Conservation of cofitness between BPHYT_RS16975 and BPHYT_RS33900 in Burkholderia phytofirmans PsJN

88 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS16975 shikimate 5-dehydrogenase 1.0 BPHYT_RS33900 3-isopropylmalate dehydrogenase 0.73 15
Paraburkholderia graminis OAS925 0.93 ABIE53_003560 shikimate dehydrogenase 0.98 ABIE53_004804 3-isopropylmalate dehydrogenase — —
Paraburkholderia bryophila 376MFSha3.1 0.90 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.98 H281DRAFT_06072 3-isopropylmalate dehydrogenase — —
Paraburkholderia sabiae LMG 24235 0.81 QEN71_RS27130 shikimate dehydrogenase 0.96 QEN71_RS17620 3-isopropylmalate dehydrogenase 0.56 90
Ralstonia solanacearum PSI07 0.55 RPSI07_RS11300 shikimate dehydrogenase 0.89 RPSI07_RS14705 3-isopropylmalate dehydrogenase 0.61 54
Ralstonia solanacearum UW163 0.54 UW163_RS07680 shikimate dehydrogenase 0.89 UW163_RS11115 3-isopropylmalate dehydrogenase — —
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS05945 shikimate dehydrogenase 0.89 RALBFv3_RS02610 3-isopropylmalate dehydrogenase 0.42 59
Ralstonia solanacearum GMI1000 0.54 RS_RS13890 shikimate dehydrogenase 0.89 RS_RS09990 3-isopropylmalate dehydrogenase low > 80
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS01605 shikimate dehydrogenase 0.89 ABZR87_RS14530 3-isopropylmalate dehydrogenase 0.64 13
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS01990 shikimate 5-dehydrogenase 0.86 HSERO_RS16500 3-isopropylmalate dehydrogenase 0.75 13
Cupriavidus basilensis FW507-4G11 0.51 RR42_RS17645 shikimate dehydrogenase 0.89 RR42_RS14385 3-isopropylmalate dehydrogenase 0.73 27
Pseudomonas sp. S08-1 0.47 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.62 OH686_04470 3-isopropylmalate dehydrogenase low > 80
Pseudomonas putida KT2440 0.47 PP_0074 shikimate 5-dehydrogenase 0.64 PP_1988 3-isopropylmalate dehydrogenase — —
Shewanella sp. ANA-3 0.47 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.48 Shewana3_3760 3-isopropylmalate dehydrogenase (RefSeq) 0.90 41
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_0025 shikimate dehydrogenase 0.63 Psyr_1985 3-isopropylmalate dehydrogenase 0.63 22
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_0025 shikimate dehydrogenase 0.63 Psyr_1985 3-isopropylmalate dehydrogenase 0.69 8
Pseudomonas sp. RS175 0.46 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.64 PFR28_02821 3-isopropylmalate dehydrogenase — —
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_11315 shikimate dehydrogenase 0.64 AO356_21415 3-isopropylmalate dehydrogenase 0.45 61
Pseudomonas simiae WCS417 0.45 PS417_00125 shikimate dehydrogenase 0.64 PS417_18585 3-isopropylmalate dehydrogenase — —
Pseudomonas fluorescens SBW25 0.45 PFLU_RS00120 shikimate dehydrogenase 0.63 PFLU_RS20565 3-isopropylmalate dehydrogenase — —
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.65 Pf1N1B4_12 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.51 43
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.64 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85) — —
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS00120 shikimate dehydrogenase 0.63 PFLU_RS20565 3-isopropylmalate dehydrogenase — —
Marinobacter adhaerens HP15 0.45 HP15_3750 shikimate dehydrogenase 0.64 HP15_1832 3-isopropylmalate dehydrogenase — —
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_00280 shikimate dehydrogenase 0.49 CSW01_12600 3-isopropylmalate dehydrogenase low > 62
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.64 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.77 30
Pseudomonas stutzeri RCH2 0.44 Psest_0029 shikimate 5-dehydrogenase 0.63 Psest_2589 3-isopropylmalate dehydrogenase — —
Castellaniella sp019104865 MT123 0.44 ABCV34_RS11630 shikimate dehydrogenase 0.75 ABCV34_RS04280 3-isopropylmalate dehydrogenase low > 48
Shewanella oneidensis MR-1 0.44 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.48 SO4235 leuB 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.88 23
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_10670 shikimate dehydrogenase 0.65 AO353_20635 3-isopropylmalate dehydrogenase 0.74 17
