Conservation of cofitness between Sama_0857 and Sama_3250 in Shewanella amazonensis SB2B

90 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_0857 gltB glutamate synthase subunit alpha (RefSeq) 1.0 Sama_3250 diaminopimelate decarboxylase (RefSeq) 0.86 10
Shewanella oneidensis MR-1 0.89 SO1325 gltB glutamate synthase, large subunit (NCBI ptt file) 0.84 SO4309 lysA diaminopimelate decarboxylase (NCBI ptt file) 0.88 17
Shewanella sp. ANA-3 0.89 Shewana3_3050 gltB glutamate synthase subunit alpha (RefSeq) 0.84 Shewana3_0390 diaminopimelate decarboxylase (RefSeq) 0.89 14
Shewanella loihica PV-4 0.85 Shew_1032 gltB glutamate synthase subunit alpha (RefSeq) 0.81 Shew_0322 diaminopimelate decarboxylase (RefSeq) 0.98 17
Serratia liquefaciens MT49 0.67 IAI46_22345 glutamate synthase large subunit 0.19 IAI46_20520 diaminopimelate decarboxylase 0.58 74
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_12030 glutamate synthase large subunit 0.66 CSW01_00635 diaminopimelate decarboxylase low > 62
Rahnella sp. WP5 0.67 EX31_RS12515 glutamate synthase large subunit 0.20 EX31_RS02420 type III PLP-dependent enzyme low > 89
Pectobacterium carotovorum WPP14 0.67 HER17_RS19910 glutamate synthase large subunit 0.17 HER17_RS03710 diaminopimelate decarboxylase low > 75
Erwinia tracheiphila SCR3 0.66 LU632_RS21315 gltB glutamate synthase large subunit 0.17 LU632_RS06040 lysA diaminopimelate decarboxylase low > 74
Alteromonas macleodii MIT1002 0.66 MIT1002_03139 Glutamate synthase [NADPH] large chain precursor 0.69 MIT1002_00160 Diaminopimelate decarboxylase 0.79 66
Dickeya dianthicola 67-19 0.66 HGI48_RS01560 glutamate synthase large subunit 0.19 HGI48_RS00505 type III PLP-dependent enzyme low > 71
Dickeya dadantii 3937 0.66 DDA3937_RS01665 glutamate synthase large subunit 0.20 DDA3937_RS20740 type III PLP-dependent enzyme low > 74
Dickeya dianthicola ME23 0.66 DZA65_RS01635 glutamate synthase large subunit 0.19 DZA65_RS00505 type III PLP-dependent enzyme low > 75
Escherichia coli ECOR38 0.66 HEPCGN_16760 gltB3 Glutamate synthase domain 3 0.20 HEPCGN_19565 lysA diaminopimelate decarboxylase 0.94 16
Escherichia fergusonii Becca 0.66 EFB2_00611 Glutamate synthase [NADPH] large chain 0.20 EFB2_01045 Diaminopimelate decarboxylase low > 86
Escherichia coli Nissle 1917 0.66 ECOLIN_RS18475 glutamate synthase large subunit 0.20 ECOLIN_RS15930 diaminopimelate decarboxylase low > 55
Escherichia coli BL21 0.66 ECD_03077 glutamate synthase, large subunit 0.20 ECD_02686 diaminopimelate decarboxylase, PLP-binding 0.77 2
Escherichia coli BW25113 0.66 b3212 gltB glutamate synthase, large subunit (NCBI) 0.20 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) 0.49 62
Escherichia coli ECRC62 0.66 BNILDI_01850 gltB glutamate synthase large subunit 0.20 BNILDI_10310 lysA diaminopimelate decarboxylase 0.91 45
Escherichia coli ECRC102 0.66 NIAGMN_15645 gltB glutamate synthase large subunit 0.20 NIAGMN_17715 lysA diaminopimelate decarboxylase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.66 OHPLBJKB_00488 Glutamate synthase [NADPH] large chain 0.20 OHPLBJKB_00891 Diaminopimelate decarboxylase low > 73
Escherichia coli ECRC100 0.66 OKFHMN_17885 gltB glutamate synthase large subunit 0.20 OKFHMN_19945 lysA diaminopimelate decarboxylase 0.89 54
Klebsiella michiganensis M5al 0.66 BWI76_RS25315 glutamate synthase large subunit 0.20 BWI76_RS23360 diaminopimelate decarboxylase 0.59 64
Escherichia coli ECRC101 0.66 MCAODC_08405 gltB glutamate synthase large subunit 0.20 MCAODC_10470 lysA diaminopimelate decarboxylase low > 87
Escherichia coli ECRC98 0.66 JDDGAC_21510 gltB glutamate synthase large subunit 0.20 JDDGAC_23610 lysA diaminopimelate decarboxylase 0.84 49
