Conservation of cofitness between CSW01_09465 and CSW01_00015 in Vibrio cholerae E7946 ATCC 55056

99 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09465 NAD(P)/FAD-dependent oxidoreductase 1.0 CSW01_00015 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.86 6
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.73 GFF3392 NADH dehydrogenase (EC 1.6.99.3) 0.76 GFF1750 GTPase and tRNA-U34 5-formylation enzyme TrmE low > 78
Enterobacter asburiae PDN3 0.73 EX28DRAFT_1821 NADH dehydrogenase, FAD-containing subunit 0.75 EX28DRAFT_3993 tRNA modification GTPase TrmE — —
Enterobacter sp. TBS_079 0.73 MPMX20_01790 NADH dehydrogenase 0.75 MPMX20_04650 tRNA modification GTPase MnmE low > 85
Escherichia coli ECOR38 0.73 HEPCGN_23990 ndh NADH-quinone dehydrogenase 0.76 HEPCGN_13680 tRNA modification GTPase MnmE low > 88
Escherichia coli ECRC62 0.73 BNILDI_19185 ndh NADH-quinone dehydrogenase 0.76 BNILDI_04405 tRNA modification GTPase MnmE 0.64 72
Escherichia coli BW25113 0.73 b1109 ndh respiratory NADH dehydrogenase 2/cupric reductase (NCBI) 0.76 b3706 trmE tRNA modification GTPase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_02557 NADH dehydrogenase 0.76 OHPLBJKB_04346 tRNA modification GTPase MnmE — —
Escherichia fergusonii Becca 0.73 EFB2_02866 NADH dehydrogenase 0.76 EFB2_04925 tRNA modification GTPase MnmE 0.37 27
Escherichia coli ECOR27 0.73 NOLOHH_21020 ndh NADH-quinone dehydrogenase 0.76 NOLOHH_07125 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 76
Escherichia coli Nissle 1917 0.73 ECOLIN_RS06400 NADH-quinone dehydrogenase 0.76 ECOLIN_RS21345 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 55
Escherichia coli BL21 0.73 ECD_01105 respiratory NADH dehydrogenase 2/cupric reductase 0.76 ECD_03590 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase low > 61
Escherichia coli ECRC101 0.72 MCAODC_22855 ndh NADH-quinone dehydrogenase 0.76 MCAODC_05495 tRNA modification GTPase MnmE — —
Escherichia coli ECRC99 0.72 KEDOAH_24260 ndh NADH-quinone dehydrogenase 0.76 KEDOAH_13165 tRNA modification GTPase MnmE — —
Escherichia coli ECRC102 0.72 NIAGMN_24335 ndh NADH-quinone dehydrogenase 0.76 NIAGMN_12740 tRNA modification GTPase MnmE — —
Escherichia coli ECRC100 0.72 OKFHMN_03495 ndh NADH-quinone dehydrogenase 0.76 OKFHMN_14985 tRNA modification GTPase MnmE — —
Escherichia coli ECRC98 0.72 JDDGAC_07155 ndh NADH-quinone dehydrogenase 0.76 JDDGAC_18605 tRNA modification GTPase MnmE — —
Serratia liquefaciens MT49 0.72 IAI46_09910 NAD(P)/FAD-dependent oxidoreductase 0.75 IAI46_25250 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 87
Klebsiella pneumoniae MKP103 0.72 KDGMDA_18770 Type II NADH:quinone oxidoreductase 0.75 KDGMDA_08700 tRNA modification GTPase MnmE low > 95
Rahnella sp. WP5 0.72 EX31_RS24510 NAD(P)/FAD-dependent oxidoreductase 0.75 EX31_RS06000 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 89
Klebsiella michiganensis M5al 0.72 BWI76_RS11175 NADH dehydrogenase 0.77 BWI76_RS00050 tRNA modification GTPase — —
Pantoea sp. MT58 0.71 IAI47_11985 NAD(P)/FAD-dependent oxidoreductase 0.73 IAI47_18830 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 76
Erwinia tracheiphila SCR3 0.71 LU632_RS14740 NAD(P)/FAD-dependent oxidoreductase 0.73 LU632_RS25300 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Erwinia tracheiphila HP pepo 2.2 0.71 IJEDHG_00570 NADH dehydrogenase 0.73 IJEDHG_09755 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Pantoea agglomerans CFBP13505 P0401 0.71 PagCFBP13505_RS05350 NAD(P)/FAD-dependent oxidoreductase 0.74 PagCFBP13505_RS19345 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Dickeya dadantii 3937 0.71 DDA3937_RS13040 NAD(P)/FAD-dependent oxidoreductase 0.76 DDA3937_RS21310 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 74
