Conservation of cofitness between CSW01_03410 and CSW01_04820 in Vibrio cholerae E7946 ATCC 55056

90 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03410 polyribonucleotide nucleotidyltransferase 1.0 CSW01_04820 serine hydroxymethyltransferase 0.81 14
Pantoea sp. MT58 0.78 IAI47_17005 polyribonucleotide nucleotidyltransferase 0.81 IAI47_04960 serine hydroxymethyltransferase — —
Klebsiella michiganensis M5al 0.77 BWI76_RS25065 polyribonucleotide nucleotidyltransferase 0.79 BWI76_RS21225 serine hydroxymethyltransferase — —
Dickeya dadantii 3937 0.77 DDA3937_RS03090 polyribonucleotide nucleotidyltransferase 0.81 DDA3937_RS15600 serine hydroxymethyltransferase — —
Enterobacter asburiae PDN3 0.77 EX28DRAFT_3213 polyribonucleotide nucleotidyltransferase 0.79 EX28DRAFT_0099 Glycine/serine hydroxymethyltransferase — —
Dickeya dianthicola 67-19 0.77 HGI48_RS03260 polyribonucleotide nucleotidyltransferase 0.81 HGI48_RS15700 serine hydroxymethyltransferase — —
Dickeya dianthicola ME23 0.77 DZA65_RS03255 polyribonucleotide nucleotidyltransferase 0.81 DZA65_RS16775 serine hydroxymethyltransferase — —
Escherichia coli BW25113 0.77 b3164 pnp polynucleotide phosphorylase/polyadenylase (RefSeq) 0.79 b2551 glyA serine hydroxymethyltransferase (NCBI) — —
Escherichia coli BL21 0.77 ECD_03031 polynucleotide phosphorylase/polyadenylase 0.79 ECD_02443 serine hydroxymethyltransferase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.77 OHPLBJKB_00536 Polyribonucleotide nucleotidyltransferase 0.79 OHPLBJKB_01156 Serine hydroxymethyltransferase low > 73
Enterobacter sp. TBS_079 0.77 MPMX20_04068 Polyribonucleotide nucleotidyltransferase 0.79 MPMX20_03420 Serine hydroxymethyltransferase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF1502 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.79 GFF2447 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Escherichia coli ECRC100 0.77 OKFHMN_18140 pnp polyribonucleotide nucleotidyltransferase 0.79 OKFHMN_21510 glyA serine hydroxymethyltransferase low > 80
Escherichia coli ECRC101 0.77 MCAODC_08660 pnp polyribonucleotide nucleotidyltransferase 0.79 MCAODC_12040 glyA serine hydroxymethyltransferase low > 87
Escherichia coli ECRC102 0.77 NIAGMN_15900 pnp polyribonucleotide nucleotidyltransferase 0.79 NIAGMN_19280 glyA serine hydroxymethyltransferase — —
Escherichia coli ECRC99 0.77 KEDOAH_10010 pnp polyribonucleotide nucleotidyltransferase 0.79 KEDOAH_06710 glyA serine hydroxymethyltransferase — —
Escherichia coli ECOR38 0.77 HEPCGN_17015 pnp polyribonucleotide nucleotidyltransferase 0.79 HEPCGN_20655 glyA serine hydroxymethyltransferase — —
Escherichia coli ECRC62 0.77 BNILDI_01595 pnp polyribonucleotide nucleotidyltransferase 0.79 BNILDI_11985 glyA serine hydroxymethyltransferase low > 75
Escherichia coli ECOR27 0.77 NOLOHH_09940 pnp polyribonucleotide nucleotidyltransferase 0.79 NOLOHH_13185 glyA serine hydroxymethyltransferase low > 75
Escherichia coli ECRC98 0.77 JDDGAC_21765 pnp polyribonucleotide nucleotidyltransferase 0.79 JDDGAC_25175 glyA serine hydroxymethyltransferase — —
Escherichia coli Nissle 1917 0.77 ECOLIN_RS18175 polyribonucleotide nucleotidyltransferase 0.79 ECOLIN_RS14440 serine hydroxymethyltransferase — —
Escherichia fergusonii Becca 0.77 EFB2_00659 Polyribonucleotide nucleotidyltransferase 0.79 EFB2_01345 Serine hydroxymethyltransferase — —
Erwinia tracheiphila SCR3 0.77 LU632_RS21040 pnp polyribonucleotide nucleotidyltransferase 0.80 LU632_RS17915 serine hydroxymethyltransferase — —
