Conservation of cofitness between BPHYT_RS33900 and BPHYT_RS17885 in Burkholderia phytofirmans PsJN

89 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS33900 3-isopropylmalate dehydrogenase 1.0 BPHYT_RS17885 3-dehydroquinate synthase 0.90 19
Paraburkholderia graminis OAS925 0.98 ABIE53_004804 3-isopropylmalate dehydrogenase 0.96 ABIE53_003740 3-dehydroquinate synthase — —
Paraburkholderia bryophila 376MFSha3.1 0.98 H281DRAFT_06072 3-isopropylmalate dehydrogenase 0.96 H281DRAFT_05615 3-dehydroquinate synthase — —
Paraburkholderia sabiae LMG 24235 0.96 QEN71_RS17620 3-isopropylmalate dehydrogenase 0.89 QEN71_RS28035 3-dehydroquinate synthase 0.58 74
Ralstonia sp. UNC404CL21Col 0.89 ABZR87_RS14530 3-isopropylmalate dehydrogenase 0.71 ABZR87_RS02590 3-dehydroquinate synthase 0.85 24
Cupriavidus basilensis FW507-4G11 0.89 RR42_RS14385 3-isopropylmalate dehydrogenase 0.75 RR42_RS19005 3-dehydroquinate synthase 0.77 19
Ralstonia solanacearum PSI07 0.89 RPSI07_RS14705 3-isopropylmalate dehydrogenase 0.71 RPSI07_RS10300 3-dehydroquinate synthase — —
Ralstonia solanacearum GMI1000 0.89 RS_RS09990 3-isopropylmalate dehydrogenase 0.71 RS_RS14880 3-dehydroquinate synthase — —
Ralstonia solanacearum IBSBF1503 0.89 RALBFv3_RS02610 3-isopropylmalate dehydrogenase 0.72 RALBFv3_RS06935 3-dehydroquinate synthase — —
Ralstonia solanacearum UW163 0.89 UW163_RS11115 3-isopropylmalate dehydrogenase 0.72 UW163_RS06680 3-dehydroquinate synthase — —
Acidovorax sp. GW101-3H11 0.79 Ac3H11_1528 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.56 Ac3H11_4705 3-dehydroquinate synthase (EC 4.2.3.4) 0.78 37
Variovorax sp. SCN45 0.79 GFF3888 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.61 GFF5325 3-dehydroquinate synthase (EC 4.2.3.4) 0.64 5
Variovorax sp. OAS795 0.79 ABID97_RS08455 3-isopropylmalate dehydrogenase 0.63 ABID97_RS23255 3-dehydroquinate synthase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.77 GFF3360 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.60 GFF1331 3-dehydroquinate synthase (EC 4.2.3.4) 0.66 26
Castellaniella sp019104865 MT123 0.75 ABCV34_RS04280 3-isopropylmalate dehydrogenase 0.58 ABCV34_RS12705 3-dehydroquinate synthase — —
Dechlorosoma suillum PS 0.68 Dsui_3198 3-isopropylmalate dehydrogenase 0.57 Dsui_1095 3-dehydroquinate synthase — —
Pseudomonas fluorescens FW300-N2E3 0.65 AO353_20635 3-isopropylmalate dehydrogenase 0.55 AO353_12505 3-dehydroquinate synthase — —
Pseudomonas fluorescens FW300-N1B4 0.65 Pf1N1B4_12 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.56 Pf1N1B4_1537 3-dehydroquinate synthase (EC 4.2.3.4) — —
Pseudomonas putida KT2440 0.64 PP_1988 3-isopropylmalate dehydrogenase 0.58 PP_5078 3-dehydroquinate synthase — —
Pseudomonas fluorescens FW300-N2E2 0.64 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.56 Pf6N2E2_3754 3-dehydroquinate synthase (EC 4.2.3.4) — —
Pseudomonas fluorescens FW300-N2C3 0.64 AO356_21415 3-isopropylmalate dehydrogenase 0.56 AO356_09385 3-dehydroquinate synthase — —
Pseudomonas fluorescens GW456-L13 0.64 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.56 PfGW456L13_275 3-dehydroquinate synthase (EC 4.2.3.4) 0.67 69
