| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_02215 | | carbon-nitrogen hydrolase family protein | 1.0 | CSW01_03695 | | ribosomal large subunit pseudouridine synthase D | 0.67 | 19 |
| Serratia liquefaciens MT49 | 0.49 | IAI46_22690 | | carbon-nitrogen hydrolase family protein | 0.70 | IAI46_03985 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 87 |
| Pseudomonas sp. S08-1 | 0.45 | OH686_08585 | | Uncharacterized subgroup of the nitrilase superfamily | 0.53 | OH686_16410 | | LSU rRNA pseudouridine(1911/1915/1917) synthase | low | > 80 |
| Pseudomonas aeruginosa PA14 | 0.43 | IKLFDK_01705 | | carbon-nitrogen hydrolase | 0.51 | IKLFDK_00810 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 98 |
| Pseudomonas aeruginosa PUPa3 | 0.43 | DQ20_RS56560 | | carbon-nitrogen hydrolase family protein | 0.51 | DQ20_RS56195 | rluD;go_function=RNA | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 101 |
| Pseudomonas aeruginosa MRSN321 | 0.43 | DY961_RS24100 | | carbon-nitrogen hydrolase family protein | 0.51 | DY961_RS23730 | rluD;go_function=RNA | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 100 |
| Shewanella loihica PV-4 | 0.43 | Shew_0409 | | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (RefSeq) | 0.60 | Shew_2950 | | RluA family pseudouridine synthase (RefSeq) | low | > 60 |
| Pseudomonas segetis P6 | 0.42 | MPMX49_03866 | | Deaminated glutathione amidase | 0.53 | MPMX49_03922 | | Ribosomal large subunit pseudouridine synthase D | low | > 75 |
| Shewanella sp. ANA-3 | 0.42 | Shewana3_3642 | | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (RefSeq) | 0.60 | Shewana3_3171 | | ribosomal large subunit pseudouridine synthase D (RefSeq) | low | > 73 |
| Pseudomonas sp. SVBP6 | 0.42 | COO64_RS04220 | | carbon-nitrogen hydrolase family protein | 0.54 | COO64_RS11055 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 93 |
| Pseudomonas fluorescens GW456-L13 | 0.42 | PfGW456L13_5027 | | FIG003879: Predicted amidohydrolase / Omega amidase (Nit2 homolog) | 0.54 | PfGW456L13_1493 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.42 | Psyr_4157 | | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase | 0.54 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.42 | Psyr_4157 | | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase | 0.54 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | low | > 86 |
| Pseudomonas sp. DMC3 | 0.42 | GFF1815 | | Deaminated glutathione amidase | 0.54 | GFF4004 | | Ribosomal large subunit pseudouridine synthase D | low | > 89 |
| Pseudomonas simiae WCS417 | 0.42 | PS417_04280 | | carbon-nitrogen hydrolase | 0.54 | PS417_03820 | | ribosomal large subunit pseudouridine synthase D | — | — |
| Pseudomonas sp. RS175 | 0.42 | PFR28_00160 | | Deaminated glutathione amidase | 0.54 | PFR28_03748 | | Ribosomal large subunit pseudouridine synthase D | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.41 | PFLU_RS04335 | | carbon-nitrogen hydrolase family protein | 0.54 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.41 | PFLU_RS04335 | | carbon-nitrogen hydrolase family protein | 0.54 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.41 | AO353_05220 | | carbon-nitrogen hydrolase | 0.54 | AO353_14220 | | ribosomal large subunit pseudouridine synthase D | 0.39 | 25 |
| Shewanella amazonensis SB2B | 0.41 | Sama_0473 | | carbon-nitrogen family hydrolase (RefSeq) | 0.59 | Sama_2605 | | pseudouridylate synthase (RefSeq) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.41 | AO356_07100 | | carbon-nitrogen hydrolase | 0.55 | AO356_15925 | | ribosomal large subunit pseudouridine synthase D | 0.35 | 8 |
| Pseudomonas fluorescens FW300-N2E2 | 0.41 | Pf6N2E2_3281 | | FIG003879: Predicted amidohydrolase / Omega amidase (Nit2 homolog) | 0.54 | Pf6N2E2_5127 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Pseudomonas lactucae CFBP13502 | 0.41 | GEMAOFIL_01061 | | Deaminated glutathione amidase | 0.54 | GEMAOFIL_00969 | | Ribosomal large subunit pseudouridine synthase D | low | > 96 |
