| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Caulobacter crescentus NA1000 | 1.0 | CCNA_03346 | | crossover junction endodeoxyribonuclease ruvC | 1.0 | CCNA_00195 | | 3-isopropylmalate dehydratase small subunit | 0.43 | 7 |
| Caulobacter crescentus NA1000 Δfur | 1.00 | CCNA_03346 | | crossover junction endodeoxyribonuclease ruvC | 1.00 | CCNA_00195 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.55 | A4249_RS15855 | | crossover junction endodeoxyribonuclease RuvC | 0.39 | A4249_RS10000 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Magnetospirillum magneticum AMB-1 | 0.45 | AMB_RS16260 | | crossover junction endodeoxyribonuclease RuvC | 0.57 | AMB_RS20565 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Rhodospirillum rubrum S1H | 0.45 | Rru_A1087 | | Crossover junction endodeoxyribonuclease RuvC (NCBI) | 0.56 | Rru_A1190 | | 3-isopropylmalate dehydratase small subunit region (NCBI) | — | — |
| Bosea sp. OAE506 | 0.44 | ABIE41_RS09470 | | crossover junction endodeoxyribonuclease RuvC | 0.59 | ABIE41_RS11640 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.42 | RR42_RS02715 | | Holliday junction DNA helicase | 0.47 | RR42_RS24180 | | 3-isopropylmalate dehydratase | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.42 | CSW01_09250 | | crossover junction endodeoxyribonuclease RuvC | 0.43 | CSW01_12610 | | 3-isopropylmalate dehydratase small subunit | low | > 62 |
| Paraburkholderia sabiae LMG 24235 | 0.41 | QEN71_RS26785 | | crossover junction endodeoxyribonuclease RuvC | 0.45 | QEN71_RS17615 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Rhodopseudomonas palustris CGA009 | 0.41 | TX73_005650 | | crossover junction endodeoxyribonuclease RuvC | 0.58 | TX73_001215 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Ralstonia solanacearum UW163 | 0.41 | UW163_RS01905 | | crossover junction endodeoxyribonuclease RuvC | 0.46 | UW163_RS11110 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.41 | RALBFv3_RS11680 | | crossover junction endodeoxyribonuclease RuvC | 0.46 | RALBFv3_RS02615 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.41 | H281DRAFT_04253 | | Holliday junction endonuclease RuvC | 0.45 | H281DRAFT_06073 | | 3-isopropylmalate dehydratase, small subunit | — | — |
| Ralstonia sp. UNC404CL21Col | 0.40 | ABZR87_RS07635 | | crossover junction endodeoxyribonuclease RuvC | 0.47 | ABZR87_RS14535 | | 3-isopropylmalate dehydratase small subunit | low | > 80 |
| Agrobacterium fabrum C58 | 0.40 | Atu3724 | | Holliday junction resolvase | 0.61 | Atu2790 | | 3-isopropylmalate dehydratase, small subunit | — | — |
| Burkholderia phytofirmans PsJN | 0.40 | BPHYT_RS16605 | | crossover junction endodeoxyribonuclease RuvC | 0.44 | BPHYT_RS33905 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Rhizobium sp. OAE497 | 0.40 | ABIE40_RS15730 | | crossover junction endodeoxyribonuclease RuvC | 0.59 | ABIE40_RS19040 | | 3-isopropylmalate dehydratase small subunit | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.40 | SMc03967 | | Holliday junction resolvase | 0.60 | SMc03795 | | isopropylmalate isomerase small subunit | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.40 | ABIE53_003493 | | crossover junction endodeoxyribonuclease RuvC | 0.43 | ABIE53_004803 | | 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit | — | — |
| Ralstonia solanacearum GMI1000 | 0.40 | RS_RS02500 | | crossover junction endodeoxyribonuclease RuvC | 0.46 | RS_RS09995 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Ralstonia solanacearum PSI07 | 0.40 | RPSI07_RS21535 | | crossover junction endodeoxyribonuclease RuvC | 0.46 | RPSI07_RS14700 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Dinoroseobacter shibae DFL-12 | 0.39 | Dshi_1103 | | crossover junction endodeoxyribonuclease RuvC (RefSeq) | 0.58 | Dshi_0083 | | 3-isopropylmalate dehydratase, small subunit (RefSeq) | — | — |