Rahnella sp. WP5 0.76 EX31_RS08520 polyribonucleotide nucleotidyltransferase 0.80 EX31_RS20585 serine hydroxymethyltransferase — —
Erwinia amylovora T8 0.76 OLJFJH_07265 polyribonucleotide nucleotidyltransferase 0.79 OLJFJH_10340 Serine hydroxymethyltransferase — —
Pectobacterium carotovorum WPP14 0.76 HER17_RS18190 polyribonucleotide nucleotidyltransferase 0.81 HER17_RS05950 serine hydroxymethyltransferase — —
Serratia liquefaciens MT49 0.76 IAI46_01955 polyribonucleotide nucleotidyltransferase 0.81 IAI46_19395 serine hydroxymethyltransferase — —
Shewanella loihica PV-4 0.74 Shew_2822 polynucleotide phosphorylase/polyadenylase (RefSeq) 0.81 Shew_1185 glyA serine hydroxymethyltransferase (RefSeq) — —
Shewanella amazonensis SB2B 0.73 Sama_0966 polynucleotide phosphorylase/polyadenylase (RefSeq) 0.82 Sama_1014 glyA serine hydroxymethyltransferase (RefSeq) — —
Alteromonas macleodii MIT1002 0.73 MIT1002_01888 Polyribonucleotide nucleotidyltransferase 0.73 MIT1002_02702 Serine hydroxymethyltransferase — —
Shewanella oneidensis MR-1 0.72 SO1209 pnp polyribonucleotide nucleotidyltransferase (NCBI ptt file) 0.83 SO3471 glyA serine hydroxymethyltransferase (NCBI ptt file) — —
Shewanella sp. ANA-3 0.72 Shewana3_1035 polynucleotide phosphorylase/polyadenylase (RefSeq) 0.83 Shewana3_1094 glyA serine hydroxymethyltransferase (RefSeq) — —
Kangiella aquimarina DSM 16071 0.68 B158DRAFT_0104 polyribonucleotide nucleotidyltransferase 0.72 B158DRAFT_1908 Glycine/serine hydroxymethyltransferase — —
Dechlorosoma suillum PS 0.66 Dsui_2718 polyribonucleotide nucleotidyltransferase 0.64 Dsui_1265 glycine/serine hydroxymethyltransferase — —
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS08755 polynucleotide phosphorylase/polyadenylase 0.62 HSERO_RS06140 serine hydroxymethyltransferase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.64 GFF3677 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.62 GFF5152 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Acidovorax sp. GW101-3H11 0.64 Ac3H11_1456 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.63 Ac3H11_2921 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Paraburkholderia graminis OAS925 0.63 ABIE53_001586 polyribonucleotide nucleotidyltransferase 0.63 ABIE53_000888 glycine hydroxymethyltransferase — —
Variovorax sp. SCN45 0.63 GFF4746 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.62 GFF560 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Dyella japonica UNC79MFTsu3.2 0.63 ABZR86_RS06005 polyribonucleotide nucleotidyltransferase 0.72 ABZR86_RS10715 serine hydroxymethyltransferase — —
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_04562 polyribonucleotide nucleotidyltransferase 0.63 H281DRAFT_04726 serine hydroxymethyltransferase — —
Pseudomonas aeruginosa PA14 0.63 IKLFDK_29900 polyribonucleotide nucleotidyltransferase 0.73 IKLFDK_00500 Serine hydroxymethyltransferase 3 — —
Rhodanobacter sp000427505 FW510-R12 0.63 LRK53_RS09090 polyribonucleotide nucleotidyltransferase 0.72 LRK53_RS05390 serine hydroxymethyltransferase low > 60
Rhodanobacter denitrificans FW104-10B01 0.63 LRK54_RS01025 polyribonucleotide nucleotidyltransferase 0.72 LRK54_RS04625 serine hydroxymethyltransferase — —
Rhodanobacter denitrificans MT42 0.63 LRK55_RS00800 polyribonucleotide nucleotidyltransferase 0.72 LRK55_RS04400 serine hydroxymethyltransferase — —
Variovorax sp. OAS795 0.63 ABID97_RS20520 polyribonucleotide nucleotidyltransferase 0.62 ABID97_RS17890 serine hydroxymethyltransferase — —
