| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pontibacter actiniarum KMM 6156, DSM 19842 | 1.0 | CA264_17545 | | single-stranded-DNA-specific exonuclease RecJ | 1.0 | CA264_16350 | | excinuclease ABC subunit C | 0.44 | 17 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.55 | CA265_RS25225 | | single-stranded-DNA-specific exonuclease RecJ | 0.55 | CA265_RS18110 | | excinuclease ABC subunit C | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.55 | Echvi_1332 | | single-stranded-DNA-specific exonuclease RecJ | 0.53 | Echvi_0619 | | excinuclease ABC, C subunit | low | > 79 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.54 | ABZR88_RS18635 | | single-stranded-DNA-specific exonuclease RecJ | 0.53 | ABZR88_RS04150 | | excinuclease ABC subunit UvrC | low | > 71 |
| Parabacteroides merdae CL09T00C40 | 0.51 | HMPREF1078_RS07725 | | single-stranded-DNA-specific exonuclease RecJ | 0.46 | HMPREF1078_RS06310 | | excinuclease ABC subunit UvrC | low | > 61 |
| Bacteroides stercoris CC31F | 0.50 | HMPREF1181_RS06545 | | single-stranded-DNA-specific exonuclease RecJ | 0.45 | HMPREF1181_RS02095 | | excinuclease ABC subunit UvrC | low | > 56 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.49 | BT3939 | | single-stranded-DNA-specific exonuclease recJ (NCBI ptt file) | 0.44 | BT3266 | | excinuclease ABC subunit C (NCBI ptt file) | — | — |
| Bacteroides ovatus ATCC 8483 | 0.49 | BACOVA_01165 | | single-stranded-DNA-specific exonuclease RecJ | 0.44 | BACOVA_01365 | | excinuclease ABC, C subunit | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.48 | HMPREF1058_RS14835 | | single-stranded-DNA-specific exonuclease RecJ | 0.44 | HMPREF1058_RS11525 | | excinuclease ABC subunit UvrC | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.48 | ABI39_RS10550 | | single-stranded-DNA-specific exonuclease RecJ | 0.44 | ABI39_RS05415 | | excinuclease ABC subunit UvrC | — | — |
| Synechococcus elongatus PCC 7942 | 0.27 | Synpcc7942_1886 | recJ | exonuclease RecJ | 0.25 | Synpcc7942_1945 | uvrC | excinuclease ABC subunit C | low | > 38 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.26 | DVU0904 | recJ | single-stranded-DNA-specific exonuclease RecJ (TIGR) | 0.19 | DVU0801 | uvrC | excinuclease ABC, C subunit (TIGR) | low | > 55 |
| Acinetobacter radioresistens SK82 | 0.25 | MPMX26_02917 | | Single-stranded-DNA-specific exonuclease RecJ | 0.23 | MPMX26_00228 | | UvrABC system protein C | low | > 36 |
| Cupriavidus basilensis FW507-4G11 | 0.24 | RR42_RS06090 | | single-stranded DNA exonuclease | 0.21 | RR42_RS14000 | | excinuclease ABC subunit C | 0.82 | 2 |
| Pseudomonas simiae WCS417 | 0.24 | PS417_22855 | | ssDNA exonuclease RecJ | 0.25 | PS417_10725 | | excinuclease ABC subunit C | 0.28 | 87 |
| Vibrio cholerae E7946 ATCC 55056 | 0.24 | CSW01_12240 | | single-stranded-DNA-specific exonuclease RecJ | 0.23 | CSW01_06140 | | excinuclease ABC subunit C | low | > 62 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.24 | Psyr_1298 | | exonuclease RecJ | 0.25 | Psyr_2896 | | Excinuclease ABC subunit C | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.24 | Psyr_1298 | | exonuclease RecJ | 0.25 | Psyr_2896 | | Excinuclease ABC subunit C | low | > 86 |
