Conservation of cofitness between CSW01_05375 and CSW01_01010 in Vibrio cholerae E7946 ATCC 55056

100 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_05375 recombination protein RecR 1.0 CSW01_01010 oligopeptidase A 0.56 3
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.81 GFF4390 Recombination protein RecR 0.72 GFF517 Oligopeptidase A (EC 3.4.24.70) low > 78
Escherichia coli ECOR27 0.81 NOLOHH_01085 recR recombination mediator RecR 0.72 NOLOHH_08350 prlC oligopeptidase A low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.81 OHPLBJKB_03202 Recombination protein RecR 0.72 OHPLBJKB_00205 Oligopeptidase A low > 74
Enterobacter sp. TBS_079 0.81 MPMX20_01074 Recombination protein RecR 0.72 MPMX20_04397 Oligopeptidase A low > 85
Escherichia coli ECRC100 0.81 OKFHMN_08155 recR recombination mediator RecR 0.72 OKFHMN_16415 prlC oligopeptidase A low > 79
Escherichia coli ECRC101 0.81 MCAODC_27380 recR recombination mediator RecR 0.72 MCAODC_06930 prlC oligopeptidase A low > 87
Escherichia coli ECOR38 0.81 HEPCGN_06770 recR recombination mediator RecR 0.72 HEPCGN_15325 prlC oligopeptidase A low > 88
Escherichia coli ECRC102 0.81 NIAGMN_06210 recR recombination mediator RecR 0.72 NIAGMN_14180 prlC oligopeptidase A low > 80
Escherichia coli ECRC99 0.81 KEDOAH_19810 recR recombination mediator RecR 0.72 KEDOAH_11730 prlC oligopeptidase A — —
Escherichia coli BW25113 0.81 b0472 recR recombination protein RecR (NCBI) 0.72 b3498 prlC oligopeptidase A (NCBI) 0.21 66
Escherichia coli BL21 0.81 ECD_00423 gap repair protein 0.72 ECD_03347 oligopeptidase A low > 61
Escherichia coli Nissle 1917 0.81 ECOLIN_RS02805 recombination mediator RecR 0.72 ECOLIN_RS19985 oligopeptidase A — —
Escherichia fergusonii Becca 0.81 EFB2_03586 Recombination protein RecR 0.72 EFB2_00317 Oligopeptidase A low > 86
Escherichia coli ECRC98 0.81 JDDGAC_11805 recR recombination mediator RecR 0.72 JDDGAC_20045 prlC oligopeptidase A low > 87
Enterobacter asburiae PDN3 0.81 EX28DRAFT_2485 DNA replication and repair protein RecR 0.72 EX28DRAFT_4063 Zn-dependent oligopeptidases low > 76
Escherichia coli ECRC62 0.81 BNILDI_22505 recR recombination mediator RecR 0.72 BNILDI_03210 prlC oligopeptidase A low > 75
Klebsiella michiganensis M5al 0.81 BWI76_RS06830 recombination protein RecR 0.72 BWI76_RS26610 oligopeptidase A low > 92
Klebsiella pneumoniae MRSN742743 0.81 GJGHJB_03813 recR recombination mediator RecR 0.73 GJGHJB_00253 prlC oligopeptidase A low > 83
Klebsiella pneumoniae MKP103 0.81 KDGMDA_14890 recombination mediator RecR 0.73 KDGMDA_07425 oligopeptidase A low > 94
Dickeya dadantii 3937 0.80 DDA3937_RS05790 recombination protein RecR 0.72 DDA3937_RS21265 oligopeptidase A low > 74
Serratia liquefaciens MT49 0.80 IAI46_05240 recombination protein RecR 0.71 IAI46_24210 oligopeptidase A low > 87
Pectobacterium carotovorum WPP14 0.79 HER17_RS15695 recombination mediator RecR 0.71 HER17_RS21300 oligopeptidase A low > 75
Dickeya dianthicola 67-19 0.79 HGI48_RS05840 recombination protein RecR 0.70 HGI48_RS00045 oligopeptidase A — —
Dickeya dianthicola ME23 0.79 DZA65_RS06165 recombination protein RecR 0.71 DZA65_RS00035 oligopeptidase A low > 75
Erwinia amylovora T8 0.79 OLJFJH_17805 recombination mediator RecR 0.71 OLJFJH_04530 Oligopeptidase A low > 58