Dickeya dianthicola 67-19 0.70 HGI48_RS13105 NAD(P)/FAD-dependent oxidoreductase 0.75 HGI48_RS21710 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 71
Pectobacterium carotovorum WPP14 0.70 HER17_RS08735 NAD(P)/FAD-dependent oxidoreductase 0.75 HER17_RS21825 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 75
Erwinia amylovora T8 0.70 OLJFJH_15455 FAD-dependent oxidoreductase 0.74 OLJFJH_05190 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Dickeya dianthicola ME23 0.69 DZA65_RS13575 NAD(P)/FAD-dependent oxidoreductase 0.75 DZA65_RS22695 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 75
Shewanella loihica PV-4 0.56 Shew_2195 NADH dehydrogenase (RefSeq) 0.73 Shew_3865 trmE tRNA modification GTPase TrmE (RefSeq) — —
Pseudomonas segetis P6 0.56 ACVTMO_RS19395 NAD(P)/FAD-dependent oxidoreductase 0.64 ACVTMO_RS01220 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Pseudomonas aeruginosa PA14 0.54 IKLFDK_01385 FAD-dependent oxidoreductase 0.66 IKLFDK_25575 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 98
Pseudomonas aeruginosa MRSN321 0.54 DY961_RS23775 NAD(P)/FAD-dependent oxidoreductase 0.66 DY961_RS26185 mnmE;go_function=GTPase tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Pseudomonas aeruginosa PUPa3 0.54 DQ20_RS56240 NAD(P)/FAD-dependent oxidoreductase 0.66 DQ20_RS58595 mnmE;go_function=GTPase tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Pseudomonas putida KT2440 0.54 PP_0626 NADH dehydrogenase 0.65 PP_0005 GTPase — —
Pseudomonas stutzeri RCH2 0.54 Psest_0715 NADH dehydrogenase, FAD-containing subunit 0.64 Psest_4373 tRNA modification GTPase TrmE — —
Pseudomonas sp. BP01 0.54 JOY50_RS27170 NAD(P)/FAD-dependent oxidoreductase 0.65 JOY50_RS08375 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Pseudomonas sp. RS175 0.54 PFR28_03740 NADH dehydrogenase 0.64 PFR28_04588 tRNA modification GTPase MnmE — —
Pseudomonas sp. SVBP6 0.54 COO64_RS11095 NAD(P)/FAD-dependent oxidoreductase 0.63 COO64_RS02085 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_15965 NADH dehydrogenase 0.64 AO356_11660 tRNA modification GTPase MnmE — —
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_5132 NADH dehydrogenase (EC 1.6.99.3) 0.64 Pf6N2E2_4202 GTPase and tRNA-U34 5-formylation enzyme TrmE — —
Pseudomonas sp. S08-1 0.53 OH686_16450 NADH dehydrogenase 0.63 OH686_12655 tRNA modification GTPase TrmE — —
Alteromonas macleodii MIT1002 0.53 MIT1002_03885 NADH dehydrogenase 0.67 MIT1002_04128 tRNA modification GTPase MnmE — —
Pseudomonas sp. DMC3 0.53 GFF4008 NADH dehydrogenase 0.64 GFF573 tRNA modification GTPase MnmE — —
Pseudomonas fluorescens FW300-N1B4 0.53 Pf1N1B4_2826 NADH dehydrogenase (EC 1.6.99.3) 0.64 Pf1N1B4_1933 GTPase and tRNA-U34 5-formylation enzyme TrmE — —
Pseudomonas simiae WCS417 0.53 PS417_03855 NADH dehydrogenase 0.64 PS417_28540 tRNA modification GTPase MnmE — —
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS03905 NAD(P)/FAD-dependent oxidoreductase 0.64 PFLU_RS30195 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Pseudomonas fluorescens SBW25 0.53 PFLU_RS03905 NAD(P)/FAD-dependent oxidoreductase 0.64 PFLU_RS30195 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 109
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_1496 NADH dehydrogenase (EC 1.6.99.3) 0.64 PfGW456L13_670 GTPase and tRNA-U34 5-formylation enzyme TrmE — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_0790 FAD-dependent pyridine nucleotide-disulfide oxidoreductase 0.64 Psyr_5133 tRNA modification GTPase trmE low > 86