Escherichia coli ECOR27 0.66 NOLOHH_09685 gltB glutamate synthase large subunit 0.20 NOLOHH_11830 lysA diaminopimelate decarboxylase 0.91 32
Escherichia coli ECRC99 0.66 KEDOAH_10265 gltB glutamate synthase large subunit 0.20 KEDOAH_08185 lysA diaminopimelate decarboxylase — —
Enterobacter sp. TBS_079 0.66 MPMX20_04126 Glutamate synthase [NADPH] large chain 0.20 MPMX20_03705 Diaminopimelate decarboxylase 0.79 4
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.66 GFF2956 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.20 GFF1323 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.52 22
Enterobacter asburiae PDN3 0.66 EX28DRAFT_3275 Glutamate synthase domain 2 0.19 EX28DRAFT_2916 diaminopimelate decarboxylase low > 76
Pseudomonas sp. S08-1 0.59 OH686_10005 Glutamate synthase [NADPH] large chain 0.58 OH686_13800 diaminopimelate decarboxylase low > 80
Pseudomonas fluorescens FW300-N2E2 0.58 Pf6N2E2_3752 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.60 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Pseudomonas stutzeri RCH2 0.58 Psest_3711 Glutamate synthase domain 2 0.60 Psest_3764 diaminopimelate decarboxylase — —
Pseudomonas fluorescens FW300-N2C3 0.58 AO356_09375 glutamate synthase 0.60 AO356_12740 diaminopimelate decarboxylase — —
Marinobacter adhaerens HP15 0.58 HP15_482 glutamate synthase subunit alpha 0.66 HP15_247 diaminopimelate decarboxylase — —
Pseudomonas sp. RS175 0.58 PFR28_05015 Glutamate synthase [NADPH] large chain 0.60 PFR28_04375 Diaminopimelate decarboxylase — —
Pseudomonas fluorescens GW456-L13 0.58 PfGW456L13_272 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.61 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 87
Pseudomonas fluorescens FW300-N2E3 0.58 AO353_12515 glutamate synthase 0.59 AO353_09035 diaminopimelate decarboxylase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.58 Psyr_0411 glutamate synthase (NADPH) large subunit 0.60 Psyr_0182 diaminopimelate decarboxylase — —
Pseudomonas syringae pv. syringae B728a 0.58 Psyr_0411 glutamate synthase (NADPH) large subunit 0.60 Psyr_0182 diaminopimelate decarboxylase — —
Pseudomonas putida KT2440 0.58 PP_5076 L-glutamate synthase(NADPH) alpha subunit 0.60 PP_5227 diaminopimelate decarboxylase 0.21 91
Pseudomonas simiae WCS417 0.58 PS417_02000 glutamate synthase 0.58 PS417_27580 diaminopimelate decarboxylase — —
Pseudomonas fluorescens SBW25-INTG 0.58 PFLU_RS02045 glutamate synthase large subunit 0.59 PFLU_RS29265 diaminopimelate decarboxylase — —
Pseudomonas fluorescens SBW25 0.58 PFLU_RS02045 glutamate synthase large subunit 0.59 PFLU_RS29265 diaminopimelate decarboxylase low > 109
Pseudomonas fluorescens FW300-N1B4 0.57 Pf1N1B4_1534 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.61 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Acinetobacter radioresistens SK82 0.56 MPMX26_02808 Glutamate synthase [NADPH] large chain 0.58 MPMX26_02232 Diaminopimelate decarboxylase 0.56 31
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS10960 glutamate synthase large subunit 0.39 LRK54_RS11485 diaminopimelate decarboxylase low > 59
Rhodanobacter denitrificans MT42 0.50 LRK55_RS10665 glutamate synthase large subunit 0.39 LRK55_RS11215 diaminopimelate decarboxylase low > 63
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS16795 glutamate synthase large subunit 0.40 ABZR86_RS12130 diaminopimelate decarboxylase low > 74
Parabacteroides merdae CL09T00C40 0.41 HMPREF1078_RS01270 glutamate synthase large subunit 0.33 HMPREF1078_RS13545 diaminopimelate decarboxylase low > 61
Synechococcus elongatus PCC 7942 0.41 Synpcc7942_0890 glsF glutamate synthase (ferredoxin) 0.24 Synpcc7942_0262 lysA diaminopimelate decarboxylase — —
Bacteroides ovatus ATCC 8483 0.41 BACOVA_03756 class II glutamine amidotransferase 0.33 BACOVA_00215 diaminopimelate decarboxylase low > 94