| Pseudomonas fluorescens FW300-N1B4 | 0.41 | Pf1N1B4_1093 | | FIG003879: Predicted amidohydrolase / Omega amidase (Nit2 homolog) | 0.54 | Pf1N1B4_2822 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Pseudomonas putida KT2440 | 0.41 | PP_0939 | | Carbon-nitrogen hydrolase family protein | 0.53 | PP_0623 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | — | — |
| Pseudomonas orientalis W4I3 | 0.40 | QF045_RS07270 | | carbon-nitrogen hydrolase family protein | 0.54 | QF045_RS06805 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 93 |
| Pseudomonas sp. BP01 | 0.40 | JOY50_RS11065 | | carbon-nitrogen hydrolase family protein | 0.54 | JOY50_RS27130 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 84 |
| Azospirillum sp. SherDot2 | 0.40 | MPMX19_02429 | | Deaminated glutathione amidase | 0.33 | MPMX19_05442 | | Ribosomal large subunit pseudouridine synthase D | low | > 112 |
| Phaeobacter inhibens DSM 17395 | 0.39 | PGA1_c34700 | | putative carbon-nitrogen hydrolase | 0.32 | PGA1_c09000 | | ribosomal large subunit pseudouridine synthase D | low | > 62 |
| Marinobacter adhaerens HP15 | 0.38 | HP15_2449 | | nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase | 0.51 | HP15_527 | | pseudouridine synthase, RluA family | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.38 | MIT1002_00226 | | (R)-stereoselective amidase | 0.59 | MIT1002_02679 | | Ribosomal large subunit pseudouridine synthase D | low | > 70 |
| Dinoroseobacter shibae DFL-12 | 0.38 | Dshi_3506 | | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (RefSeq) | 0.28 | Dshi_2610 | | pseudouridine synthase, RluA family (RefSeq) | low | > 64 |
| Methylophilus sp. DMC18 | 0.37 | GFF381 | | Deaminated glutathione amidase | 0.45 | GFF1213 | | Ribosomal large subunit pseudouridine synthase D | low | > 43 |
| Sphingomonas koreensis DSMZ 15582 | 0.36 | Ga0059261_3603 | | Predicted amidohydrolase | 0.32 | Ga0059261_0664 | | pseudouridine synthase, RluA family | low | > 68 |
| Sinorhizobium meliloti 1021 | 0.36 | SMc02442 | | hydrolase | 0.33 | SMc00647 | | ribosomal large subunit pseudouridine synthase | low | > 103 |
| Herbaspirillum seropedicae SmR1 | 0.36 | HSERO_RS07150 | | apolipoprotein acyltransferase | 0.35 | HSERO_RS15070 | | ribosomal large subunit pseudouridine synthase D | low | > 78 |
| Rhodopseudomonas palustris CGA009 | 0.36 | TX73_003100 | | carbon-nitrogen hydrolase family protein | 0.33 | TX73_001905 | | RluA family pseudouridine synthase | low | > 86 |
| Ralstonia solanacearum GMI1000 | 0.36 | RS_RS13310 | | carbon-nitrogen hydrolase family protein | 0.39 | RS_RS08205 | | RluA family pseudouridine synthase | low | > 80 |
| Synechococcus elongatus PCC 7942 | 0.36 | Synpcc7942_2358 | | nitrilase-like | 0.29 | Synpcc7942_1112 | | ribosomal large subunit pseudouridine synthase D | low | > 38 |
| Synechocystis sp000284455 PCC 6803 | 0.36 | SGL_RS14360 | | carbon-nitrogen hydrolase family protein | 0.31 | SGL_RS11530 | | RluA family pseudouridine synthase | low | > 52 |
| Ralstonia solanacearum IBSBF1503 | 0.35 | RALBFv3_RS05450 | | carbon-nitrogen hydrolase family protein | 0.38 | RALBFv3_RS01520 | | RluA family pseudouridine synthase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.35 | UW163_RS08175 | | carbon-nitrogen hydrolase family protein | 0.38 | UW163_RS14830 | | RluA family pseudouridine synthase | — | — |
| Ralstonia solanacearum PSI07 | 0.35 | RPSI07_RS11855 | | carbon-nitrogen hydrolase family protein | 0.39 | RPSI07_RS15970 | | RluA family pseudouridine synthase | low | > 81 |
| Acinetobacter baumannii LAC-4 | 0.35 | RR41_RS15875 | | carbon-nitrogen hydrolase family protein | 0.49 | RR41_RS15070 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 55 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.35 | A4249_RS13565 | | carbon-nitrogen hydrolase family protein | 0.29 | A4249_RS10060 | | RluA family pseudouridine synthase | low | > 48 |
| Variovorax sp. SCN45 | 0.35 | GFF5445 | | FIG003879: Uncharacterized subgroup of the nitrilase superfamily | 0.30 | GFF988 | | LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) | low | > 127 |