Shewanella amazonensis SB2B 0.41 Sama_0052 shikimate dehydrogenase (RefSeq) 0.47 Sama_0336 3-isopropylmalate dehydrogenase (RefSeq) 0.68 58
Pantoea sp. MT58 0.40 IAI47_02315 shikimate dehydrogenase 0.47 IAI47_16005 3-isopropylmalate dehydrogenase — —
Shewanella loihica PV-4 0.40 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.48 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) 0.80 24
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.49 OHPLBJKB_03584 3-isopropylmalate dehydrogenase low > 73
Escherichia coli BL21 0.39 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.49 ECD_00075 3-isopropylmalate dehydrogenase, NAD(+)-dependent low > 61
Escherichia coli BW25113 0.39 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.49 b0073 leuB 3-isopropylmalate dehydrogenase (VIMSS) 0.93 15
Escherichia coli ECOR27 0.39 NOLOHH_09355 aroE shikimate dehydrogenase 0.49 NOLOHH_03065 leuA 2-isopropylmalate synthase 0.86 40
Escherichia coli ECRC62 0.39 BNILDI_02165 aroE shikimate dehydrogenase 0.49 BNILDI_08545 leuA 2-isopropylmalate synthase 0.91 43
Escherichia coli ECOR38 0.39 HEPCGN_16385 aroE shikimate dehydrogenase 0.49 HEPCGN_08700 leuB 3-isopropylmalate dehydrogenase 0.82 32
Escherichia coli ECRC101 0.38 MCAODC_08085 aroE shikimate dehydrogenase 0.49 MCAODC_01235 leuB 3-isopropylmalate dehydrogenase 0.82 33
Escherichia coli ECRC98 0.38 JDDGAC_21185 aroE shikimate dehydrogenase 0.49 JDDGAC_14315 leuB 3-isopropylmalate dehydrogenase 0.78 60
Escherichia coli ECRC99 0.38 KEDOAH_10585 aroE shikimate dehydrogenase 0.49 KEDOAH_17435 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC100 0.38 OKFHMN_17565 aroE shikimate dehydrogenase 0.49 OKFHMN_10720 leuB 3-isopropylmalate dehydrogenase 0.95 22
Escherichia coli ECRC102 0.38 NIAGMN_15325 aroE shikimate dehydrogenase 0.49 NIAGMN_08570 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli Nissle 1917 0.38 ECOLIN_RS18840 shikimate dehydrogenase 0.49 ECOLIN_RS00395 3-isopropylmalate dehydrogenase 0.77 23
Acidovorax sp. GW101-3H11 0.38 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.79 Ac3H11_1528 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.88 19
Escherichia fergusonii Becca 0.38 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.49 EFB2_03972 3-isopropylmalate dehydrogenase low > 86
Enterobacter asburiae PDN3 0.37 EX28DRAFT_0046 shikimate dehydrogenase 0.49 EX28DRAFT_3669 3-isopropylmalate dehydrogenase low > 76
Serratia liquefaciens MT49 0.37 IAI46_23240 shikimate dehydrogenase 0.51 IAI46_03350 3-isopropylmalate dehydrogenase low > 86
Erwinia tracheiphila SCR3 0.37 LU632_RS22445 aroE shikimate dehydrogenase 0.47 LU632_RS02875 leuB 3-isopropylmalate dehydrogenase 0.50 50
Klebsiella michiganensis M5al 0.36 BWI76_RS25645 shikimate dehydrogenase 0.50 BWI76_RS04675 3-isopropylmalate dehydrogenase 0.75 35
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.50 GFF165 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 78
Enterobacter sp. TBS_079 0.36 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.49 MPMX20_00768 3-isopropylmalate dehydrogenase 0.81 57
Variovorax sp. SCN45 0.35 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.79 GFF3888 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 127
Acinetobacter radioresistens SK82 0.35 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.59 MPMX26_00348 3-isopropylmalate dehydrogenase low > 36
Dickeya dianthicola ME23 0.35 DZA65_RS20315 shikimate dehydrogenase 0.50 DZA65_RS19205 3-isopropylmalate dehydrogenase — —
Alteromonas macleodii MIT1002 0.35 MIT1002_00029 Shikimate dehydrogenase 0.51 MIT1002_00948 3-isopropylmalate dehydrogenase — —
Dickeya dadantii 3937 0.35 DDA3937_RS19100 shikimate dehydrogenase 0.49 DDA3937_RS18120 3-isopropylmalate dehydrogenase — —
Dickeya dianthicola 67-19 0.35 HGI48_RS19190 shikimate dehydrogenase 0.49 HGI48_RS18060 3-isopropylmalate dehydrogenase — —
Variovorax sp. OAS795 0.34 ABID97_RS06300 shikimate dehydrogenase 0.79 ABID97_RS08455 3-isopropylmalate dehydrogenase — —