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS06600 polynucleotide phosphorylase/polyadenylase 0.63 BPHYT_RS03725 serine hydroxymethyltransferase low > 109
Rhodanobacter sp. FW510-T8 0.62 OKGIIK_05870 pnp polyribonucleotide nucleotidyltransferase 0.72 OKGIIK_11440 glyA serine hydroxymethyltransferase — —
Xanthomonas campestris pv. campestris strain 8004 0.62 Xcc-8004.2006.1 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.71 Xcc-8004.4398.1 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Paraburkholderia sabiae LMG 24235 0.62 QEN71_RS24175 polyribonucleotide nucleotidyltransferase 0.70 QEN71_RS33600 serine hydroxymethyltransferase — —
Marinobacter adhaerens HP15 0.62 HP15_3063 polynucleotide phosphorylase/polyadenylase 0.74 HP15_489 glycine hydroxymethyltransferase — —
Pseudomonas sp. S08-1 0.62 OH686_17165 polyribonucleotide nucleotidyltransferase 0.74 OH686_16230 Serine hydroxymethyltransferase — —
Methylophilus sp. DMC18 0.62 GFF2832 Polyribonucleotide nucleotidyltransferase 0.64 GFF72 Serine hydroxymethyltransferase — —
Pseudomonas stutzeri RCH2 0.61 Psest_0986 polyribonucleotide nucleotidyltransferase 0.74 Psest_3404 Glycine/serine hydroxymethyltransferase — —
Pseudomonas sp. SVBP6 0.61 COO64_RS15150 pnp polyribonucleotide nucleotidyltransferase 0.74 COO64_RS02995 glyA serine hydroxymethyltransferase — —
Pseudomonas fluorescens FW300-N2C3 0.61 AO356_07390 polyribonucleotide nucleotidyltransferase 0.74 AO356_15725 serine hydroxymethyltransferase — —
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_3349 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.75 Pf6N2E2_5082 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Pseudomonas sp. BP01 0.61 JOY50_RS26855 pnp polyribonucleotide nucleotidyltransferase 0.74 JOY50_RS24625 glyA serine hydroxymethyltransferase — —
Ralstonia solanacearum GMI1000 0.61 RS_RS10375 polyribonucleotide nucleotidyltransferase 0.62 RS_RS03670 serine hydroxymethyltransferase — —
Cupriavidus basilensis FW507-4G11 0.61 RR42_RS05485 polynucleotide phosphorylase/polyadenylase 0.62 RR42_RS15485 serine hydroxymethyltransferase — —
Pseudomonas putida KT2440 0.61 PP_4708 Polyribonucleotide nucleotidyltransferase 0.74 PP_0671 serine hydroxymethyltransferase — —
Ralstonia solanacearum IBSBF1503 0.61 RALBFv3_RS03005 polyribonucleotide nucleotidyltransferase 0.62 RALBFv3_RS12895 serine hydroxymethyltransferase — —
Ralstonia solanacearum UW163 0.61 UW163_RS10720 polyribonucleotide nucleotidyltransferase 0.62 UW163_RS00670 serine hydroxymethyltransferase — —
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_1156 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.74 Pf1N1B4_2778 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Pseudomonas sp. RS175 0.61 PFR28_00094 Polyribonucleotide nucleotidyltransferase 0.75 PFR28_03786 Serine hydroxymethyltransferase — —
Ralstonia solanacearum PSI07 0.61 RPSI07_RS14305 polyribonucleotide nucleotidyltransferase 0.62 RPSI07_RS20330 serine hydroxymethyltransferase low > 81
Pseudomonas syringae pv. syringae B728a ΔmexB 0.61 Psyr_4176 Polyribonucleotide nucleotidyltransferase 0.75 Psyr_4270 serine hydroxymethyltransferase — —
Lysobacter sp. OAE881 0.61 ABIE51_RS08415 polyribonucleotide nucleotidyltransferase 0.71 ABIE51_RS04620 serine hydroxymethyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.61 Psyr_4176 Polyribonucleotide nucleotidyltransferase 0.75 Psyr_4270 serine hydroxymethyltransferase — —