| Caulobacter crescentus NA1000 Δfur | 0.35 | CCNA_00871 | | carbon-nitrogen hydrolase family protein | 0.31 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | low | > 67 |
| Caulobacter crescentus NA1000 | 0.35 | CCNA_00871 | | carbon-nitrogen hydrolase family protein | 0.31 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | low | > 66 |
| Variovorax sp. OAS795 | 0.35 | ABID97_RS02000 | | carbon-nitrogen hydrolase family protein | 0.28 | ABID97_RS14190 | | RluA family pseudouridine synthase | low | > 91 |
| Ralstonia sp. UNC404CL21Col | 0.35 | ABZR87_RS01100 | | carbon-nitrogen hydrolase family protein | 0.38 | ABZR87_RS13315 | | RluA family pseudouridine synthase | low | > 80 |
| Rhodospirillum rubrum S1H | 0.34 | Rru_A0739 | | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (NCBI) | 0.35 | Rru_A1111 | | Pseudouridine synthase, RluD (NCBI) | low | > 58 |
| Sphingobium sp. HT1-2 | 0.34 | GFF2532 | | FIG147869: Carbon-nitrogen hydrolase | 0.37 | GFF4062 | | LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) | low | > 95 |
| Agrobacterium fabrum C58 | 0.34 | Atu3510 | | amidohydrolase | 0.33 | Atu2443 | | ribosomal large subunit pseudouridine synthase, RluD subfamily | — | — |
| Rhizobium sp. OAE497 | 0.34 | ABIE40_RS17345 | | carbon-nitrogen hydrolase family protein | 0.36 | ABIE40_RS14790 | | RluA family pseudouridine synthase | low | > 107 |
| Magnetospirillum magneticum AMB-1 | 0.34 | AMB_RS08115 | | carbon-nitrogen hydrolase family protein | 0.30 | AMB_RS16095 | | RluA family pseudouridine synthase | low | > 64 |
| Acinetobacter radioresistens SK82 | 0.33 | MPMX26_00580 | | Deaminated glutathione amidase | 0.43 | MPMX26_00735 | | Ribosomal large subunit pseudouridine synthase D | low | > 36 |
| Xanthobacter sp. DMC5 | 0.33 | GFF102 | | Deaminated glutathione amidase | 0.36 | GFF2508 | | Ribosomal large subunit pseudouridine synthase D | — | — |
| Castellaniella sp019104865 MT123 | 0.33 | ABCV34_RS02585 | | carbon-nitrogen hydrolase family protein | 0.33 | ABCV34_RS01885 | | RluA family pseudouridine synthase | low | > 48 |
| Kangiella aquimarina DSM 16071 | 0.32 | B158DRAFT_2071 | | Predicted amidohydrolase | 0.53 | B158DRAFT_2532 | | Pseudouridylate synthases, 23S RNA-specific | low | > 40 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.31 | GFF2535 | | FIG003879: Predicted amidohydrolase | 0.35 | GFF4870 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.57 | 72 |
| Acidovorax sp. GW101-3H11 | 0.29 | Ac3H11_1207 | | FIG003879: Predicted amidohydrolase | 0.32 | Ac3H11_1787 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | low | > 79 |
| Pantoea agglomerans CFBP13505 P0401 | 0.20 | PagCFBP13505_RS03225 | | deaminated glutathione amidase | 0.70 | PagCFBP13505_RS16540 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 74 |
| Mycobacterium tuberculosis H37Rv | 0.20 | Rv0480c | | Possible amidohydrolase | 0.24 | Rv1540 | | Conserved hypothetical protein member of yabO/yceC/yfiI family | — | — |
| Klebsiella michiganensis M5al | 0.19 | BWI76_RS07990 | | carbon-nitrogen hydrolase | 0.69 | BWI76_RS21450 | | 23S rRNA pseudouridine(1911/1915/1917) synthase | — | — |
| Dickeya dianthicola 67-19 | 0.19 | HGI48_RS19475 | | deaminated glutathione amidase | 0.70 | HGI48_RS16235 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 71 |
| Erwinia amylovora T8 | 0.19 | OLJFJH_17270 | | deaminated glutathione amidase | 0.70 | OLJFJH_09725 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 58 |
| Klebsiella pneumoniae MKP103 | 0.19 | KDGMDA_16350 | | deaminated glutathione amidase | 0.70 | KDGMDA_02140 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 95 |
| Pantoea sp. MT58 | 0.19 | IAI47_14065 | | deaminated glutathione amidase | 0.70 | IAI47_04425 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.18 | LU632_RS16420 | | deaminated glutathione amidase | 0.68 | LU632_RS16945 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 73 |
