Conservation of cofitness between BWI76_RS00865 and BWI76_RS20995 in Klebsiella michiganensis M5al

90 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Klebsiella michiganensis M5al 1.0 BWI76_RS00865 DNA-binding transcriptional regulator OxyR 1.0 BWI76_RS20995 RNA degradosome polyphosphate kinase 0.31 9
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.98 GFF2347 Hydrogen peroxide-inducible genes activator 0.92 GFF2167 Polyphosphate kinase (EC 2.7.4.1) low > 78
Enterobacter asburiae PDN3 0.96 EX28DRAFT_4424 Transcriptional regulator 0.94 EX28DRAFT_0166 polyphosphate kinase 1 — —
Enterobacter sp. TBS_079 0.96 MPMX20_04519 Hydrogen peroxide-inducible genes activator 0.94 MPMX20_03356 Polyphosphate kinase low > 85
Escherichia coli ECRC102 0.96 NIAGMN_11315 oxyR DNA-binding transcriptional regulator OxyR 0.94 NIAGMN_19570 ppk1 polyphosphate kinase 1 — —
Escherichia coli ECRC101 0.96 MCAODC_04065 oxyR DNA-binding transcriptional regulator OxyR 0.94 MCAODC_12330 ppk1 polyphosphate kinase 1 low > 87
Escherichia coli BW25113 0.96 b3961 oxyR DNA-binding transcriptional dual regulator (NCBI) 0.94 b2501 ppk polyphosphate kinase (NCBI) low > 76
Escherichia coli ECOR38 0.96 HEPCGN_12210 oxyR DNA-binding transcriptional regulator OxyR 0.94 HEPCGN_20965 ppk1 polyphosphate kinase 1 low > 87
Escherichia coli ECRC62 0.96 BNILDI_05825 oxyR DNA-binding transcriptional regulator OxyR 0.94 BNILDI_12260 ppk1 polyphosphate kinase 1 low > 75
Escherichia coli BL21 0.96 ECD_03846 oxidative and nitrosative stress transcriptional regulator 0.94 ECD_02393 polyphosphate kinase, component of RNA degradosome low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.96 OHPLBJKB_04089 Hydrogen peroxide-inducible genes activator 0.94 OHPLBJKB_01225 Polyphosphate kinase low > 73
Escherichia coli ECRC100 0.96 OKFHMN_13565 oxyR DNA-binding transcriptional regulator OxyR 0.94 OKFHMN_21800 ppk1 polyphosphate kinase 1 low > 80
Escherichia coli ECRC98 0.96 JDDGAC_17190 oxyR DNA-binding transcriptional regulator OxyR 0.94 JDDGAC_25745 ppk1 polyphosphate kinase 1 low > 86
Escherichia coli Nissle 1917 0.96 ECOLIN_RS22870 DNA-binding transcriptional regulator OxyR 0.94 ECOLIN_RS14200 polyphosphate kinase 1 low > 55
Escherichia coli ECOR27 0.96 NOLOHH_05700 oxyR DNA-binding transcriptional regulator OxyR 0.94 NOLOHH_13450 ppk1 polyphosphate kinase 1 low > 75
Escherichia coli ECRC99 0.96 KEDOAH_14595 oxyR DNA-binding transcriptional regulator OxyR 0.94 KEDOAH_06420 ppk1 polyphosphate kinase 1 — —
Escherichia fergusonii Becca 0.96 EFB2_04651 Hydrogen peroxide-inducible genes activator 0.94 EFB2_01397 Polyphosphate kinase low > 86
Pectobacterium carotovorum WPP14 0.90 HER17_RS00955 DNA-binding transcriptional regulator OxyR 0.83 HER17_RS06425 polyphosphate kinase 1 low > 75
Dickeya dianthicola ME23 0.89 DZA65_RS21450 DNA-binding transcriptional regulator OxyR 0.83 DZA65_RS16045 polyphosphate kinase 1 0.47 23
Dickeya dianthicola 67-19 0.89 HGI48_RS20405 DNA-binding transcriptional regulator OxyR 0.83 HGI48_RS15225 polyphosphate kinase 1 low > 71
Dickeya dadantii 3937 0.89 DDA3937_RS00970 DNA-binding transcriptional regulator OxyR 0.83 DDA3937_RS15150 polyphosphate kinase 1 low > 74
Serratia liquefaciens MT49 0.88 IAI46_24475 DNA-binding transcriptional regulator OxyR 0.86 IAI46_18915 polyphosphate kinase 1 low > 86