| Alteromonas macleodii MIT1002 | 0.24 | MIT1002_00788 | | Single-stranded-DNA-specific exonuclease RecJ | 0.23 | MIT1002_02153 | | Excinuclease ABC subunit C | low | > 70 |
| Pseudomonas putida KT2440 | 0.24 | PP_1477 | | ssDNA-specific exonuclease RecJ | 0.26 | PP_4098 | | UvrABC system protein C | low | > 96 |
| Pseudomonas fluorescens SBW25-INTG | 0.24 | PFLU_RS24515 | | single-stranded-DNA-specific exonuclease RecJ | 0.25 | PFLU_RS10770 | | excinuclease ABC subunit UvrC | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.24 | AO356_06345 | | single-stranded-DNA-specific exonuclease RecJ | 0.24 | AO356_00350 | | excinuclease ABC subunit C | 0.28 | 19 |
| Pseudomonas fluorescens SBW25 | 0.24 | PFLU_RS24515 | | single-stranded-DNA-specific exonuclease RecJ | 0.25 | PFLU_RS10770 | | excinuclease ABC subunit UvrC | low | > 109 |
| Pseudomonas fluorescens FW300-N2E2 | 0.24 | Pf6N2E2_3137 | | Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) | 0.23 | Pf6N2E2_2021 | | Excinuclease ABC subunit C | 0.57 | 5 |
| Pseudomonas sp. RS175 | 0.24 | PFR28_00339 | | Single-stranded-DNA-specific exonuclease RecJ | 0.23 | PFR28_01411 | | UvrABC system protein C | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.24 | Pf1N1B4_3020 | | Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) | 0.25 | Pf1N1B4_5618 | | Excinuclease ABC subunit C | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.24 | PfGW456L13_1730 | | Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) | 0.24 | PfGW456L13_2886 | | Excinuclease ABC subunit C | 0.31 | 38 |
| Kangiella aquimarina DSM 16071 | 0.24 | B158DRAFT_2268 | | single-stranded-DNA-specific exonuclease RecJ | 0.26 | B158DRAFT_1273 | | Excinuclease ABC subunit C | low | > 40 |
| Shewanella oneidensis MR-1 | 0.24 | SO0952 | recJ | single-stranded-DNA-specific exonuclease RecJ (NCBI ptt file) | 0.21 | SO1861 | uvrC | excinuclease ABC, C subunit (NCBI ptt file) | 0.68 | 2 |
| Dickeya dianthicola ME23 | 0.23 | DZA65_RS03495 | | single-stranded-DNA-specific exonuclease RecJ | 0.22 | DZA65_RS14285 | | excinuclease ABC subunit UvrC | low | > 75 |
| Pseudomonas fluorescens FW300-N2E3 | 0.23 | AO353_04320 | | single-stranded-DNA-specific exonuclease RecJ | 0.24 | AO353_21835 | | excinuclease ABC subunit C | 0.47 | 10 |
| Azospirillum sp. SherDot2 | 0.23 | MPMX19_00667 | | Single-stranded-DNA-specific exonuclease RecJ | 0.22 | MPMX19_01070 | | UvrABC system protein C | — | — |
| Dickeya dianthicola 67-19 | 0.23 | HGI48_RS03450 | | single-stranded-DNA-specific exonuclease RecJ | 0.22 | HGI48_RS13795 | | excinuclease ABC subunit UvrC | low | > 71 |
| Marinobacter adhaerens HP15 | 0.23 | HP15_766 | | bacterial RecJ exonuclease | 0.23 | HP15_1568 | | excinuclease ABC subunit C | 0.65 | 12 |
| Escherichia coli ECOR38 | 0.23 | HEPCGN_18870 | recJ | single-stranded-DNA-specific exonuclease RecJ | 0.23 | HEPCGN_04180 | uvrC | excinuclease ABC subunit UvrC | low | > 85 |
| Escherichia coli BW25113 | 0.23 | b2892 | recJ | ssDNA exonuclease, 5' --> 3'-specific (NCBI) | 0.23 | b1913 | uvrC | excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) | 0.36 | 28 |