Pseudomonas sp. RS175 0.64 PFR28_02821 3-isopropylmalate dehydrogenase 0.54 PFR28_05013 3-dehydroquinate synthase — —
Marinobacter adhaerens HP15 0.64 HP15_1832 3-isopropylmalate dehydrogenase 0.55 HP15_480 3-dehydroquinate synthase — —
Pseudomonas simiae WCS417 0.64 PS417_18585 3-isopropylmalate dehydrogenase 0.57 PS417_01985 3-dehydroquinate synthase — —
Pseudomonas fluorescens SBW25-INTG 0.63 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.57 PFLU_RS02030 3-dehydroquinate synthase — —
Pseudomonas fluorescens SBW25 0.63 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.57 PFLU_RS02030 3-dehydroquinate synthase — —
Kangiella aquimarina DSM 16071 0.63 B158DRAFT_1322 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.44 B158DRAFT_0764 3-dehydroquinate synthase (EC 4.2.3.4) low > 40
Pseudomonas syringae pv. syringae B728a 0.63 Psyr_1985 3-isopropylmalate dehydrogenase 0.54 Psyr_0409 3-dehydroquinate synthase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.63 Psyr_1985 3-isopropylmalate dehydrogenase 0.54 Psyr_0409 3-dehydroquinate synthase — —
Pseudomonas stutzeri RCH2 0.63 Psest_2589 3-isopropylmalate dehydrogenase 0.54 Psest_3713 3-dehydroquinate synthase — —
Pseudomonas sp. S08-1 0.62 OH686_04470 3-isopropylmalate dehydrogenase 0.57 OH686_10015 3-dehydroquinate synthase — —
Sphingomonas koreensis DSMZ 15582 0.60 Ga0059261_3190 3-isopropylmalate dehydrogenase 0.35 Ga0059261_3591 3-dehydroquinate synthase (EC 4.2.3.4) — —
Xanthomonas campestris pv. campestris strain 8004 0.60 Xcc-8004.1053.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.38 Xcc-8004.1615.1 3-dehydroquinate synthase (EC 4.2.3.4) low > 74
Acinetobacter radioresistens SK82 0.59 MPMX26_00348 3-isopropylmalate dehydrogenase 0.55 MPMX26_02810 3-dehydroquinate synthase — —
Synechococcus elongatus PCC 7942 0.56 Synpcc7942_1505 leuB 3-isopropylmalate dehydrogenase 0.40 Synpcc7942_0525 aroB 3-dehydroquinate synthase — —
Phaeobacter inhibens DSM 17395 0.54 PGA1_c29830 3-isopropylmalate dehydrogenase LeuB 0.37 PGA1_c14100 3-dehydroquinate synthase AroB — —
Dinoroseobacter shibae DFL-12 0.52 Dshi_0081 3-isopropylmalate dehydrogenase (RefSeq) 0.36 Dshi_1608 3-dehydroquinate synthase (RefSeq) — —
Magnetospirillum magneticum AMB-1 0.52 AMB_RS20570 3-isopropylmalate dehydrogenase 0.40 AMB_RS19865 3-dehydroquinate synthase — —
Rhizobium sp. OAE497 0.52 ABIE40_RS19050 3-isopropylmalate dehydrogenase 0.38 ABIE40_RS17670 3-dehydroquinate synthase — —
Serratia liquefaciens MT49 0.51 IAI46_03350 3-isopropylmalate dehydrogenase 0.49 IAI46_23700 3-dehydroquinate synthase 0.60 41
Azospirillum sp. SherDot2 0.51 MPMX19_00607 3-isopropylmalate dehydrogenase 0.39 MPMX19_02639 3-dehydroquinate synthase — —
Rhodospirillum rubrum S1H 0.51 Rru_A1191 3-isopropylmalate dehydrogenase (NCBI) 0.43 Rru_A3741 3-dehydroquinate synthase (NCBI) — —
Alteromonas macleodii MIT1002 0.51 MIT1002_00948 3-isopropylmalate dehydrogenase 0.53 MIT1002_00447 3-dehydroquinate synthase — —
Sinorhizobium meliloti 1021 0.50 SMc04405 3-isopropylmalate dehydrogenase 0.38 SMc00696 3-dehydroquinate synthase — —
