Conservation of cofitness between CSW01_14320 and CSW01_02215 in Vibrio cholerae E7946 ATCC 55056

84 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_14320 deoxyribodipyrimidine photo-lyase 1.0 CSW01_02215 carbon-nitrogen hydrolase family protein 0.60 17
Enterobacter asburiae PDN3 0.47 EX28DRAFT_2278 Deoxyribodipyrimidine photolyase 0.18 EX28DRAFT_2337 Predicted amidohydrolase low > 76
Erwinia amylovora T8 0.47 OLJFJH_17015 deoxyribodipyrimidine photo-lyase 0.19 OLJFJH_17270 deaminated glutathione amidase low > 58
Serratia liquefaciens MT49 0.46 IAI46_06200 deoxyribodipyrimidine photo-lyase 0.49 IAI46_22690 carbon-nitrogen hydrolase family protein low > 86
Enterobacter sp. TBS_079 0.46 MPMX20_01343 Deoxyribodipyrimidine photo-lyase 0.17 MPMX20_01285 Deaminated glutathione amidase low > 85
Rahnella sp. WP5 0.45 EX31_RS23365 deoxyribodipyrimidine photo-lyase 0.17 EX31_RS23065 deaminated glutathione amidase low > 89
Dickeya dadantii 3937 0.45 DDA3937_RS06405 deoxyribodipyrimidine photo-lyase 0.18 DDA3937_RS06130 deaminated glutathione amidase low > 74
Erwinia tracheiphila HP pepo 2.2 0.45 IJEDHG_02210 phrB deoxyribodipyrimidine photo-lyase 0.18 IJEDHG_02515 deaminated glutathione amidase low > 61
Erwinia tracheiphila SCR3 0.45 LU632_RS16155 phrB deoxyribodipyrimidine photo-lyase 0.18 LU632_RS16420 deaminated glutathione amidase low > 74
Klebsiella michiganensis M5al 0.45 BWI76_RS08335 deoxyribodipyrimidine photo-lyase 0.19 BWI76_RS07990 carbon-nitrogen hydrolase — —
Dickeya dianthicola ME23 0.45 DZA65_RS06795 deoxyribodipyrimidine photo-lyase 0.18 DZA65_RS06520 deaminated glutathione amidase low > 75
Klebsiella pneumoniae MKP103 0.45 KDGMDA_16655 deoxyribodipyrimidine photo-lyase 0.19 KDGMDA_16350 deaminated glutathione amidase low > 95
Dickeya dianthicola 67-19 0.45 HGI48_RS06450 deoxyribodipyrimidine photo-lyase 0.19 HGI48_RS19475 deaminated glutathione amidase low > 71
Pectobacterium carotovorum WPP14 0.44 HER17_RS14995 deoxyribodipyrimidine photo-lyase 0.17 HER17_RS17575 deaminated glutathione amidase low > 75
Pantoea sp. MT58 0.43 IAI47_13815 deoxyribodipyrimidine photo-lyase 0.19 IAI47_14065 deaminated glutathione amidase low > 76
Shewanella sp. ANA-3 0.43 Shewana3_1166 deoxyribodipyrimidine photo-lyase type I (RefSeq) 0.42 Shewana3_3642 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.43 SO3384 phrB deoxyribodipyrimidine photolyase (NCBI ptt file) 0.44 SO4092 hydrolase, carbon-nitrogen family (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.43 Shew_1479 deoxyribodipyrimidine photo-lyase (RefSeq) 0.43 Shew_0409 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (RefSeq) low > 60
Pantoea agglomerans CFBP13505 P0401 0.42 PagCFBP13505_RS03490 deoxyribodipyrimidine photo-lyase 0.20 PagCFBP13505_RS03225 deaminated glutathione amidase low > 74
Pseudomonas aeruginosa PA14 0.40 IKLFDK_00195 deoxyribodipyrimidine photo-lyase 0.43 IKLFDK_01705 carbon-nitrogen hydrolase low > 100
Shewanella amazonensis SB2B 0.40 Sama_0811 deoxyribodipyrimidine photo-lyase (RefSeq) 0.41 Sama_0473 carbon-nitrogen family hydrolase (RefSeq) low > 62
