Conservation of cofitness between ABZR87_RS01605 and ABZR87_RS14530 in Ralstonia sp. UNC404CL21Col

87 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Ralstonia sp. UNC404CL21Col 1.0 ABZR87_RS01605 shikimate dehydrogenase 1.0 ABZR87_RS14530 3-isopropylmalate dehydrogenase 0.64 13
Ralstonia solanacearum PSI07 0.87 RPSI07_RS11300 shikimate dehydrogenase 0.97 RPSI07_RS14705 3-isopropylmalate dehydrogenase 0.61 54
Ralstonia solanacearum GMI1000 0.84 RS_RS13890 shikimate dehydrogenase 0.98 RS_RS09990 3-isopropylmalate dehydrogenase low > 80
Ralstonia solanacearum IBSBF1503 0.82 RALBFv3_RS05945 shikimate dehydrogenase 0.97 RALBFv3_RS02610 3-isopropylmalate dehydrogenase 0.42 59
Ralstonia solanacearum UW163 0.82 UW163_RS07680 shikimate dehydrogenase 0.97 UW163_RS11115 3-isopropylmalate dehydrogenase — —
Paraburkholderia sabiae LMG 24235 0.53 QEN71_RS27130 shikimate dehydrogenase 0.90 QEN71_RS17620 3-isopropylmalate dehydrogenase 0.56 90
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS16975 shikimate 5-dehydrogenase 0.89 BPHYT_RS33900 3-isopropylmalate dehydrogenase 0.73 15
Paraburkholderia graminis OAS925 0.50 ABIE53_003560 shikimate dehydrogenase 0.90 ABIE53_004804 3-isopropylmalate dehydrogenase — —
Paraburkholderia bryophila 376MFSha3.1 0.50 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.89 H281DRAFT_06072 3-isopropylmalate dehydrogenase — —
Cupriavidus basilensis FW507-4G11 0.50 RR42_RS17645 shikimate dehydrogenase 0.91 RR42_RS14385 3-isopropylmalate dehydrogenase 0.73 27
Herbaspirillum seropedicae SmR1 0.48 HSERO_RS01990 shikimate 5-dehydrogenase 0.87 HSERO_RS16500 3-isopropylmalate dehydrogenase 0.75 13
Pseudomonas fluorescens FW300-N1B4 0.44 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.65 Pf1N1B4_12 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.51 43
Pseudomonas sp. RS175 0.43 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.64 PFR28_02821 3-isopropylmalate dehydrogenase — —
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.65 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.77 30
Pseudomonas fluorescens FW300-N2E3 0.43 AO353_10670 shikimate dehydrogenase 0.65 AO353_20635 3-isopropylmalate dehydrogenase 0.74 17
Pseudomonas fluorescens FW300-N2C3 0.42 AO356_11315 shikimate dehydrogenase 0.65 AO356_21415 3-isopropylmalate dehydrogenase 0.45 61
Pseudomonas fluorescens FW300-N2E2 0.42 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.65 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85) — —
Pseudomonas simiae WCS417 0.42 PS417_00125 shikimate dehydrogenase 0.65 PS417_18585 3-isopropylmalate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_0025 shikimate dehydrogenase 0.64 Psyr_1985 3-isopropylmalate dehydrogenase 0.63 22
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_0025 shikimate dehydrogenase 0.64 Psyr_1985 3-isopropylmalate dehydrogenase 0.69 8
Shewanella sp. ANA-3 0.41 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.47 Shewana3_3760 3-isopropylmalate dehydrogenase (RefSeq) 0.90 41
Pseudomonas sp. S08-1 0.41 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.62 OH686_04470 3-isopropylmalate dehydrogenase low > 80
Pseudomonas putida KT2440 0.41 PP_0074 shikimate 5-dehydrogenase 0.65 PP_1988 3-isopropylmalate dehydrogenase — —
Castellaniella sp019104865 MT123 0.41 ABCV34_RS11630 shikimate dehydrogenase 0.75 ABCV34_RS04280 3-isopropylmalate dehydrogenase low > 48
Pseudomonas fluorescens SBW25-INTG 0.41 PFLU_RS00120 shikimate dehydrogenase 0.64 PFLU_RS20565 3-isopropylmalate dehydrogenase — —
Pseudomonas fluorescens SBW25 0.41 PFLU_RS00120 shikimate dehydrogenase 0.64 PFLU_RS20565 3-isopropylmalate dehydrogenase — —
Shewanella oneidensis MR-1 0.41 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.47 SO4235 leuB 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.88 23
Pseudomonas stutzeri RCH2 0.40 Psest_0029 shikimate 5-dehydrogenase 0.63 Psest_2589 3-isopropylmalate dehydrogenase — —
Marinobacter adhaerens HP15 0.40 HP15_3750 shikimate dehydrogenase 0.64 HP15_1832 3-isopropylmalate dehydrogenase — —