| Acidovorax sp. GW101-3H11 | 0.38 | Ac3H11_4050 | | Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) | 0.44 | Ac3H11_1527 | | 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.38 | Ga0059261_0822 | | Holliday junction endonuclease RuvC (EC 3.1.22.4) | 0.40 | Ga0059261_4225 | | 3-isopropylmalate dehydratase, small subunit | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.37 | GFF572 | | Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) | 0.46 | GFF3361 | | 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.37 | PGA1_c05850 | | crossover junction endodeoxyribonuclease RuvC | 0.57 | PGA1_c29790 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Pseudomonas simiae WCS417 | 0.37 | PS417_22455 | | crossover junction endodeoxyribonuclease RuvC | 0.48 | PS417_18595 | | 3-isopropylmalate dehydratase | — | — |
| Pseudomonas stutzeri RCH2 | 0.36 | Psest_1495 | | crossover junction endodeoxyribonuclease RuvC | 0.49 | Psest_2590 | | 3-isopropylmalate dehydratase, small subunit | — | — |
| Variovorax sp. SCN45 | 0.36 | GFF4462 | | Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) | 0.46 | GFF3889 | | 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) | low | > 127 |
| Pseudomonas fluorescens SBW25 | 0.36 | PFLU_RS24095 | | crossover junction endodeoxyribonuclease RuvC | 0.48 | PFLU_RS20575 | | 3-isopropylmalate dehydratase small subunit | low | > 109 |
| Variovorax sp. OAS795 | 0.36 | ABID97_RS06275 | | crossover junction endodeoxyribonuclease RuvC | 0.45 | ABID97_RS08460 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.36 | PFLU_RS24095 | | crossover junction endodeoxyribonuclease RuvC | 0.48 | PFLU_RS20575 | | 3-isopropylmalate dehydratase small subunit | low | > 109 |
| Pseudomonas sp. RS175 | 0.36 | PFR28_03414 | | Crossover junction endodeoxyribonuclease RuvC | 0.48 | PFR28_02823 | | 3-isopropylmalate dehydratase small subunit 1 | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.36 | Pf6N2E2_5535 | | Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) | 0.49 | Pf6N2E2_64 | | 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) | — | — |
| Marinobacter adhaerens HP15 | 0.36 | HP15_2042 | | crossover junction endodeoxyribonuclease RuvC | 0.47 | HP15_1833 | | isopropylmalate isomerase small subunit | — | — |
| Pseudomonas sp. S08-1 | 0.36 | OH686_19125 | | crossover junction endodeoxyribonuclease RuvC | 0.48 | OH686_04475 | | 3-isopropylmalate dehydratase small subunit | low | > 80 |
| Shewanella loihica PV-4 | 0.36 | Shew_2077 | | crossover junction endodeoxyribonuclease RuvC (RefSeq) | 0.47 | Shew_3469 | | isopropylmalate isomerase small subunit (RefSeq) | low | > 60 |
| Pseudomonas fluorescens FW300-N2C3 | 0.36 | AO356_18015 | | crossover junction endodeoxyribonuclease RuvC | 0.50 | AO356_21405 | | 3-isopropylmalate dehydratase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.36 | HSERO_RS02080 | | Holliday junction resolvase | 0.43 | HSERO_RS16505 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.35 | AO353_03590 | | crossover junction endodeoxyribonuclease RuvC | 0.49 | AO353_20625 | | 3-isopropylmalate dehydratase | low | > 101 |
| Dyella japonica UNC79MFTsu3.2 | 0.35 | ABZR86_RS10845 | | crossover junction endodeoxyribonuclease RuvC | 0.42 | ABZR86_RS15955 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Alteromonas macleodii MIT1002 | 0.35 | MIT1002_01331 | | Crossover junction endodeoxyribonuclease RuvC | 0.45 | MIT1002_00946 | | 3-isopropylmalate dehydratase small subunit 1 | — | — |