Pseudomonas stutzeri RCH2 0.39 Psest_2397 Deoxyribodipyrimidine photolyase 0.41 Psest_3321 Predicted amidohydrolase low > 67
Marinobacter adhaerens HP15 0.39 HP15_715 deoxyribodipyrimidine photolyase 0.38 HP15_2449 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase low > 73
Pseudomonas fluorescens FW300-N2E3 0.39 AO353_14820 deoxyribodipyrimidine photolyase 0.41 AO353_05220 carbon-nitrogen hydrolase low > 101
Acinetobacter radioresistens SK82 0.39 MPMX26_01004 Deoxyribodipyrimidine photo-lyase 0.33 MPMX26_00580 Deaminated glutathione amidase low > 36
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_0961 deoxyribodipyrimidine photo-lyase type I 0.42 Psyr_4157 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_0961 deoxyribodipyrimidine photo-lyase type I 0.42 Psyr_4157 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase low > 86
Pseudomonas fluorescens SBW25 0.38 PFLU_RS03715 deoxyribodipyrimidine photo-lyase 0.41 PFLU_RS04335 carbon-nitrogen hydrolase family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS03715 deoxyribodipyrimidine photo-lyase 0.41 PFLU_RS04335 carbon-nitrogen hydrolase family protein low > 109
Pseudomonas simiae WCS417 0.38 PS417_03665 deoxyribodipyrimidine photolyase 0.42 PS417_04280 carbon-nitrogen hydrolase low > 88
Pseudomonas sp. S08-1 0.38 OH686_07850 Deoxyribodipyrimidine photolyase 0.45 OH686_08585 Uncharacterized subgroup of the nitrilase superfamily low > 80
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_5228 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) 0.41 Pf6N2E2_3281 FIG003879: Predicted amidohydrolase / Omega amidase (Nit2 homolog) low > 103
Pseudomonas lactucae CFBP13502 0.38 GEMAOFIL_00939 Deoxyribodipyrimidine photo-lyase 0.41 GEMAOFIL_01061 Deaminated glutathione amidase low > 93
Pseudomonas sp. RS175 0.38 PFR28_03648 Deoxyribodipyrimidine photo-lyase 0.42 PFR28_00160 Deaminated glutathione amidase low > 88
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_2927 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) 0.41 Pf1N1B4_1093 FIG003879: Predicted amidohydrolase / Omega amidase (Nit2 homolog) low > 87
Kangiella aquimarina DSM 16071 0.37 B158DRAFT_0621 Deoxyribodipyrimidine photolyase 0.32 B158DRAFT_2071 Predicted amidohydrolase low > 40
Acinetobacter baumannii LAC-4 0.37 RR41_RS05085 deoxyribodipyrimidine photo-lyase 0.35 RR41_RS15875 carbon-nitrogen hydrolase family protein low > 55
Pseudomonas fluorescens GW456-L13 0.37 PfGW456L13_1589 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) 0.42 PfGW456L13_5027 FIG003879: Predicted amidohydrolase / Omega amidase (Nit2 homolog) low > 87
Pseudomonas sp. BP01 0.37 JOY50_RS19560 phrB deoxyribodipyrimidine photo-lyase 0.40 JOY50_RS11065 carbon-nitrogen hydrolase family protein low > 84
Pseudomonas putida KT2440 0.37 PP_0739 deoxyribodipyrimidine photolyase 0.41 PP_0939 Carbon-nitrogen hydrolase family protein low > 96
Pseudomonas segetis P6 0.37 MPMX49_01348 Deoxyribodipyrimidine photo-lyase 0.42 MPMX49_03866 Deaminated glutathione amidase low > 75
Pseudomonas sp. DMC3 0.37 GFF4479 Deoxyribodipyrimidine photo-lyase 0.42 GFF1815 Deaminated glutathione amidase low > 89