Pectobacterium carotovorum WPP14 0.33 HER17_RS02250 shikimate dehydrogenase 0.49 HER17_RS03080 3-isopropylmalate dehydrogenase 0.94 12
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.60 Xcc-8004.1053.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.91 5
Lysobacter sp. OAE881 0.29 ABIE51_RS01815 shikimate dehydrogenase 0.44 ABIE51_RS17585 3-isopropylmalate dehydrogenase 0.67 44
Kangiella aquimarina DSM 16071 0.28 B158DRAFT_0259 shikimate 5-dehydrogenase 0.63 B158DRAFT_1322 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 40
Methanococcus maripaludis S2 0.21 MMP_RS04855 shikimate dehydrogenase 0.30 MMP_RS04575 homoisocitrate dehydrogenase — —
Rhodopseudomonas palustris CGA009 0.21 TX73_022410 shikimate dehydrogenase 0.48 TX73_001175 3-isopropylmalate dehydrogenase — —
Sinorhizobium meliloti 1021 0.20 SMc02791 shikimate 5-dehydrogenase 0.50 SMc04405 3-isopropylmalate dehydrogenase — —
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU0115 aroE shikimate 5-dehydrogenase (TIGR) 0.54 DVU2985 leuB 3-isopropylmalate dehydrogenase (TIGR) — —
Desulfovibrio vulgaris Miyazaki F 0.20 DvMF_1962 shikimate 5-dehydrogenase (RefSeq) 0.57 DvMF_1794 3-isopropylmalate dehydrogenase (RefSeq) — —
Synechococcus elongatus PCC 7942 0.20 Synpcc7942_2467 aroE shikimate 5-dehydrogenase 0.56 Synpcc7942_1505 leuB 3-isopropylmalate dehydrogenase — —
Phaeobacter inhibens DSM 17395 0.19 PGA1_c35150 shikimate dehydrogenase AroE 0.54 PGA1_c29830 3-isopropylmalate dehydrogenase LeuB — —
Rhodospirillum rubrum S1H 0.19 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) 0.51 Rru_A1191 3-isopropylmalate dehydrogenase (NCBI) — —
Rhizobium sp. OAE497 0.19 ABIE40_RS19250 shikimate dehydrogenase 0.52 ABIE40_RS19050 3-isopropylmalate dehydrogenase — —
Azospirillum sp. SherDot2 0.19 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) 0.51 MPMX19_00607 3-isopropylmalate dehydrogenase — —
Bosea sp. OAE506 0.18 ABIE41_RS04650 shikimate dehydrogenase 0.51 ABIE41_RS11860 3-isopropylmalate dehydrogenase — —
Azospirillum brasilense Sp245 0.18 AZOBR_RS01765 shikimate 5-dehydrogenase 0.49 AZOBR_RS14130 3-isopropylmalate dehydrogenase — —
Caulobacter crescentus NA1000 Δfur 0.17 CCNA_00003 shikimate 5-dehydrogenase 0.48 CCNA_00193 3-isopropylmalate dehydrogenase low > 67
Caulobacter crescentus NA1000 0.17 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.48 CCNA_00193 3-isopropylmalate dehydrogenase 0.92 14
Parabacteroides merdae CL09T00C40 0.15 HMPREF1078_RS14200 shikimate dehydrogenase 0.40 HMPREF1078_RS16640 3-isopropylmalate dehydrogenase 0.93 5
Bacteroides stercoris CC31F 0.15 HMPREF1181_RS06320 shikimate dehydrogenase 0.39 HMPREF1181_RS14125 3-isopropylmalate dehydrogenase 0.79 39
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS20055 shikimate dehydrogenase 0.47 ABZR88_RS11605 3-isopropylmalate dehydrogenase — —
Phocaeicola vulgatus CL09T03C04 0.14 HMPREF1058_RS16750 shikimate dehydrogenase 0.39 HMPREF1058_RS14565 3-isopropylmalate dehydrogenase low > 67
Phocaeicola dorei CL03T12C01 0.14 ABI39_RS12665 shikimate dehydrogenase 0.39 ABI39_RS10215 3-isopropylmalate dehydrogenase 0.78 36
Echinicola vietnamensis KMM 6221, DSM 17526 0.14 Echvi_1145 Shikimate 5-dehydrogenase 0.44 Echvi_2062 3-isopropylmalate dehydrogenase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.14 CA264_19075 shikimate dehydrogenase 0.43 CA264_09445 3-isopropylmalate dehydrogenase — —
Magnetospirillum magneticum AMB-1 0.14 AMB_RS23010 shikimate dehydrogenase 0.52 AMB_RS20570 3-isopropylmalate dehydrogenase — —
Pedobacter sp. GW460-11-11-14-LB5 0.13 CA265_RS19745 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.48 CA265_RS15850 3-isopropylmalate dehydrogenase — —
Bacteroides ovatus ATCC 8483 0.13 BACOVA_05065 putative shikimate dehydrogenase 0.39 BACOVA_04600 3-isopropylmalate dehydrogenase — —
Bacteroides thetaiotaomicron VPI-5482 0.13 BT4215 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.39 BT1857 3-isopropylmalate dehydrogenase (NCBI ptt file) — —

Not shown: 2 genomes with orthologs for BPHYT_RS16975 only; 11 genomes with orthologs for BPHYT_RS33900 only