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_0790 FAD-dependent pyridine nucleotide-disulfide oxidoreductase 0.64 Psyr_5133 tRNA modification GTPase trmE low > 86
Pseudomonas lactucae CFBP13502 0.53 GEMAOFIL_00976 NADH dehydrogenase 0.64 GEMAOFIL_00178 tRNA modification GTPase MnmE — —
Pseudomonas fluorescens FW300-N2E3 0.53 AO353_14255 NADH dehydrogenase 0.64 AO353_10455 tRNA modification GTPase MnmE low > 101
Pseudomonas orientalis W4I3 0.52 QF045_RS06840 NAD(P)/FAD-dependent oxidoreductase 0.64 QF045_RS02925 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 93
Marinobacter adhaerens HP15 0.51 HP15_3830 FAD-dependent pyridine nucleotide-disulfide oxidoreductase 0.68 HP15_3698 tRNA modification GTPase TrmE — —
Sphingomonas koreensis DSMZ 15582 0.50 Ga0059261_1466 NADH dehydrogenase, FAD-containing subunit 0.23 Ga0059261_2204 tRNA modification GTPase trmE low > 68
Sphingobium sp. HT1-2 0.48 GFF1523 NADH dehydrogenase (EC 1.6.99.3) 0.25 GFF4133 tRNA-5-carboxymethylaminomethyl-2- thiouridine(34) synthesis protein MnmE low > 95
Variovorax sp. OAS795 0.48 ABID97_RS26565 NAD(P)/FAD-dependent oxidoreductase 0.50 ABID97_RS02655 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS26100 pyridine nucleotide-disulfide oxidoreductase 0.49 RR42_RS20805 tRNA modification GTPase TrmE — —
Methylophilus sp. DMC18 0.47 GFF2428 NADH dehydrogenase 0.49 GFF2105 tRNA modification GTPase MnmE — —
Rhodopseudomonas palustris CGA009 0.44 TX73_005675 NAD(P)/FAD-dependent oxidoreductase 0.30 TX73_001535 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 86
Shewanella amazonensis SB2B 0.44 Sama_0936 NADH dehydrogenase (RefSeq) 0.75 Sama_0008 trmE tRNA modification GTPase TrmE (RefSeq) — —
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS15675 NAD(P)/FAD-dependent oxidoreductase 0.49 ABZR87_RS05350 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.42 8
Shewanella oneidensis MR-1 0.42 SO3517 ndh NADH dehydrogenase (NCBI ptt file) 0.75 SO0003 trmE tRNA modification GTPase TrmE (NCBI ptt file) low > 76
Ralstonia solanacearum UW163 0.42 UW163_RS09925 NAD(P)/FAD-dependent oxidoreductase 0.49 UW163_RS04170 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS03745 NAD(P)/FAD-dependent oxidoreductase 0.49 RALBFv3_RS09410 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Ralstonia solanacearum GMI1000 0.42 RS_RS11190 NAD(P)/FAD-dependent oxidoreductase 0.49 RS_RS00020 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Ralstonia solanacearum PSI07 0.42 RPSI07_RS13485 NAD(P)/FAD-dependent oxidoreductase 0.49 RPSI07_RS23950 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Paraburkholderia bryophila 376MFSha3.1 0.41 H281DRAFT_06021 NADH dehydrogenase 0.49 H281DRAFT_02320 tRNA modification GTPase trmE — —
Shewanella sp. ANA-3 0.41 Shewana3_3123 FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq) 0.75 Shewana3_0005 trmE tRNA modification GTPase TrmE (RefSeq) low > 73
Paraburkholderia graminis OAS925 0.41 ABIE53_004853 NADH dehydrogenase 0.50 ABIE53_000332 tRNA modification GTPase — —
Burkholderia phytofirmans PsJN 0.41 BPHYT_RS33605 FAD-dependent pyridine nucleotide-disulfide oxidoreductase 0.50 BPHYT_RS19830 tRNA modification GTPase TrmE — —
Paraburkholderia sabiae LMG 24235 0.40 QEN71_RS17890 NAD(P)/FAD-dependent oxidoreductase 0.49 QEN71_RS29655 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Acinetobacter baumannii LAC-4 0.40 RR41_RS05095 NAD(P)/FAD-dependent oxidoreductase 0.50 RR41_RS19010 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Acinetobacter radioresistens SK82 0.37 MPMX26_01006 NADH dehydrogenase 0.48 MPMX26_03070 tRNA modification GTPase MnmE — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF4021 NADH dehydrogenase (EC 1.6.99.3) 0.52 GFF2437 GTPase and tRNA-U34 5-formylation enzyme TrmE — —