Pseudomonas fluorescens FW300-N2C3 0.37 AO356_16530 deoxyribodipyrimidine photolyase 0.41 AO356_07100 carbon-nitrogen hydrolase low > 104
Pseudomonas sp. SVBP6 0.36 COO64_RS03260 phrB deoxyribodipyrimidine photo-lyase 0.42 COO64_RS04220 carbon-nitrogen hydrolase family protein low > 93
Methylophilus sp. DMC18 0.34 GFF828 Deoxyribodipyrimidine photo-lyase 0.37 GFF381 Deaminated glutathione amidase low > 43
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS33665 deoxyribodipyrimidine photo-lyase 0.38 BPHYT_RS03545 apolipoprotein acyltransferase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_06033 deoxyribodipyrimidine photo-lyase type I 0.37 H281DRAFT_04689 nitrilase low > 103
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS08600 deoxyribodipyrimidine photo-lyase 0.35 ABZR87_RS01100 carbon-nitrogen hydrolase family protein low > 80
Variovorax sp. OAS795 0.33 ABID97_RS24680 deoxyribodipyrimidine photo-lyase 0.35 ABID97_RS02000 carbon-nitrogen hydrolase family protein low > 91
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS15885 deoxyribodipyrimidine photolyase 0.36 RR42_RS05880 acyltransferase low > 128
Paraburkholderia sabiae LMG 24235 0.32 QEN71_RS17830 deoxyribodipyrimidine photo-lyase 0.38 QEN71_RS26550 carbon-nitrogen hydrolase family protein low > 153
Herbaspirillum seropedicae SmR1 0.32 HSERO_RS09280 deoxyribodipyrimidine photo-lyase 0.36 HSERO_RS07150 apolipoprotein acyltransferase low > 78
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF647 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) 0.31 GFF2535 FIG003879: Predicted amidohydrolase low > 90
Paraburkholderia graminis OAS925 0.32 ABIE53_004843 deoxyribodipyrimidine photo-lyase 0.38 ABIE53_000852 putative amidohydrolase low > 113
Ralstonia solanacearum UW163 0.32 UW163_RS00965 deoxyribodipyrimidine photo-lyase 0.35 UW163_RS08175 carbon-nitrogen hydrolase family protein — —
Ralstonia solanacearum IBSBF1503 0.32 RALBFv3_RS12600 deoxyribodipyrimidine photo-lyase 0.35 RALBFv3_RS05450 carbon-nitrogen hydrolase family protein low > 76
Variovorax sp. SCN45 0.32 GFF2156 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) 0.35 GFF5445 FIG003879: Uncharacterized subgroup of the nitrilase superfamily low > 127
Dechlorosoma suillum PS 0.31 Dsui_0591 deoxyribodipyrimidine photolyase 0.36 Dsui_3402 putative amidohydrolase low > 51
Azospirillum brasilense Sp245 0.31 AZOBR_RS09290 deoxyribodipyrimidine photo-lyase 0.40 AZOBR_RS02920 amidohydrolase low > 97
Acidovorax sp. GW101-3H11 0.29 Ac3H11_3983 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) 0.29 Ac3H11_1207 FIG003879: Predicted amidohydrolase low > 79
Echinicola vietnamensis KMM 6221, DSM 17526 0.29 Echvi_2083 Deoxyribodipyrimidine photolyase 0.12 Echvi_1887 Predicted amidohydrolase low > 79
Azospirillum sp. SherDot2 0.29 MPMX19_01584 Deoxyribodipyrimidine photo-lyase 0.40 MPMX19_02429 Deaminated glutathione amidase low > 112
Synechocystis sp000284455 PCC 6803 0.29 SGL_RS08150 deoxyribodipyrimidine photo-lyase, 8-HDF type 0.36 SGL_RS14360 carbon-nitrogen hydrolase family protein low > 52
Caulobacter crescentus NA1000 0.29 CCNA_01495 deoxyribodipyrimidine photolyase 0.35 CCNA_00871 carbon-nitrogen hydrolase family protein low > 66