| Shewanella loihica PV-4 | 0.23 | Shew_0772 | | single-stranded-DNA-specific exonuclease RecJ (RefSeq) | 0.22 | Shew_1825 | uvrC | excinuclease ABC subunit C (RefSeq) | 0.83 | 1 |
| Escherichia coli BL21 | 0.23 | ECD_02724 | | ssDNA exonuclease, 5 | 0.23 | ECD_01878 | | excinuclease UvrABC, endonuclease subunit | low | > 60 |
| Escherichia coli ECOR27 | 0.23 | NOLOHH_11505 | recJ | single-stranded-DNA-specific exonuclease RecJ | 0.23 | NOLOHH_16445 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Escherichia coli ECRC62 | 0.23 | BNILDI_10035 | recJ | single-stranded-DNA-specific exonuclease RecJ | 0.23 | BNILDI_15235 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Escherichia coli Nissle 1917 | 0.23 | ECOLIN_RS16115 | | single-stranded-DNA-specific exonuclease RecJ | 0.23 | ECOLIN_RS10895 | | excinuclease ABC subunit UvrC | low | > 52 |
| Pseudomonas sp. S08-1 | 0.23 | OH686_06955 | | single-stranded-DNA-specific exonuclease RecJ | 0.26 | OH686_00340 | | excinuclease ABC subunit C | low | > 80 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.23 | GFF2989 | | Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) | 0.23 | GFF1700 | | Excinuclease ABC subunit C | low | > 78 |
| Escherichia coli ECRC102 | 0.23 | NIAGMN_17345 | recJ | single-stranded-DNA-specific exonuclease RecJ | 0.23 | NIAGMN_02225 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Escherichia fergusonii Becca | 0.23 | EFB2_01009 | | Single-stranded-DNA-specific exonuclease RecJ | 0.23 | EFB2_02033 | | UvrABC system protein C | 0.46 | 81 |
| Escherichia coli ECRC99 | 0.23 | KEDOAH_08560 | recJ | single-stranded-DNA-specific exonuclease RecJ | 0.23 | KEDOAH_02265 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Dickeya dadantii 3937 | 0.23 | DDA3937_RS03310 | | single-stranded-DNA-specific exonuclease RecJ | 0.22 | DDA3937_RS13700 | | excinuclease ABC subunit UvrC | low | > 74 |
| Escherichia coli ECRC101 | 0.23 | MCAODC_10100 | recJ | single-stranded-DNA-specific exonuclease RecJ | 0.23 | MCAODC_19565 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Escherichia coli ECRC101 | 0.23 | OKFHMN_19580 | recJ | single-stranded-DNA-specific exonuclease RecJ | 0.23 | OKFHMN_25825 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Escherichia coli ECRC98 | 0.23 | JDDGAC_23220 | recJ | single-stranded-DNA-specific exonuclease RecJ | 0.23 | JDDGAC_00415 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Magnetospirillum magneticum AMB-1 | 0.23 | AMB_RS18875 | | single-stranded-DNA-specific exonuclease RecJ | 0.21 | AMB_RS19240 | | UvrABC system protein C | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.23 | OHPLBJKB_00823 | | Single-stranded-DNA-specific exonuclease RecJ | 0.23 | OHPLBJKB_01816 | | UvrABC system protein C | low | > 73 |
| Serratia liquefaciens MT49 | 0.23 | IAI46_20720 | | single-stranded-DNA-specific exonuclease RecJ | 0.23 | IAI46_09210 | | excinuclease ABC subunit UvrC | 0.86 | 1 |
| Rhodospirillum rubrum S1H | 0.23 | Rru_A2408 | | RecJ exonuclease (NCBI) | 0.21 | Rru_A2220 | | Excinuclease ABC, C subunit (NCBI) | — | — |
| Agrobacterium fabrum C58 | 0.23 | Atu1586 | | single-stranded-DNA-specific exonuclease | 0.22 | Atu1129 | | excinuclease ABC chain C | — | — |