Pantoea agglomerans CFBP13505 P0401 0.78 PagCFBP13516_RS14715 recR recombination mediator RecR 0.72 PagCFBP13516_RS01335 prlC oligopeptidase A low > 80
Rahnella sp. WP5 0.78 EX31_RS22525 recombination protein RecR 0.70 EX31_RS05165 oligopeptidase A low > 89
Pantoea sp. MT58 0.78 IAI47_14465 recombination protein RecR 0.72 IAI47_01345 oligopeptidase A low > 76
Erwinia tracheiphila HP pepo 2.2 0.77 IJEDHG_16645 recR recombination mediator RecR 0.71 IJEDHG_12590 prlC oligopeptidase A low > 61
Erwinia tracheiphila SCR3 0.77 LU632_RS18105 recR recombination mediator RecR 0.71 LU632_RS19470 prlC oligopeptidase A low > 73
Shewanella sp. ANA-3 0.67 Shewana3_2444 recR recombination protein RecR (RefSeq) 0.67 Shewana3_4051 oligopeptidase A (RefSeq) low > 73
Shewanella oneidensis MR-1 0.66 SO2015 recR recombination protein RecR (NCBI ptt file) 0.67 SO4699 prlC oligopeptidase A (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.65 Shew_2233 recombination protein RecR (RefSeq) 0.68 Shew_3657 oligopeptidase A (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.65 MIT1002_02649 Recombination protein RecR 0.66 MIT1002_03633 Oligopeptidase A low > 70
Shewanella amazonensis SB2B 0.64 Sama_1312 recR recombination protein RecR (RefSeq) 0.67 Sama_3546 oligopeptidase A (RefSeq) low > 62
Pseudomonas putida KT2440 0.59 PP_4267 Recombination protein RecR 0.56 PP_0096 oligopeptidase A low > 96
Pseudomonas aeruginosa PA14 0.58 IKLFDK_07325 recombination mediator RecR 0.58 IKLFDK_25215 oligopeptidase A low > 98
Kangiella aquimarina DSM 16071 0.58 B158DRAFT_2480 DNA replication and repair protein RecR 0.59 B158DRAFT_0457 Zn-dependent oligopeptidases low > 40
Pseudomonas aeruginosa PUPa3 0.58 NPBIFN_03642 recR recombination mediator RecR 0.58 NPBIFN_00070 prlC oligopeptidase A low > 101
Pseudomonas sp. DMC3 0.58 GFF708 Recombination protein RecR 0.56 GFF663 Oligopeptidase A low > 89
Pseudomonas aeruginosa MRSN321 0.58 PFGADD_03606 recR recombination mediator RecR 0.58 PFGADD_00072 prlC oligopeptidase A low > 99
Pseudomonas sp. BP01 0.58 JOY50_RS00135 recR recombination mediator RecR 0.56 JOY50_RS21245 prlC oligopeptidase A low > 84
Pseudomonas stutzeri RCH2 0.58 Psest_2545 recombination protein RecR 0.57 Psest_4320 Zn-dependent oligopeptidases low > 67
Pseudomonas sp. RS175 0.58 PFR28_01077 Recombination protein RecR 0.56 PFR28_04699 Oligopeptidase A low > 88
Pseudomonas fluorescens FW300-N2E2 0.58 Pf6N2E2_2325 Recombination protein RecR 0.56 Pf6N2E2_4091 Oligopeptidase A (EC 3.4.24.70) low > 103
Pseudomonas protegens RBAN4 0.58 FABNJH_09905 recR recombination mediator RecR 0.56 FABNJH_00260 prlC oligopeptidase A — —
Pseudomonas fluorescens FW300-N2C3 0.58 AO356_02495 recombination protein RecR 0.56 AO356_11120 oligopeptidase A low > 104
Pseudomonas segetis P6 0.58 ACVTMO_RS11090 recR recombination mediator RecR 0.57 ACVTMO_RS01765 prlC oligopeptidase A low > 75
Pseudomonas fluorescens FW300-N1B4 0.58 Pf1N1B4_3864 Recombination protein RecR 0.56 Pf1N1B4_1844 Oligopeptidase A (EC 3.4.24.70) 0.39 17
Rhodanobacter denitrificans FW104-10B01 0.58 LRK54_RS01250 recombination mediator RecR 0.47 LRK54_RS08615 M3 family metallopeptidase low > 59
Pseudomonas fluorescens SBW25-INTG 0.58 PFLU_RS22415 recombination protein RecR 0.56 PFLU_RS00240 oligopeptidase A 0.18 105