| Shewanella amazonensis SB2B | 0.35 | Sama_1841 | ruvC | Holliday junction resolvase (RefSeq) | 0.46 | Sama_0338 | leuD | isopropylmalate isomerase small subunit (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.35 | SO2431 | ruvC | crossover junction endodeoxyribonuclease RuvC (NCBI ptt file) | 0.46 | SO4233 | leuD | 3-isopropylmalate dehydratase, small subunit (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.35 | Shewana3_1955 | ruvC | Holliday junction resolvase (RefSeq) | 0.46 | Shewana3_3758 | leuD | isopropylmalate isomerase small subunit (RefSeq) | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.35 | Pf1N1B4_639 | | Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) | 0.49 | Pf1N1B4_14 | | 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.34 | Psyr_1408 | | Holliday junction endonuclease RuvC | 0.50 | Psyr_1984 | | 3-isopropylmalate dehydratase, small subunit | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.34 | Psyr_1408 | | Holliday junction endonuclease RuvC | 0.50 | Psyr_1984 | | 3-isopropylmalate dehydratase, small subunit | 0.41 | 40 |
| Rhodanobacter sp. FW510-T8 | 0.34 | OKGIIK_01835 | ruvC | crossover junction endodeoxyribonuclease RuvC | 0.40 | OKGIIK_13590 | leuD | 3-isopropylmalate dehydratase small subunit | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.34 | Xcc-8004.1435.1 | | Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) | 0.46 | Xcc-8004.1050.1 | | 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) | — | — |
| Acinetobacter radioresistens SK82 | 0.33 | MPMX26_01780 | | Crossover junction endodeoxyribonuclease RuvC | 0.46 | MPMX26_00346 | | 3-isopropylmalate dehydratase small subunit 1 | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.33 | LRK54_RS04915 | | crossover junction endodeoxyribonuclease RuvC | 0.40 | LRK54_RS10330 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Rhodanobacter denitrificans MT42 | 0.33 | LRK55_RS04695 | | crossover junction endodeoxyribonuclease RuvC | 0.40 | LRK55_RS09970 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Kangiella aquimarina DSM 16071 | 0.32 | B158DRAFT_1124 | | Holliday junction endonuclease RuvC (EC 3.1.22.4) | 0.49 | B158DRAFT_1320 | | 3-isopropylmalate dehydratase, small subunit | low | > 40 |
| Pseudomonas putida KT2440 | 0.32 | PP_1215 | | Crossover junction endodeoxyribonuclease RuvC | 0.49 | PP_1986 | | 3-isopropylmalate dehydratase small subunit | low | > 96 |
| Serratia liquefaciens MT49 | 0.32 | IAI46_14630 | | crossover junction endodeoxyribonuclease RuvC | 0.45 | IAI46_03340 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Pectobacterium carotovorum WPP14 | 0.32 | HER17_RS11850 | | crossover junction endodeoxyribonuclease RuvC | 0.45 | HER17_RS03070 | | 3-isopropylmalate dehydratase small subunit | low | > 75 |
| Castellaniella sp019104865 MT123 | 0.32 | ABCV34_RS07975 | | crossover junction endodeoxyribonuclease RuvC | 0.47 | ABCV34_RS04285 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Dickeya dianthicola ME23 | 0.32 | DZA65_RS10515 | | crossover junction endodeoxyribonuclease RuvC | 0.44 | DZA65_RS19215 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Dickeya dianthicola 67-19 | 0.32 | HGI48_RS10100 | | crossover junction endodeoxyribonuclease RuvC | 0.44 | HGI48_RS18070 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Dickeya dadantii 3937 | 0.31 | DDA3937_RS10070 | | crossover junction endodeoxyribonuclease RuvC | 0.44 | DDA3937_RS18130 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Rahnella sp. WP5 | 0.31 | EX31_RS11680 | | crossover junction endodeoxyribonuclease RuvC | 0.44 | EX31_RS03695 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.31 | GFF1644 | | Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) | 0.43 | GFF167 | | 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) | — | — |
| Pantoea sp. MT58 | 0.31 | IAI47_08440 | | crossover junction endodeoxyribonuclease RuvC | 0.45 | IAI47_16015 | | 3-isopropylmalate dehydratase small subunit | low | > 76 |
| Enterobacter asburiae PDN3 | 0.31 | EX28DRAFT_0694 | | Holliday junction endonuclease RuvC (EC 3.1.22.4) | 0.45 | EX28DRAFT_3667 | | 3-isopropylmalate dehydratase, small subunit | — | — |
| Escherichia coli ECRC98 | 0.30 | JDDGAC_00840 | ruvC | crossover junction endodeoxyribonuclease RuvC | 0.41 | JDDGAC_14325 | leuD | 3-isopropylmalate dehydratase small subunit | low | > 86 |