| Herbaspirillum seropedicae SmR1 | 0.23 | HSERO_RS13965 | | single-stranded DNA exonuclease | 0.23 | HSERO_RS09690 | | excinuclease ABC subunit C | 0.36 | 22 |
| Shewanella sp. ANA-3 | 0.23 | Shewana3_3329 | | single-stranded-DNA-specific exonuclease RecJ (RefSeq) | 0.22 | Shewana3_1609 | uvrC | excinuclease ABC subunit C (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.22 | Sama_2737 | | single-stranded-DNA-specific exonuclease RecJ (RefSeq) | 0.22 | Sama_1608 | uvrC | excinuclease ABC subunit C (RefSeq) | 0.73 | 6 |
| Pectobacterium carotovorum WPP14 | 0.22 | HER17_RS17880 | | single-stranded-DNA-specific exonuclease RecJ | 0.22 | HER17_RS07715 | | excinuclease ABC subunit UvrC | low | > 75 |
| Caulobacter crescentus NA1000 | 0.22 | CCNA_01450 | | single-stranded-DNA-specific exonuclease recJ | 0.20 | CCNA_02975 | | excinuclease ABC subunit C | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.22 | CCNA_01450 | | single-stranded-DNA-specific exonuclease recJ | 0.20 | CCNA_02975 | | excinuclease ABC subunit C | — | — |
| Rhizobium sp. OAE497 | 0.22 | ABIE40_RS08655 | | single-stranded-DNA-specific exonuclease RecJ | 0.22 | ABIE40_RS06500 | | excinuclease ABC subunit UvrC | — | — |
| Pantoea sp. MT58 | 0.22 | IAI47_03830 | | single-stranded-DNA-specific exonuclease RecJ | 0.23 | IAI47_12465 | | excinuclease ABC subunit UvrC | low | > 76 |
| Rahnella sp. WP5 | 0.22 | EX31_RS13470 | | single-stranded-DNA-specific exonuclease RecJ | 0.23 | EX31_RS24150 | | excinuclease ABC subunit UvrC | low | > 89 |
| Enterobacter asburiae PDN3 | 0.22 | EX28DRAFT_2943 | | single-stranded-DNA-specific exonuclease RecJ | 0.23 | EX28DRAFT_0634 | | Excinuclease ABC subunit C | low | > 76 |
| Dinoroseobacter shibae DFL-12 | 0.22 | Dshi_2275 | | single-stranded-DNA-specific exonuclease RecJ (RefSeq) | 0.21 | Dshi_0644 | | excinuclease ABC, C subunit (RefSeq) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.22 | PGA1_c08630 | | single-stranded-DNA-specific exonuclease RecJ | 0.20 | PGA1_c02880 | | uvrABC system protein C | — | — |
| Pseudomonas stutzeri RCH2 | 0.22 | Psest_1544 | | single-stranded-DNA-specific exonuclease RecJ | 0.25 | Psest_2259 | | excinuclease ABC, C subunit | 0.42 | 6 |
| Enterobacter sp. TBS_079 | 0.22 | MPMX20_03751 | | Single-stranded-DNA-specific exonuclease RecJ | 0.23 | MPMX20_02838 | | UvrABC system protein C | 0.35 | 45 |
| Ralstonia solanacearum PSI07 | 0.22 | RPSI07_RS18620 | | single-stranded-DNA-specific exonuclease RecJ | 0.21 | RPSI07_RS18935 | | excinuclease ABC subunit UvrC | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.21 | RS_RS05550 | | single-stranded-DNA-specific exonuclease RecJ | 0.22 | RS_RS05305 | | excinuclease ABC subunit UvrC | low | > 80 |
| Ralstonia solanacearum UW163 | 0.21 | UW163_RS12210 | | single-stranded-DNA-specific exonuclease RecJ | 0.21 | UW163_RS11990 | | excinuclease ABC subunit UvrC | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.21 | RALBFv3_RS14740 | | single-stranded-DNA-specific exonuclease RecJ | 0.21 | RALBFv3_RS14525 | | excinuclease ABC subunit UvrC | low | > 76 |