Pseudomonas lactucae CFBP13502 0.58 GEMAOFIL_04304 Recombination protein RecR 0.56 GEMAOFIL_00254 Oligopeptidase A low > 96
Pseudomonas simiae WCS417 0.58 PS417_20800 recombination protein RecR 0.56 PS417_00245 oligopeptidase A 0.20 88
Pseudomonas fluorescens SBW25 0.58 PFLU_RS22415 recombination protein RecR 0.56 PFLU_RS00240 oligopeptidase A low > 109
Pseudomonas orientalis W4I3 0.58 QF045_RS22605 recombination mediator RecR 0.56 QF045_RS03190 oligopeptidase A low > 93
Dyella japonica UNC79MFTsu3.2 0.57 ABZR86_RS06235 recombination mediator RecR 0.48 ABZR86_RS14940 M3 family metallopeptidase low > 74
Rhodanobacter denitrificans MT42 0.57 LRK55_RS01020 recombination mediator RecR 0.47 LRK55_RS08380 M3 family metallopeptidase low > 63
Pseudomonas sp. SVBP6 0.57 COO64_RS18630 recR recombination mediator RecR 0.56 COO64_RS02335 prlC oligopeptidase A low > 91
Pseudomonas fluorescens FW300-N2E3 0.57 AO353_00675 recombination protein RecR 0.56 AO353_10775 oligopeptidase A low > 101
Rhodanobacter sp. FW510-T8 0.57 OKGIIK_05655 recR recombination mediator RecR 0.48 OKGIIK_15380 dcp oligopeptidase A 0.40 14
Marinobacter adhaerens HP15 0.57 HP15_1883 recombination protein RecR 0.58 HP15_3759 oligopeptidase A-like protein — —
Rhodanobacter sp000427505 FW510-R12 0.57 LRK53_RS08825 recombination mediator RecR 0.48 LRK53_RS02390 M3 family metallopeptidase low > 59
Pseudomonas syringae pv. syringae B728a 0.57 Psyr_3396 DNA replication and repair protein RecR 0.57 Psyr_0045 oligopeptidase A, Metallo peptidase, MEROPS family M03A low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.57 Psyr_3396 DNA replication and repair protein RecR 0.57 Psyr_0045 oligopeptidase A, Metallo peptidase, MEROPS family M03A low > 86
Pseudomonas fluorescens GW456-L13 0.57 PfGW456L13_4074 Recombination protein RecR 0.57 PfGW456L13_624 Oligopeptidase A (EC 3.4.24.70) low > 87
Pseudomonas sp. S08-1 0.55 OH686_02385 recombination protein RecR 0.56 OH686_12360 Oligopeptidase A low > 80
Dechlorosoma suillum PS 0.55 Dsui_1811 recombination protein RecR 0.48 Dsui_0046 Zn-dependent oligopeptidase 0.48 25
Xanthomonas campestris pv. campestris strain 8004 0.54 Xcc-8004.4012.1 Recombination protein RecR 0.47 Xcc-8004.4539.1 Oligopeptidase A (EC 3.4.24.70) low > 74
Methylophilus sp. DMC18 0.53 GFF1237 Recombination protein RecR 0.52 GFF2262 Oligopeptidase A low > 43
Variovorax sp. OAS795 0.52 ABID97_RS14700 recombination mediator RecR 0.44 ABID97_RS14080 M3 family metallopeptidase 0.32 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF4253 Recombination protein RecR 0.43 GFF4214 Oligopeptidase A (EC 3.4.24.70) low > 90
Acinetobacter radioresistens SK82 0.52 MPMX26_01643 Recombination protein RecR 0.46 MPMX26_02685 Oligopeptidase A low > 36
Ralstonia sp. UNC404CL21Col 0.52 ABZR87_RS10810 recombination mediator RecR 0.47 ABZR87_RS13490 M3 family metallopeptidase low > 80
Variovorax sp. SCN45 0.52 GFF1110 Recombination protein RecR 0.44 GFF963 Oligopeptidase A (EC 3.4.24.70) low > 127
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS18355 recombinase RecR 0.48 HSERO_RS07290 oligopeptidase A low > 78
Acinetobacter baumannii LAC-4 0.50 RR41_RS12660 recombination mediator RecR 0.47 RR41_RS02340 M3 family metallopeptidase low > 55