Pantoea sp. MT58 0.88 IAI47_00930 DNA-binding transcriptional regulator OxyR 0.84 IAI47_05155 polyphosphate kinase 1 low > 76
Rahnella sp. WP5 0.88 EX31_RS14170 DNA-binding transcriptional regulator OxyR 0.86 EX31_RS22680 polyphosphate kinase 1 low > 89
Erwinia tracheiphila SCR3 0.87 LU632_RS19590 oxyR DNA-binding transcriptional regulator OxyR 0.86 LU632_RS08260 ppk1 polyphosphate kinase 1 low > 74
Vibrio cholerae E7946 ATCC 55056 0.63 CSW01_13340 DNA-binding transcriptional regulator OxyR 0.67 CSW01_03780 polyphosphate kinase 1 low > 62
Rhodanobacter denitrificans FW104-10B01 0.42 LRK54_RS04765 LysR substrate-binding domain-containing protein 0.30 LRK54_RS16000 polyphosphate kinase 1 low > 59
Rhodanobacter denitrificans MT42 0.42 LRK55_RS04545 LysR substrate-binding domain-containing protein 0.30 LRK55_RS15755 polyphosphate kinase 1 low > 63
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_01995 lysR DNA-binding transcriptional regulator OxyR 0.29 OKGIIK_08995 ppk1 RNA degradosome polyphosphate kinase low > 52
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.4224.1 Hydrogen peroxide-inducible genes activator 0.26 Xcc-8004.4064.1 Polyphosphate kinase (EC 2.7.4.1) low > 74
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS19355 DNA-binding transcriptional regulator OxyR 0.29 ABZR86_RS07490 polyphosphate kinase 1 low > 74
Lysobacter sp. OAE881 0.39 ABIE51_RS05475 LysR substrate-binding domain-containing protein 0.26 ABIE51_RS14230 polyphosphate kinase 1 low > 62
Rhodospirillum rubrum S1H 0.37 Rru_A0334 Transcriptional Regulator, LysR family (NCBI) 0.27 Rru_A2161 Polyphosphate kinase (NCBI) low > 58
Pseudomonas syringae pv. syringae B728a ΔmexB 0.36 Psyr_0202 transcriptional regulator, LysR family 0.29 Psyr_0293 Polyphosphate kinase low > 86
Pseudomonas syringae pv. syringae B728a 0.36 Psyr_0202 transcriptional regulator, LysR family 0.29 Psyr_0293 Polyphosphate kinase low > 86
Pseudomonas putida KT2440 0.36 PP_5309 oxidative and nitrosative stress transcriptional dual regulator 0.29 PP_5217 Polyphosphate kinase low > 96
Pseudomonas stutzeri RCH2 0.36 Psest_4191 Transcriptional regulator 0.28 Psest_3732 polyphosphate kinase 1 low > 67
Castellaniella sp019104865 MT123 0.36 ABCV34_RS03575 LysR substrate-binding domain-containing protein 0.24 ABCV34_RS15580 polyphosphate kinase 1 low > 48
Herbaspirillum seropedicae SmR1 0.36 HSERO_RS18935 LysR family transcriptional regulator 0.28 HSERO_RS06305 polyphosphate kinase low > 78
Pseudomonas fluorescens FW300-N2E2 0.36 Pf6N2E2_4353 Hydrogen peroxide-inducible genes activator 0.29 Pf6N2E2_4453 Polyphosphate kinase (EC 2.7.4.1) low > 103
Azospirillum brasilense Sp245 0.35 AZOBR_RS31340 LysR family transcriptional regulator 0.28 AZOBR_RS16235 polyphosphate kinase 0.29 17
Azospirillum sp. SherDot2 0.35 MPMX19_04930 Hydrogen peroxide-inducible genes activator 0.28 MPMX19_01149 Polyphosphate kinase low > 112
Pseudomonas sp. S08-1 0.35 OH686_13510 Hydrogen peroxide-inducible genes activator 0.29 OH686_13995 polyphosphate kinase 1 low > 80
Pseudomonas simiae WCS417 0.35 PS417_27865 LysR family transcriptional regulator 0.29 PS417_27435 polyphosphate kinase low > 88
Paraburkholderia bryophila 376MFSha3.1 0.35 H281DRAFT_04673 transcriptional regulator, LysR family 0.26 H281DRAFT_04418 polyphosphate kinase low > 103
Ralstonia sp. UNC404CL21Col 0.35 ABZR87_RS01255 LysR substrate-binding domain-containing protein 0.28 ABZR87_RS14065 polyphosphate kinase 1 low > 80