| Dechlorosoma suillum PS | 0.21 | Dsui_2860 | | single-stranded-DNA-specific exonuclease RecJ | 0.24 | Dsui_2470 | | excinuclease ABC, C subunit | — | — |
| Erwinia tracheiphila SCR3 | 0.21 | LU632_RS05985 | recJ | single-stranded-DNA-specific exonuclease RecJ | 0.23 | LU632_RS10195 | uvrC | excinuclease ABC subunit UvrC | low | > 74 |
| Klebsiella michiganensis M5al | 0.21 | BWI76_RS23805 | | ssDNA exonuclease RecJ | 0.23 | BWI76_RS18330 | | excinuclease ABC subunit C | low | > 92 |
| Castellaniella sp019104865 MT123 | 0.21 | ABCV34_RS05005 | | single-stranded-DNA-specific exonuclease RecJ | 0.21 | ABCV34_RS06980 | | excinuclease ABC subunit UvrC | low | > 48 |
| Ralstonia sp. UNC404CL21Col | 0.21 | ABZR87_RS10395 | | single-stranded-DNA-specific exonuclease RecJ | 0.21 | ABZR87_RS10245 | | excinuclease ABC subunit UvrC | 0.56 | 43 |
| Rhodopseudomonas palustris CGA009 | 0.20 | TX73_012960 | | single-stranded-DNA-specific exonuclease RecJ | 0.22 | TX73_006010 | | excinuclease ABC subunit UvrC | — | — |
| Variovorax sp. SCN45 | 0.20 | GFF6700 | | Single-stranded-DNA-specific exonuclease RecJ | 0.22 | GFF2859 | | Excinuclease ABC subunit C | low | > 127 |
| Dyella japonica UNC79MFTsu3.2 | 0.19 | ABZR86_RS02800 | | single-stranded-DNA-specific exonuclease RecJ | 0.23 | ABZR86_RS02245 | | excinuclease ABC subunit UvrC | low | > 74 |
| Sinorhizobium meliloti 1021 | 0.19 | SMc00292 | | single-stranded-DNA-specific exonuclease | 0.22 | SMc00602 | | excinuclease ABC subunit C | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.19 | Xcc-8004.2909.1 | | Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) | 0.23 | Xcc-8004.2477.1 | | Excinuclease ABC subunit C | low | > 74 |
| Acidovorax sp. GW101-3H11 | 0.19 | Ac3H11_1746 | | Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) | 0.21 | Ac3H11_373 | | Excinuclease ABC subunit C | — | — |
| Variovorax sp. OAS795 | 0.19 | ABID97_RS22940 | | single-stranded-DNA-specific exonuclease RecJ | 0.21 | ABID97_RS10635 | | excinuclease ABC subunit UvrC | low | > 91 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.19 | GFF739 | | Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) | 0.21 | GFF3847 | | Excinuclease ABC subunit C | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.19 | Ga0059261_3089 | | single-stranded-DNA-specific exonuclease RecJ | 0.21 | Ga0059261_3186 | | Excinuclease ABC subunit C | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.19 | LRK54_RS00315 | | single-stranded-DNA-specific exonuclease RecJ | 0.24 | LRK54_RS00380 | | excinuclease ABC subunit UvrC | low | > 59 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.18 | A4249_RS05895 | | single-stranded-DNA-specific exonuclease RecJ | 0.21 | A4249_RS01670 | | excinuclease ABC subunit UvrC | — | — |
| Rhodanobacter sp. FW510-T8 | 0.17 | OKGIIK_06995 | recJ | single-stranded-DNA-specific exonuclease RecJ | 0.24 | OKGIIK_06930 | uvrC | excinuclease ABC subunit UvrC | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.17 | LRK55_RS18310 | | DHHA1 domain-containing protein | 0.24 | LRK55_RS00120 | | excinuclease ABC subunit UvrC | 0.65 | 49 |
Not shown: 6 genomes with orthologs for CA264_17545 only; 6 genomes with orthologs for CA264_16350 only