| Dickeya dadantii 3937 | 0.18 | DDA3937_RS06130 | | deaminated glutathione amidase | 0.70 | DDA3937_RS16110 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 74 |
| Erwinia tracheiphila HP pepo 2.2 | 0.18 | IJEDHG_02515 | | deaminated glutathione amidase | 0.68 | IJEDHG_26870 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 61 |
| Dickeya dianthicola ME23 | 0.18 | DZA65_RS06520 | | deaminated glutathione amidase | 0.70 | DZA65_RS17330 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Enterobacter asburiae PDN3 | 0.18 | EX28DRAFT_2337 | | Predicted amidohydrolase | 0.70 | EX28DRAFT_2695 | | pseudouridine synthase, RluA family | low | > 76 |
| Rahnella sp. WP5 | 0.17 | EX31_RS23065 | | deaminated glutathione amidase | 0.69 | EX31_RS07570 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 89 |
| Enterobacter sp. TBS_079 | 0.17 | MPMX20_01285 | | Deaminated glutathione amidase | 0.70 | MPMX20_03463 | | Ribosomal large subunit pseudouridine synthase D | low | > 85 |
| Pectobacterium carotovorum WPP14 | 0.17 | HER17_RS17575 | | deaminated glutathione amidase | 0.71 | HER17_RS05400 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Phocaeicola vulgatus CL09T03C04 | 0.17 | HMPREF1058_RS04375 | | carbon-nitrogen hydrolase | 0.31 | HMPREF1058_RS08615 | | RluA family pseudouridine synthase | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.17 | ABI39_RS16695 | | carbon-nitrogen hydrolase | 0.31 | ABI39_RS02845 | | RluA family pseudouridine synthase | low | > 72 |
| Parabacteroides merdae CL09T00C40 | 0.16 | HMPREF1078_RS01170 | | carbon-nitrogen hydrolase | 0.28 | HMPREF1078_RS12640 | | RluA family pseudouridine synthase | low | > 61 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.16 | Xcc-8004.2374.1 | | N-carbamoylputrescine amidase (3.5.1.53) / Aliphatic amidase AmiE (EC 3.5.1.4) | 0.51 | Xcc-8004.1362.1 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.16 | BT0875 | | beta-ureidopropionase (NCBI ptt file) | 0.31 | BT3712 | | ribosomal large subunit pseudouridine synthase D (NCBI ptt file) | 0.41 | 12 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.15 | CA265_RS15465 | | acyltransferase | 0.28 | CA265_RS14415 | | pseudouridine synthase | — | — |
| Bacteroides stercoris CC31F | 0.15 | HMPREF1181_RS14235 | | carbon-nitrogen hydrolase | 0.31 | HMPREF1181_RS03250 | | RluA family pseudouridine synthase | low | > 56 |
| Bacteroides ovatus ATCC 8483 | 0.15 | BACOVA_02592 | | hydrolase, carbon-nitrogen family | 0.30 | BACOVA_03528 | | pseudouridine synthase, RluA family | 0.68 | 51 |
| Rhodanobacter sp000427505 FW510-R12 | 0.15 | LRK53_RS09305 | | amidohydrolase | 0.47 | LRK53_RS05045 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 59 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.15 | ABZR88_RS18075 | | carbon-nitrogen hydrolase | 0.29 | ABZR88_RS03985 | | RluA family pseudouridine synthase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.14 | LRK54_RS00825 | | amidohydrolase | 0.48 | LRK54_RS04965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.22 | 53 |
| Rhodanobacter denitrificans MT42 | 0.14 | LRK55_RS00600 | | amidohydrolase | 0.48 | LRK55_RS04745 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 63 |
| Lysobacter sp. OAE881 | 0.14 | ABIE51_RS09320 | | carbon-nitrogen hydrolase | 0.49 | ABIE51_RS04885 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Rhodanobacter sp. FW510-T8 | 0.14 | OKGIIK_06395 | nit2 | amidohydrolase | 0.46 | OKGIIK_01790 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 53 |
| Bosea sp. OAE506 | 0.14 | ABIE41_RS12325 | | N-carbamoyl-D-amino-acid hydrolase | 0.32 | ABIE41_RS05635 | | RluA family pseudouridine synthase | low | > 77 |
| Dyella japonica UNC79MFTsu3.2 | 0.13 | ABZR86_RS02765 | | carbon-nitrogen hydrolase | 0.48 | ABZR86_RS10965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.12 | Echvi_1887 | | Predicted amidohydrolase | 0.31 | Echvi_0642 | | pseudouridine synthase, RluA family | low | > 79 |
Not shown: 10 genomes with orthologs for CSW01_02215 only; 20 genomes with orthologs for CSW01_03695 only