Kangiella aquimarina DSM 16071 0.35 B158DRAFT_0567 Transcriptional regulator 0.27 B158DRAFT_2312 polyphosphate kinase 1 low > 40
Dechlorosoma suillum PS 0.34 Dsui_0823 transcriptional regulator 0.28 Dsui_2814 polyphosphate kinase 1 low > 51
Pseudomonas fluorescens SBW25 0.34 PFLU_RS29545 hydrogen peroxide-inducible genes activator 0.29 PFLU_RS29095 polyphosphate kinase 1 low > 109
Cupriavidus basilensis FW507-4G11 0.34 RR42_RS17385 LysR family transcriptional regulator 0.28 RR42_RS13435 polyphosphate kinase low > 128
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS29545 hydrogen peroxide-inducible genes activator 0.29 PFLU_RS29095 polyphosphate kinase 1 low > 109
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS05605 hydrogen peroxide-inducible genes activator 0.27 RALBFv3_RS02115 polyphosphate kinase 1 low > 76
Ralstonia solanacearum UW163 0.34 UW163_RS08020 hydrogen peroxide-inducible genes activator 0.27 UW163_RS15425 polyphosphate kinase 1 — —
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_12385 LysR family transcriptional regulator 0.29 AO356_12895 polyphosphate kinase low > 104
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS03470 LysR family transcriptional regulator 0.26 BPHYT_RS14110 polyphosphate kinase low > 109
Paraburkholderia sabiae LMG 24235 0.34 QEN71_RS26625 LysR substrate-binding domain-containing protein 0.26 QEN71_RS04860 polyphosphate kinase 1 low > 153
Pseudomonas sp. RS175 0.34 PFR28_04434 Hydrogen peroxide-inducible genes activator 0.29 PFR28_04345 Polyphosphate kinase low > 88
Ralstonia solanacearum PSI07 0.34 RPSI07_RS11690 hydrogen peroxide-inducible genes activator 0.27 RPSI07_RS15330 polyphosphate kinase 1 0.54 17
Ralstonia solanacearum GMI1000 0.34 RS_RS13470 hydrogen peroxide-inducible genes activator 0.27 RS_RS07705 polyphosphate kinase 1 0.56 77
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_773 Hydrogen peroxide-inducible genes activator 0.29 PfGW456L13_874 Polyphosphate kinase (EC 2.7.4.1) low > 87
Paraburkholderia graminis OAS925 0.34 ABIE53_000834 LysR family hydrogen peroxide-inducible transcriptional activator 0.26 ABIE53_002988 polyphosphate kinase low > 113
Pseudomonas fluorescens FW300-N1B4 0.34 Pf1N1B4_2106 Hydrogen peroxide-inducible genes activator 0.29 Pf1N1B4_2208 Polyphosphate kinase (EC 2.7.4.1) low > 87
Rhodopseudomonas palustris CGA009 0.34 TX73_002235 LysR substrate-binding domain-containing protein 0.28 TX73_015770 RNA degradosome polyphosphate kinase low > 86
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_09315 LysR family transcriptional regulator 0.29 AO353_08885 polyphosphate kinase low > 101
Sinorhizobium meliloti 1021 0.34 SMc00818 hydrogen peroxide-inducible genes activator (morphology and AUTO-aggregation control protein) 0.27 SMc00618 polyphosphate kinase low > 103
Marinobacter adhaerens HP15 0.33 HP15_308 oxidative stress regulatory protein OxyR 0.25 HP15_3334 polyphosphate kinase low > 73
Agrobacterium fabrum C58 0.33 Atu4641 LysR family transcriptional regulator 0.26 Atu1144 polyphosphate kinase — —
Phocaeicola dorei CL03T12C01 0.32 ABI39_RS06075 hydrogen peroxide-inducible genes activator 0.36 ABI39_RS14955 RNA degradosome polyphosphate kinase low > 72
Bacteroides thetaiotaomicron VPI-5482 0.32 BT4716 redox-sensitive transcriptional activator (NCBI ptt file) 0.37 BT0541 Polyphosphate kinase (NCBI ptt file) low > 81