Paraburkholderia bryophila 376MFSha3.1 0.50 H281DRAFT_00834 DNA replication and repair protein RecR 0.46 H281DRAFT_00461 oligopeptidase A Metallo peptidase. MEROPS family M03A low > 103
Ralstonia solanacearum PSI07 0.49 RPSI07_RS18205 recombination protein RecR 0.47 RPSI07_RS15795 oligopeptidase A low > 81
Ralstonia solanacearum IBSBF1503 0.49 RALBFv3_RS15170 recombination protein RecR 0.47 RALBFv3_RS01690 oligopeptidase A 0.48 4
Ralstonia solanacearum UW163 0.49 UW163_RS12640 recombination protein RecR 0.47 UW163_RS15000 oligopeptidase A — —
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS13270 recombination protein RecR 0.47 RR42_RS07340 oligopeptidase A low > 128
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS22285 recombination mediator RecR 0.48 QEN71_RS05695 M3 family metallopeptidase 0.57 146
Ralstonia solanacearum GMI1000 0.49 RS_RS05980 recombination protein RecR 0.47 RS_RS08035 oligopeptidase A low > 80
Paraburkholderia graminis OAS925 0.49 ABIE53_002048 recombination protein RecR 0.48 ABIE53_002798 oligopeptidase A low > 113
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS09070 recombination protein RecR 0.48 BPHYT_RS12875 oligopeptidase A low > 109
Acidovorax sp. GW101-3H11 0.45 Ac3H11_473 Recombination protein RecR 0.43 Ac3H11_4097 Oligopeptidase A (EC 3.4.24.70) low > 79
Castellaniella sp019104865 MT123 0.43 ABCV34_RS15480 recombination mediator RecR 0.42 ABCV34_RS04180 M3 family metallopeptidase low > 48
Synechocystis sp000284455 PCC 6803 0.41 SGL_RS17075 recombination mediator RecR 0.42 SGL_RS17300 M3 family metallopeptidase — —
Rhodopseudomonas palustris CGA009 0.38 TX73_003195 recombination mediator RecR 0.26 TX73_004495 M3 family metallopeptidase — —
Phocaeicola vulgatus CL09T03C04 0.37 HMPREF1058_RS18560 recombination protein RecR 0.35 HMPREF1058_RS17165 M3 family metallopeptidase low > 67
Phocaeicola dorei CL03T12C01 0.37 ABI39_RS14870 recombination protein RecR 0.35 ABI39_RS13165 M3 family metallopeptidase low > 72
Echinicola vietnamensis KMM 6221, DSM 17526 0.36 Echvi_1987 recombination protein RecR 0.33 Echvi_2572 Zn-dependent oligopeptidases low > 79
Parabacteroides merdae CL09T00C40 0.36 HMPREF1078_RS07615 recombination mediator RecR 0.29 HMPREF1078_RS14650 M3 family metallopeptidase low > 61
Sinorhizobium meliloti 1021 0.36 SMc02908 recombination protein RecR 0.27 SMc04403 peptidyl-dipeptidase A protein low > 103
Bacteroides thetaiotaomicron VPI-5482 0.36 BT1081 recombination protein recR (NCBI ptt file) 0.32 BT4262 peptidyl-dipeptidase (NCBI ptt file) low > 81
Bacteroides stercoris CC31F 0.36 HMPREF1181_RS16455 recombination protein RecR 0.35 HMPREF1181_RS06150 M3 family metallopeptidase low > 56
Cellulophaga baltica 18 0.35 M666_RS09385 recombination mediator RecR 0.36 M666_RS01280 M3 family metallopeptidase low > 67
Agrobacterium fabrum C58 0.35 Atu0093 Recombination protein 0.27 Atu2664 peptidyl-dipeptidase low > 89
Phaeobacter inhibens DSM 17395 0.35 PGA1_c30290 recombination protein RecR 0.26 PGA1_c26590 peptidyl-dipeptidase Dcp low > 62
Rhizobium sp. OAE497 0.33 ABIE40_RS00300 recombination mediator RecR 0.27 ABIE40_RS18135 M3 family metallopeptidase low > 107

Not shown: 22 genomes with orthologs for CSW01_05375 only; 1 genomes with orthologs for CSW01_01010 only