| Escherichia coli ECRC100 | 0.30 | OKFHMN_26265 | ruvC | crossover junction endodeoxyribonuclease RuvC | 0.41 | OKFHMN_10730 | leuD | 3-isopropylmalate dehydratase small subunit | — | — |
| Enterobacter sp. TBS_079 | 0.30 | MPMX20_02768 | | Crossover junction endodeoxyribonuclease RuvC | 0.44 | MPMX20_03498 | | 3-isopropylmalate dehydratase small subunit 1 | low | > 85 |
| Escherichia coli ECRC62 | 0.30 | BNILDI_15500 | ruvC | crossover junction endodeoxyribonuclease RuvC | 0.42 | BNILDI_08535 | leuD | 3-isopropylmalate dehydratase small subunit | — | — |
| Escherichia coli BL21 | 0.30 | ECD_01834 | | component of RuvABC resolvasome, endonuclease | 0.42 | ECD_00073 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.30 | OHPLBJKB_01865 | | Crossover junction endodeoxyribonuclease RuvC | 0.42 | OHPLBJKB_03586 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Escherichia coli Nissle 1917 | 0.30 | ECOLIN_RS10375 | | crossover junction endodeoxyribonuclease RuvC | 0.42 | ECOLIN_RS00385 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Escherichia coli ECRC101 | 0.30 | MCAODC_19140 | ruvC | crossover junction endodeoxyribonuclease RuvC | 0.41 | MCAODC_01245 | leuD | 3-isopropylmalate dehydratase small subunit | — | — |
| Escherichia coli ECOR27 | 0.30 | NOLOHH_16710 | ruvC | crossover junction endodeoxyribonuclease RuvC | 0.42 | NOLOHH_03075 | leuD | 3-isopropylmalate dehydratase small subunit | — | — |
| Klebsiella michiganensis M5al | 0.30 | BWI76_RS18155 | | crossover junction endodeoxyribonuclease RuvC | 0.43 | BWI76_RS04665 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Escherichia coli ECRC102 | 0.30 | NIAGMN_01795 | ruvC | crossover junction endodeoxyribonuclease RuvC | 0.41 | NIAGMN_08580 | leuD | 3-isopropylmalate dehydratase small subunit | — | — |
| Escherichia coli ECOR38 | 0.30 | HEPCGN_04675 | ruvC | crossover junction endodeoxyribonuclease RuvC | 0.42 | HEPCGN_08710 | leuD | 3-isopropylmalate dehydratase small subunit | low | > 87 |
| Escherichia coli ECRC99 | 0.30 | KEDOAH_01840 | ruvC | crossover junction endodeoxyribonuclease RuvC | 0.41 | KEDOAH_17425 | leuD | 3-isopropylmalate dehydratase small subunit | — | — |
| Escherichia fergusonii Becca | 0.30 | EFB2_02079 | | Crossover junction endodeoxyribonuclease RuvC | 0.42 | EFB2_03974 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Erwinia tracheiphila SCR3 | 0.30 | LU632_RS13420 | ruvC | crossover junction endodeoxyribonuclease RuvC | 0.43 | LU632_RS02865 | leuD | 3-isopropylmalate dehydratase small subunit | — | — |
| Escherichia coli BW25113 | 0.30 | b1863 | ruvC | Holliday junction resolvase (NCBI) | 0.42 | b0071 | leuD | isopropylmalate isomerase small subunit (NCBI) | low | > 76 |
| Lysobacter sp. OAE881 | 0.30 | ABIE51_RS05040 | | crossover junction endodeoxyribonuclease RuvC | 0.37 | ABIE51_RS17580 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.29 | CA264_03880 | | crossover junction endodeoxyribonuclease RuvC | 0.42 | CA264_09440 | | 3-isopropylmalate dehydratase small subunit | — | — |
| Bacteroides ovatus ATCC 8483 | 0.28 | BACOVA_04396 | | crossover junction endodeoxyribonuclease RuvC | 0.35 | BACOVA_04602 | | 3-isopropylmalate dehydratase, small subunit | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.28 | BT_1664 | ruvC | Holliday junction resolvase (RefSeq) | 0.34 | BT1859 | | 3-isopropylmalate dehydratase small subunit (NCBI ptt file) | — | — |
| Parabacteroides merdae CL09T00C40 | 0.28 | HMPREF1078_RS13315 | | crossover junction endodeoxyribonuclease RuvC | 0.39 | HMPREF1078_RS16655 | | 3-isopropylmalate dehydratase small subunit | low | > 61 |
| Mycobacterium tuberculosis H37Rv | 0.21 | Rv2594c | | Probable crossover junction endodeoxyribonuclease RuvC (holliday junction nuclease) (holliday junction resolvase) | 0.31 | Rv2987c | | Probable 3-isopropylmalate dehydratase (small subunit) LeuD (isopropylmalate isomerase) (alpha-IPM isomerase) (IPMI) | — | — |
Not shown: 3 genomes with orthologs for CCNA_03346 only; 11 genomes with orthologs for CCNA_00195 only