Vibrio cholerae E7946 ATCC 55056 0.39 CSW01_00280 shikimate dehydrogenase 0.48 CSW01_12600 3-isopropylmalate dehydrogenase low > 62
Acidovorax sp. GW101-3H11 0.38 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.81 Ac3H11_1528 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.88 19
Shewanella amazonensis SB2B 0.36 Sama_0052 shikimate dehydrogenase (RefSeq) 0.45 Sama_0336 3-isopropylmalate dehydrogenase (RefSeq) 0.68 58
Klebsiella michiganensis M5al 0.36 BWI76_RS25645 shikimate dehydrogenase 0.49 BWI76_RS04675 3-isopropylmalate dehydrogenase 0.75 35
Escherichia fergusonii Becca 0.36 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.48 EFB2_03972 3-isopropylmalate dehydrogenase low > 86
Rahnella sp. WP5 0.36 EX31_RS15950 shikimate dehydrogenase 0.48 EX31_RS03685 3-isopropylmalate dehydrogenase — —
Pantoea sp. MT58 0.36 IAI47_02315 shikimate dehydrogenase 0.46 IAI47_16005 3-isopropylmalate dehydrogenase — —
Dickeya dadantii 3937 0.36 DDA3937_RS19100 shikimate dehydrogenase 0.48 DDA3937_RS18120 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC62 0.36 BNILDI_02165 aroE shikimate dehydrogenase 0.48 BNILDI_08545 leuA 2-isopropylmalate synthase 0.91 43
Escherichia coli ECOR27 0.36 NOLOHH_09355 aroE shikimate dehydrogenase 0.48 NOLOHH_03065 leuA 2-isopropylmalate synthase 0.86 40
Dickeya dianthicola ME23 0.35 DZA65_RS20315 shikimate dehydrogenase 0.49 DZA65_RS19205 3-isopropylmalate dehydrogenase — —
Dickeya dianthicola 67-19 0.35 HGI48_RS19190 shikimate dehydrogenase 0.48 HGI48_RS18060 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC101 0.35 MCAODC_08085 aroE shikimate dehydrogenase 0.48 MCAODC_01235 leuB 3-isopropylmalate dehydrogenase 0.82 33
Escherichia coli ECRC102 0.35 NIAGMN_15325 aroE shikimate dehydrogenase 0.48 NIAGMN_08570 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC100 0.35 OKFHMN_17565 aroE shikimate dehydrogenase 0.48 OKFHMN_10720 leuB 3-isopropylmalate dehydrogenase 0.95 22
Escherichia coli ECRC98 0.35 JDDGAC_21185 aroE shikimate dehydrogenase 0.48 JDDGAC_14315 leuB 3-isopropylmalate dehydrogenase 0.78 60
Serratia liquefaciens MT49 0.35 IAI46_23240 shikimate dehydrogenase 0.49 IAI46_03350 3-isopropylmalate dehydrogenase low > 86
Shewanella loihica PV-4 0.35 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.47 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) 0.80 24
Escherichia coli ECRC99 0.35 KEDOAH_10585 aroE shikimate dehydrogenase 0.48 KEDOAH_17435 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.35 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.48 OHPLBJKB_03584 3-isopropylmalate dehydrogenase low > 73
Escherichia coli BL21 0.35 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.48 ECD_00075 3-isopropylmalate dehydrogenase, NAD(+)-dependent low > 61
Escherichia coli BW25113 0.35 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.48 b0073 leuB 3-isopropylmalate dehydrogenase (VIMSS) 0.93 15
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.49 GFF165 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 78
Escherichia coli ECOR38 0.35 HEPCGN_16385 aroE shikimate dehydrogenase 0.48 HEPCGN_08700 leuB 3-isopropylmalate dehydrogenase 0.82 32
Variovorax sp. SCN45 0.34 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.79 GFF3888 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 127
Erwinia tracheiphila SCR3 0.34 LU632_RS22445 aroE shikimate dehydrogenase 0.46 LU632_RS02875 leuB 3-isopropylmalate dehydrogenase 0.50 50
Pectobacterium carotovorum WPP14 0.33 HER17_RS02250 shikimate dehydrogenase 0.48 HER17_RS03080 3-isopropylmalate dehydrogenase 0.94 12
Variovorax sp. OAS795 0.32 ABID97_RS06300 shikimate dehydrogenase 0.81 ABID97_RS08455 3-isopropylmalate dehydrogenase — —
Acinetobacter radioresistens SK82 0.31 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.61 MPMX26_00348 3-isopropylmalate dehydrogenase low > 36
Xanthomonas campestris pv. campestris strain 8004 0.29 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.60 Xcc-8004.1053.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.91 5
