.31 | GFF6707 | | RidA/YER057c/UK114 superfamily protein | 0.62 | GFF560 | | Serine hydroxymethyltransferase (EC 2.1.2.1) | — | — |
| Variovorax sp. OAS795 | 0.31 | ABID97_RS22895 | | RidA family protein | 0.62 | ABID97_RS17890 | | serine hydroxymethyltransferase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.29 | RR42_RS30085 | | hypothetical protein | 0.62 | RR42_RS15485 | | serine hydroxymethyltransferase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.27 | GFF3622 | | Bona fide RidA/YjgF/TdcF/RutC subgroup | 0.62 | GFF5152 | | Serine hydroxymethyltransferase (EC 2.1.2.1) | — | — |
| Paraburkholderia graminis OAS925 | 0.26 | ABIE53_004706 | | 2-iminobutanoate/2-iminopropanoate deaminase | 0.63 | ABIE53_000888 | | glycine hydroxymethyltransferase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.25 | H281DRAFT_03549 | | reactive intermediate/imine deaminase | 0.63 | H281DRAFT_04726 | | serine hydroxymethyltransferase | — | — |
Not shown: 10 genomes with orthologs for CSW01_12735 only; 7 genomes with orthologs for CSW01_04820 only