Klebsiella michiganensis M5al 0.50 BWI76_RS04675 3-isopropylmalate dehydrogenase 0.49 BWI76_RS26085 3-dehydroquinate synthase 0.58 78
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.50 GFF165 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.48 GFF630 3-dehydroquinate synthase (EC 4.2.3.4) low > 78
Rahnella sp. WP5 0.50 EX31_RS03685 3-isopropylmalate dehydrogenase 0.51 EX31_RS04720 3-dehydroquinate synthase — —
Dickeya dianthicola ME23 0.50 DZA65_RS19205 3-isopropylmalate dehydrogenase 0.48 DZA65_RS20760 3-dehydroquinate synthase — —
Enterobacter sp. TBS_079 0.49 MPMX20_00768 3-isopropylmalate dehydrogenase 0.49 MPMX20_04278 3-dehydroquinate synthase 0.76 58
Dickeya dianthicola 67-19 0.49 HGI48_RS18060 3-isopropylmalate dehydrogenase 0.48 HGI48_RS19675 3-dehydroquinate synthase — —
Dickeya dadantii 3937 0.49 DDA3937_RS18120 3-isopropylmalate dehydrogenase 0.49 DDA3937_RS19545 3-dehydroquinate synthase — —
Pectobacterium carotovorum WPP14 0.49 HER17_RS03080 3-isopropylmalate dehydrogenase 0.48 HER17_RS01780 3-dehydroquinate synthase 0.85 72
Agrobacterium fabrum C58 0.49 Atu2791 3-isopropylmalate dehydrogenase 0.36 Atu3625 3-dehydroquinate synthase — —
Enterobacter asburiae PDN3 0.49 EX28DRAFT_3669 3-isopropylmalate dehydrogenase 0.48 EX28DRAFT_4153 3-dehydroquinate synthase (EC 4.2.3.4) low > 76
Escherichia coli Nissle 1917 0.49 ECOLIN_RS00395 3-isopropylmalate dehydrogenase 0.50 ECOLIN_RS19360 3-dehydroquinate synthase 0.84 24
Azospirillum brasilense Sp245 0.49 AZOBR_RS14130 3-isopropylmalate dehydrogenase 0.38 AZOBR_RS03220 3-dehydroquinate synthase — —
Escherichia fergusonii Becca 0.49 EFB2_03972 3-isopropylmalate dehydrogenase 0.50 EFB2_00439 3-dehydroquinate synthase low > 86
Escherichia coli ECOR38 0.49 HEPCGN_08700 leuB 3-isopropylmalate dehydrogenase 0.50 HEPCGN_15935 aroB 3-dehydroquinate synthase 0.85 70
Escherichia coli ECRC98 0.49 JDDGAC_14315 leuB 3-isopropylmalate dehydrogenase 0.50 JDDGAC_20745 aroB 3-dehydroquinate synthase 0.90 37
Escherichia coli ECRC102 0.49 NIAGMN_08570 leuB 3-isopropylmalate dehydrogenase 0.50 NIAGMN_14885 aroB 3-dehydroquinate synthase — —
Escherichia coli ECRC100 0.49 OKFHMN_10720 leuB 3-isopropylmalate dehydrogenase 0.50 OKFHMN_17115 aroB 3-dehydroquinate synthase 0.96 43
Escherichia coli ECRC101 0.49 MCAODC_01235 leuB 3-isopropylmalate dehydrogenase 0.50 MCAODC_07645 aroB 3-dehydroquinate synthase 0.84 52
Escherichia coli ECRC99 0.49 KEDOAH_17435 leuB 3-isopropylmalate dehydrogenase 0.50 KEDOAH_11025 aroB 3-dehydroquinate synthase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_03584 3-isopropylmalate dehydrogenase 0.51 OHPLBJKB_00314 3-dehydroquinate synthase low > 73
Escherichia coli ECOR27 0.49 NOLOHH_03065 leuA 2-isopropylmalate synthase 0.51 NOLOHH_08905 aroB 3-dehydroquinate synthase 0.94 24
Escherichia coli BW25113 0.49 b0073 leuB 3-isopropylmalate dehydrogenase (VIMSS) 0.50 b3389 aroB 3-dehydroquinate synthase (NCBI) 0.92 26
Escherichia coli ECRC62 0.49 BNILDI_08545 leuA 2-isopropylmalate synthase 0.51 BNILDI_02615 aroB 3-dehydroquinate synthase 0.94 49