Kangiella aquimarina DSM 16071 0.29 B158DRAFT_0259 shikimate 5-dehydrogenase 0.64 B158DRAFT_1322 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 40
Lysobacter sp. OAE881 0.28 ABIE51_RS01815 shikimate dehydrogenase 0.44 ABIE51_RS17585 3-isopropylmalate dehydrogenase 0.67 44
Alteromonas macleodii MIT1002 0.28 MIT1002_00029 Shikimate dehydrogenase 0.49 MIT1002_00948 3-isopropylmalate dehydrogenase — —
Dyella japonica UNC79MFTsu3.2 0.24 ABZR86_RS14985 shikimate dehydrogenase 0.37 ABZR86_RS15950 3-isopropylmalate dehydrogenase 0.96 24
Methanococcus maripaludis JJ 0.20 MMJJ_RS00280 shikimate dehydrogenase 0.31 MMJJ_RS02220 3-isopropylmalate dehydrogenase — —
Dinoroseobacter shibae DFL-12 0.19 Dshi_3450 shikimate 5-dehydrogenase (RefSeq) 0.53 Dshi_0081 3-isopropylmalate dehydrogenase (RefSeq) — —
Rhodopseudomonas palustris CGA009 0.19 TX73_022410 shikimate dehydrogenase 0.48 TX73_001175 3-isopropylmalate dehydrogenase — —
Desulfovibrio vulgaris Hildenborough JW710 0.19 DVU0115 aroE shikimate 5-dehydrogenase (TIGR) 0.54 DVU2985 leuB 3-isopropylmalate dehydrogenase (TIGR) — —
Phaeobacter inhibens DSM 17395 0.18 PGA1_c35150 shikimate dehydrogenase AroE 0.55 PGA1_c29830 3-isopropylmalate dehydrogenase LeuB — —
Agrobacterium fabrum C58 0.18 Atu0003 shikimate 5-dehydrogenase 0.50 Atu2791 3-isopropylmalate dehydrogenase — —
Sinorhizobium meliloti 1021 0.17 SMc02791 shikimate 5-dehydrogenase 0.52 SMc04405 3-isopropylmalate dehydrogenase — —
Synechococcus elongatus PCC 7942 0.16 Synpcc7942_2467 aroE shikimate 5-dehydrogenase 0.55 Synpcc7942_1505 leuB 3-isopropylmalate dehydrogenase — —
Bosea sp. OAE506 0.16 ABIE41_RS04650 shikimate dehydrogenase 0.52 ABIE41_RS11860 3-isopropylmalate dehydrogenase — —
Desulfovibrio vulgaris Miyazaki F 0.16 DvMF_1962 shikimate 5-dehydrogenase (RefSeq) 0.55 DvMF_1794 3-isopropylmalate dehydrogenase (RefSeq) — —
Azospirillum sp. SherDot2 0.15 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) 0.50 MPMX19_00607 3-isopropylmalate dehydrogenase — —
Rhizobium sp. OAE497 0.15 ABIE40_RS19250 shikimate dehydrogenase 0.53 ABIE40_RS19050 3-isopropylmalate dehydrogenase — —
Caulobacter crescentus NA1000 Δfur 0.15 CCNA_00003 shikimate 5-dehydrogenase 0.49 CCNA_00193 3-isopropylmalate dehydrogenase low > 67
Caulobacter crescentus NA1000 0.15 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.49 CCNA_00193 3-isopropylmalate dehydrogenase 0.92 14
Parabacteroides merdae CL09T00C40 0.14 HMPREF1078_RS14200 shikimate dehydrogenase 0.39 HMPREF1078_RS16640 3-isopropylmalate dehydrogenase 0.93 5
Bacteroides thetaiotaomicron VPI-5482 0.14 BT4215 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.38 BT1857 3-isopropylmalate dehydrogenase (NCBI ptt file) — —
Bacteroides stercoris CC31F 0.13 HMPREF1181_RS06320 shikimate dehydrogenase 0.38 HMPREF1181_RS14125 3-isopropylmalate dehydrogenase 0.79 39
Bacteroides ovatus ATCC 8483 0.13 BACOVA_05065 putative shikimate dehydrogenase 0.38 BACOVA_04600 3-isopropylmalate dehydrogenase — —
Azospirillum brasilense Sp245 0.13 AZOBR_RS01765 shikimate 5-dehydrogenase 0.48 AZOBR_RS14130 3-isopropylmalate dehydrogenase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.13 Echvi_1145 Shikimate 5-dehydrogenase 0.42 Echvi_2062 3-isopropylmalate dehydrogenase — —
Phocaeicola vulgatus CL09T03C04 0.13 HMPREF1058_RS16750 shikimate dehydrogenase 0.38 HMPREF1058_RS14565 3-isopropylmalate dehydrogenase low > 67
Pedobacter sp. GW460-11-11-14-LB5 0.12 CA265_RS19745 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.47 CA265_RS15850 3-isopropylmalate dehydrogenase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.12 CA264_19075 shikimate dehydrogenase 0.42 CA264_09445 3-isopropylmalate dehydrogenase — —
Phocaeicola dorei CL03T12C01 0.12 ABI39_RS12665 shikimate dehydrogenase 0.38 ABI39_RS10215 3-isopropylmalate dehydrogenase 0.78 36
Mucilaginibacter yixingensis YX-36 DSM 26809 0.12 ABZR88_RS20055 shikimate dehydrogenase 0.47 ABZR88_RS11605 3-isopropylmalate dehydrogenase — —

Not shown: 4 genomes with orthologs for ABZR87_RS01605 only; 12 genomes with orthologs for ABZR87_RS14530 only