Caulobacter crescentus NA1000 Δfur 0.29 CCNA_01495 deoxyribodipyrimidine photolyase 0.35 CCNA_00871 carbon-nitrogen hydrolase family protein low > 67
Rhizobium sp. OAE497 0.29 ABIE40_RS08320 deoxyribodipyrimidine photo-lyase 0.34 ABIE40_RS17345 carbon-nitrogen hydrolase family protein low > 107
Agrobacterium fabrum C58 0.28 Atu1218 DNA photolyase 0.34 Atu3510 amidohydrolase low > 89
Brevundimonas sp. GW460-12-10-14-LB2 0.28 A4249_RS05610 deoxyribodipyrimidine photo-lyase 0.35 A4249_RS13565 carbon-nitrogen hydrolase family protein low > 48
Pedobacter sp. GW460-11-11-14-LB5 0.28 CA265_RS17545 deoxyribodipyrimidine photolyase 0.15 CA265_RS15465 acyltransferase — —
Synechococcus elongatus PCC 7942 0.28 Synpcc7942_0112 phr Deoxyribodipyrimidine photo-lyase type I 0.36 Synpcc7942_2358 nitrilase-like low > 38
Rhodospirillum rubrum S1H 0.28 Rru_A2903 Deoxyribodipyrimidine photolyase (NCBI) 0.34 Rru_A0739 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (NCBI) low > 58
Mucilaginibacter yixingensis YX-36 DSM 26809 0.28 ABZR88_RS21110 deoxyribodipyrimidine photo-lyase 0.15 ABZR88_RS18075 carbon-nitrogen hydrolase — —
Dyella japonica UNC79MFTsu3.2 0.28 ABZR86_RS01855 deoxyribodipyrimidine photo-lyase 0.13 ABZR86_RS02765 carbon-nitrogen hydrolase — —
Alteromonas macleodii MIT1002 0.26 MIT1002_02045 Deoxyribodipyrimidine photo-lyase 0.38 MIT1002_00226 (R)-stereoselective amidase low > 70
Rhodopseudomonas palustris CGA009 0.26 TX73_016440 deoxyribodipyrimidine photo-lyase 0.36 TX73_003100 carbon-nitrogen hydrolase family protein low > 86
Xanthobacter sp. DMC5 0.26 GFF419 Deoxyribodipyrimidine photo-lyase 0.33 GFF102 Deaminated glutathione amidase — —
Lysobacter sp. OAE881 0.26 ABIE51_RS09260 deoxyribodipyrimidine photo-lyase 0.14 ABIE51_RS09320 carbon-nitrogen hydrolase — —
Rhodanobacter sp. FW510-T8 0.26 OKGIIK_13930 Deoxyribodipyrimidine photolyase 0.14 OKGIIK_06395 nit2 amidohydrolase low > 52
Xanthomonas campestris pv. campestris strain 8004 0.25 Xcc-8004.3484.1 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) 0.16 Xcc-8004.2374.1 N-carbamoylputrescine amidase (3.5.1.53) / Aliphatic amidase AmiE (EC 3.5.1.4) — —
Bosea sp. OAE506 0.23 ABIE41_RS15630 deoxyribodipyrimidine photo-lyase 0.14 ABIE41_RS12325 N-carbamoyl-D-amino-acid hydrolase low > 77
Rhodanobacter denitrificans FW104-10B01 0.23 LRK54_RS07510 DNA photolyase family protein 0.14 LRK54_RS00825 amidohydrolase low > 59
Rhodanobacter denitrificans MT42 0.23 LRK55_RS07250 deoxyribodipyrimidine photo-lyase 0.14 LRK55_RS00600 amidohydrolase low > 63
Sphingobium sp. HT1-2 0.23 GFF76 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) 0.34 GFF2532 FIG147869: Carbon-nitrogen hydrolase low > 95
Dinoroseobacter shibae DFL-12 0.23 Dshi_2318 Deoxyribodipyrimidine photo-lyase (RefSeq) 0.38 Dshi_3506 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.20 PGA1_c13910 deoxyribodipyrimidine photo-lyase PhrB 0.39 PGA1_c34700 putative carbon-nitrogen hydrolase low > 62

Not shown: 16 genomes with orthologs for CSW01_14320 only; 15 genomes with orthologs for CSW01_02215 only