Escherichia coli BL21 0.49 ECD_00075 3-isopropylmalate dehydrogenase, NAD(+)-dependent 0.51 ECD_03241 3-dehydroquinate synthase low > 61
Vibrio cholerae E7946 ATCC 55056 0.49 CSW01_12600 3-isopropylmalate dehydrogenase 0.50 CSW01_13300 3-dehydroquinate synthase low > 62
Shewanella loihica PV-4 0.48 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) 0.51 Shew_0214 3-dehydroquinate synthase (RefSeq) low > 60
Shewanella oneidensis MR-1 0.48 SO4235 leuB 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.53 SO0287 aroB 3-dehydroquinate synthase (NCBI ptt file) 0.86 75
Rhodopseudomonas palustris CGA009 0.48 TX73_001175 3-isopropylmalate dehydrogenase 0.37 TX73_002610 3-dehydroquinate synthase — —
Shewanella sp. ANA-3 0.48 Shewana3_3760 3-isopropylmalate dehydrogenase (RefSeq) 0.52 Shewana3_3893 aroB 3-dehydroquinate synthase (RefSeq) 0.89 51
Caulobacter crescentus NA1000 0.48 CCNA_00193 3-isopropylmalate dehydrogenase 0.40 CCNA_03104 3-dehydroquinate synthase 0.90 41
Caulobacter crescentus NA1000 Δfur 0.48 CCNA_00193 3-isopropylmalate dehydrogenase 0.40 CCNA_03104 3-dehydroquinate synthase low > 67
Pantoea sp. MT58 0.47 IAI47_16005 3-isopropylmalate dehydrogenase 0.50 IAI47_01895 3-dehydroquinate synthase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.47 ABZR88_RS11605 3-isopropylmalate dehydrogenase 0.27 ABZR88_RS05215 3-dehydroquinate synthase — —
Erwinia tracheiphila SCR3 0.47 LU632_RS02875 leuB 3-isopropylmalate dehydrogenase 0.48 LU632_RS22865 aroB 3-dehydroquinate synthase low > 74
Shewanella amazonensis SB2B 0.47 Sama_0336 3-isopropylmalate dehydrogenase (RefSeq) 0.55 Sama_3367 3-dehydroquinate synthase (RefSeq) low > 62
Lysobacter sp. OAE881 0.44 ABIE51_RS17585 3-isopropylmalate dehydrogenase 0.42 ABIE51_RS16100 3-dehydroquinate synthase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.44 Echvi_2062 3-isopropylmalate dehydrogenase 0.23 Echvi_0121 3-dehydroquinate synthase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.43 CA264_09445 3-isopropylmalate dehydrogenase 0.24 CA264_13105 3-dehydroquinate synthase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.42 A4249_RS09995 3-isopropylmalate dehydrogenase 0.38 A4249_RS04175 3-dehydroquinate synthase — —
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_13595 leuB 3-isopropylmalate dehydrogenase 0.41 OKGIIK_11185 aroB 3-dehydroquinate synthase — —
Rhodanobacter denitrificans MT42 0.41 LRK55_RS09965 3-isopropylmalate dehydrogenase 0.41 LRK55_RS04085 3-dehydroquinate synthase — —
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS10325 3-isopropylmalate dehydrogenase 0.41 LRK54_RS04310 3-dehydroquinate synthase — —
Dyella japonica UNC79MFTsu3.2 0.40 ABZR86_RS15950 3-isopropylmalate dehydrogenase 0.39 ABZR86_RS10480 3-dehydroquinate synthase low > 74
Parabacteroides merdae CL09T00C40 0.40 HMPREF1078_RS16640 3-isopropylmalate dehydrogenase 0.22 HMPREF1078_RS04395 3-dehydroquinate synthase — —
Bacteroides stercoris CC31F 0.39 HMPREF1181_RS14125 3-isopropylmalate dehydrogenase 0.24 HMPREF1181_RS09265 3-dehydroquinate synthase low > 56

Not shown: 10 genomes with orthologs for BPHYT_RS33900 only; 1 genomes with orthologs for BPHYT_RS17885 only