Acidovorax sp. GW101-3H11 0.32 Ac3H11_784 Hydrogen peroxide-inducible genes activator 0.25 Ac3H11_452 Polyphosphate kinase (EC 2.7.4.1) 0.68 5
Bacteroides ovatus ATCC 8483 0.31 BACOVA_05567 LysR substrate binding domain protein 0.37 BACOVA_03769 polyphosphate kinase 1 low > 94
Caulobacter crescentus NA1000 Δfur 0.31 CCNA_03811 LysR-family transcriptional regulator 0.28 CCNA_01782 polyphosphate kinase 1 — —
Caulobacter crescentus NA1000 0.31 CCNA_03811 LysR-family transcriptional regulator 0.28 CCNA_01782 polyphosphate kinase 1 low > 66
Sphingomonas koreensis DSMZ 15582 0.30 Ga0059261_0159 Transcriptional regulator 0.28 Ga0059261_0225 polyphosphate kinase 1 low > 68
Bacteroides stercoris CC31F 0.30 HMPREF1181_RS02160 hydrogen peroxide-inducible genes activator 0.33 HMPREF1181_RS08035 RNA degradosome polyphosphate kinase low > 56
Magnetospirillum magneticum AMB-1 0.30 AMB_RS03045 hydrogen peroxide-inducible genes activator 0.28 AMB_RS14295 RNA degradosome polyphosphate kinase low > 64
Hydrogenophaga sp. GW460-11-11-14-LB1 0.30 GFF2803 Hydrogen peroxide-inducible genes activator 0.23 GFF4226 Polyphosphate kinase (EC 2.7.4.1) low > 90
Bosea sp. OAE506 0.29 ABIE41_RS01195 hydrogen peroxide-inducible genes activator 0.28 ABIE41_RS16125 RNA degradosome polyphosphate kinase low > 77
Echinicola vietnamensis KMM 6221, DSM 17526 0.29 Echvi_1045 Transcriptional regulator 0.26 Echvi_2996 polyphosphate kinase 1 low > 79
Rhizobium sp. OAE497 0.29 ABIE40_RS29270 LysR substrate-binding domain-containing protein 0.27 ABIE40_RS06575 RNA degradosome polyphosphate kinase low > 107
Parabacteroides merdae CL09T00C40 0.29 HMPREF1078_RS01140 hydrogen peroxide-inducible genes activator 0.35 HMPREF1078_RS16770 RNA degradosome polyphosphate kinase low > 61
Dinoroseobacter shibae DFL-12 0.29 Dshi_0727 transcriptional regulator, LysR family (RefSeq) 0.25 Dshi_0740 Polyphosphate kinase (RefSeq) low > 64
Mucilaginibacter yixingensis YX-36 DSM 26809 0.29 ABZR88_RS18535 hydrogen peroxide-inducible genes activator 0.40 ABZR88_RS04845 polyphosphate kinase 1 low > 71
Pontibacter actiniarum KMM 6156, DSM 19842 0.29 CA264_13765 DNA-binding transcriptional regulator OxyR 0.37 CA264_15725 polyphosphate kinase 1 low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.28 CA265_RS19680 DNA-binding transcriptional regulator OxyR 0.41 CA265_RS09830 polyphosphate kinase 1 low > 88
Acinetobacter radioresistens SK82 0.28 MPMX26_02334 Hydrogen peroxide-inducible genes activator 0.27 MPMX26_02335 Polyphosphate kinase low > 36
Alteromonas macleodii MIT1002 0.27 MIT1002_01120 Morphology and auto-aggregation control protein 0.52 MIT1002_00872 Polyphosphate kinase low > 70
Brevundimonas sp. GW460-12-10-14-LB2 0.26 A4249_RS12755 hydrogen peroxide-inducible genes activator 0.29 A4249_RS08195 RNA degradosome polyphosphate kinase — —
Shewanella sp. ANA-3 0.26 Shewana3_3046 LysR family transcriptional regulator (RefSeq) 0.55 Shewana3_2417 polyphosphate kinase (RefSeq) low > 73
Shewanella loihica PV-4 0.25 Shew_1035 LysR family transcriptional regulator (RefSeq) 0.55 Shew_3079 polyphosphate kinase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.24 Sama_0860 LysR family transcriptional regulator (RefSeq) 0.54 Sama_2011 polyphosphate kinase (RefSeq) low > 62

Not shown: 2 genomes with orthologs for BWI76_RS00865 only; 6 genomes with orthologs for BWI76_RS20995 only