Rhodanobacter denitrificans FW104-10B01 0.36 LRK54_RS07490 NAD(P)/FAD-dependent oxidoreductase 0.46 LRK54_RS08505 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 59
Rhodanobacter denitrificans MT42 0.36 LRK55_RS07230 NAD(P)/FAD-dependent oxidoreductase 0.46 LRK55_RS08270 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 63
Herbaspirillum seropedicae SmR1 0.19 HSERO_RS08760 FAD-dependent pyridine nucleotide-disulfide oxidoreductase 0.48 HSERO_RS21670 tRNA modification GTPase TrmE — —
Synechococcus elongatus PCC 7942 0.18 Synpcc7942_0101 ndbA type 2 NADH dehydrogenase 0.26 Synpcc7942_1582 trmE tRNA modification GTPase TrmE — —
Cellulophaga baltica 18 0.17 M666_RS07185 NAD(P)/FAD-dependent oxidoreductase 0.30 M666_RS12855 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 67
Desulfovibrio vulgaris Hildenborough JW710 0.17 DVU1165 ndh NADH respiratory dehydrogenase (Regina ONeil) 0.22 DVU1079 trmE tRNA modification GTPase TrmE (TIGR) low > 55
Xanthomonas campestris pv. campestris strain 8004 0.17 Xcc-8004.4769.1 NADH dehydrogenase (EC 1.6.99.3) 0.41 Xcc-8004.5407.1 GTPase and tRNA-U34 5-formylation enzyme TrmE low > 74
Rhizobium sp. OAE497 0.17 ABIE40_RS11380 NAD(P)/FAD-dependent oxidoreductase 0.28 ABIE40_RS19220 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 107
Sinorhizobium meliloti 1021 0.16 SMc04452 NADH dehydrogenase transmembrane protein 0.28 SMc02797 tRNA modification GTPase TrmE — —
Synechocystis sp000284455 PCC 6803 0.16 SGL_RS08135 NAD(P)/FAD-dependent oxidoreductase 0.26 SGL_RS08695 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Acidovorax sp. GW101-3H11 0.16 Ac3H11_2167 NADH dehydrogenase (EC 1.6.99.3) 0.51 Ac3H11_4264 GTPase and tRNA-U34 5-formylation enzyme TrmE low > 79
Variovorax sp. SCN45 0.16 GFF6814 NADH dehydrogenase (EC 1.6.99.3) 0.49 GFF3275 tRNA-5-carboxymethylaminomethyl-2-thiouridine(34) synthesis protein MnmE — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS14020 NAD(P)/FAD-dependent oxidoreductase 0.29 ABZR88_RS02725 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Azospirillum brasilense Sp245 0.15 AZOBR_RS00545 FAD-dependent pyridine nucleotide-disulfide oxidoreductase 0.27 AZOBR_RS01805 tRNA modification GTPase TrmE low > 97
Pontibacter actiniarum KMM 6156, DSM 19842 0.15 CA264_14170 FAD-dependent oxidoreductase 0.31 CA264_06625 tRNA modification GTPase — —
Agrobacterium fabrum C58 0.15 Atu2023 NADH dehydrogenase 0.28 Atu2832 tRNA modification GTPase low > 89
Echinicola vietnamensis KMM 6221, DSM 17526 0.15 Echvi_3156 NADH dehydrogenase, FAD-containing subunit 0.32 Echvi_3509 tRNA modification GTPase TrmE — —
Phocaeicola dorei CL03T12C01 0.15 ABI39_RS15145 NAD(P)/FAD-dependent oxidoreductase 0.27 ABI39_RS18355 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 72
Bacteroides ovatus ATCC 8483 0.14 BACOVA_04275 pyridine nucleotide-disulfide oxidoreductase 0.28 BACOVA_05338 tRNA modification GTPase TrmE low > 96
Bosea sp. OAE506 0.13 ABIE41_RS00975 NAD(P)/FAD-dependent oxidoreductase 0.27 ABIE41_RS04680 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 77
Dyella japonica UNC79MFTsu3.2 0.12 ABZR86_RS12540 NAD(P)/FAD-dependent oxidoreductase 0.46 ABZR86_RS15115 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 74
Bacteroides thetaiotaomicron VPI-5482 0.12 BT1537 putative NADH dehydrogenase (NCBI ptt file) 0.28 BT4551 putative GTPase, ThdF family (NCBI ptt file) low > 81
Pedobacter sp. GW460-11-11-14-LB5 0.10 CA265_RS13110 FAD-dependent oxidoreductase 0.28 CA265_RS10450 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —

Not shown: 1 genomes with orthologs for CSW01_09465 only; 20 genomes with orthologs for CSW01_00015 only