Ralstonia sp. UNC404CL21Col 0.61 ABZR87_RS14910 polyribonucleotide nucleotidyltransferase 0.62 ABZR87_RS08955 serine hydroxymethyltransferase — —
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_5084 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.74 PfGW456L13_1451 Serine hydroxymethyltransferase (EC 2.1.2.1) — —
Pseudomonas sp. DMC3 0.61 GFF4992 Polyribonucleotide nucleotidyltransferase 0.74 GFF3963 Serine hydroxymethyltransferase — —
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_05540 polyribonucleotide nucleotidyltransferase 0.74 AO353_14020 serine hydroxymethyltransferase — —
Castellaniella sp019104865 MT123 0.60 ABCV34_RS01240 polyribonucleotide nucleotidyltransferase 0.69 ABCV34_RS06400 serine hydroxymethyltransferase — —
Pseudomonas simiae WCS417 0.59 PS417_23950 polynucleotide phosphorylase/polyadenylase 0.74 PS417_24280 serine hydroxymethyltransferase — —
Pseudomonas fluorescens SBW25 0.59 PFLU_RS25790 polyribonucleotide nucleotidyltransferase 0.74 PFLU_RS26195 serine hydroxymethyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS25790 polyribonucleotide nucleotidyltransferase 0.74 PFLU_RS26195 serine hydroxymethyltransferase — —
Acinetobacter radioresistens SK82 0.58 MPMX26_00275 Polyribonucleotide nucleotidyltransferase 0.71 MPMX26_02049 Serine hydroxymethyltransferase — —
Desulfovibrio vulgaris Miyazaki F 0.43 DvMF_2508 polynucleotide phosphorylase/polyadenylase (RefSeq) 0.57 DvMF_3097 glyA serine hydroxymethyltransferase (RefSeq) — —
Synechocystis sp000284455 PCC 6803 0.41 SGL_RS02295 polyribonucleotide nucleotidyltransferase 0.57 SGL_RS04690 serine hydroxymethyltransferase — —
Desulfovibrio vulgaris Hildenborough JW710 0.40 DVU0503 pnp polyribonucleotide nucleotidyltransferase (TIGR) 0.56 DVU1203 glyA serine hydroxymethyltransferase (TIGR) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.40 CA264_04880 polyribonucleotide nucleotidyltransferase 0.50 CA264_17045 serine hydroxymethyltransferase — —
Bacteroides thetaiotaomicron VPI-5482 0.40 BT2563 polyribonucleotide nucleotidyltransferase (NCBI ptt file) 0.53 BT0738 serine hydroxymethyltransferase (NCBI ptt file) — —
Phocaeicola vulgatus CL09T03C04 0.40 HMPREF1058_RS12555 polyribonucleotide nucleotidyltransferase 0.54 HMPREF1058_RS03800 serine hydroxymethyltransferase — —
Phocaeicola dorei CL03T12C01 0.40 ABI39_RS04155 polyribonucleotide nucleotidyltransferase 0.54 ABI39_RS17420 serine hydroxymethyltransferase — —
Bacteroides ovatus ATCC 8483 0.40 BACOVA_01641 polyribonucleotide nucleotidyltransferase 0.53 BACOVA_02446 glycine hydroxymethyltransferase — —
Bacteroides stercoris CC31F 0.40 HMPREF1181_RS00815 polyribonucleotide nucleotidyltransferase 0.53 HMPREF1181_RS15010 serine hydroxymethyltransferase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.39 Echvi_3436 polyribonucleotide nucleotidyltransferase 0.51 Echvi_1188 Glycine/serine hydroxymethyltransferase — —
Pedobacter sp. GW460-11-11-14-LB5 0.39 CA265_RS08985 polyribonucleotide nucleotidyltransferase 0.50 CA265_RS19165 serine hydroxymethyltransferase — —
Parabacteroides merdae CL09T00C40 0.38 HMPREF1078_RS17715 polyribonucleotide nucleotidyltransferase 0.53 HMPREF1078_RS02145 serine hydroxymethyltransferase — —
Cellulophaga baltica 18 0.36 M666_RS08550 polyribonucleotide nucleotidyltransferase 0.54 M666_RS14985 serine hydroxymethyltransferase low > 67

Not shown: 20 genomes with orthologs for CSW01_03410 only; 0 genomes with orthologs for CSW01_04820 only