Bosea sp. OAE506 0.41 ABIE41_RS08565 glutamate synthase large subunit 0.39 ABIE41_RS08740 diaminopimelate decarboxylase — —
Bacteroides thetaiotaomicron VPI-5482 0.41 BT0553 glutamate synthase, large subunit (NCBI ptt file) 0.33 BT1374 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) low > 81
Phocaeicola vulgatus CL09T03C04 0.41 HMPREF1058_RS06920 glutamate synthase large subunit 0.33 HMPREF1058_RS06195 diaminopimelate decarboxylase low > 67
Bacteroides stercoris CC31F 0.41 HMPREF1181_RS16055 glutamate synthase large subunit 0.31 HMPREF1181_RS11050 diaminopimelate decarboxylase low > 56
Phocaeicola dorei CL03T12C01 0.41 ABI39_RS20685 glutamate synthase large subunit 0.33 ABI39_RS19950 diaminopimelate decarboxylase low > 72
Azospirillum sp. SherDot2 0.41 MPMX19_02657 Glutamate synthase [NADPH] large chain 0.44 MPMX19_05819 Diaminopimelate decarboxylase — —
Rhodopseudomonas palustris CGA009 0.41 TX73_004590 glutamate synthase large subunit 0.46 TX73_024635 diaminopimelate decarboxylase — —
Dechlorosoma suillum PS 0.40 Dsui_1096 glutamate synthase family protein 0.56 Dsui_1182 diaminopimelate decarboxylase — —
Rhizobium sp. OAE497 0.40 ABIE40_RS16275 glutamate synthase large subunit 0.48 ABIE40_RS17530 diaminopimelate decarboxylase — —
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS08700 glutamate synthase large subunit 0.31 CA265_RS09650 diaminopimelate decarboxylase 0.81 35
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS19595 glutamate synthase 0.53 HSERO_RS00950 diaminopimelate decarboxylase — —
Rhodospirillum rubrum S1H 0.40 Rru_A0019 Glutamate synthase (ferredoxin) (NCBI) 0.43 Rru_A0396 Diaminopimelate decarboxylase (NCBI) — —
Sinorhizobium meliloti 1021 0.40 SMc04028 glutamate synthase 0.51 SMc00723 diaminopimelate DAP decarboxylase — —
Ralstonia solanacearum GMI1000 0.40 RS_RS14860 glutamate synthase subunit alpha 0.55 RS_RS14930 diaminopimelate decarboxylase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.40 ABZR88_RS06905 glutamate synthase large subunit 0.31 ABZR88_RS10180 diaminopimelate decarboxylase — —
Agrobacterium fabrum C58 0.40 Atu3784 glutamate synthase large subunit 0.51 Atu3601 diaminopimelate decarboxylase — —
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS06915 glutamate synthase subunit alpha 0.55 RALBFv3_RS06990 diaminopimelate decarboxylase — —
Ralstonia solanacearum UW163 0.40 UW163_RS06700 glutamate synthase subunit alpha 0.55 UW163_RS06625 diaminopimelate decarboxylase — —
Paraburkholderia sabiae LMG 24235 0.40 QEN71_RS28010 glutamate synthase-related protein 0.55 QEN71_RS28080 diaminopimelate decarboxylase 0.77 38
Ralstonia solanacearum PSI07 0.40 RPSI07_RS10320 glutamate synthase subunit alpha 0.55 RPSI07_RS10250 diaminopimelate decarboxylase — —
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS02570 glutamate synthase-related protein 0.54 ABZR87_RS02640 diaminopimelate decarboxylase 0.84 17
Variovorax sp. OAS795 0.39 ABID97_RS23225 glutamate synthase-related protein 0.51 ABID97_RS23305 diaminopimelate decarboxylase — —
Paraburkholderia bryophila 376MFSha3.1 0.39 H281DRAFT_05620 glutamate synthase (NADH) large subunit 0.54 H281DRAFT_05606 diaminopimelate decarboxylase — —
Cupriavidus basilensis FW507-4G11 0.39 RR42_RS18990 glutamate synthase 0.53 RR42_RS19050 diaminopimelate decarboxylase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.39 GFF1327 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.52 GFF1341 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 90
Castellaniella sp019104865 MT123 0.39 ABCV34_RS11150 glutamate synthase-related protein 0.52 ABCV34_RS12685 diaminopimelate decarboxylase — —
Burkholderia phytofirmans PsJN 0.39 BPHYT_RS17855 glutamate synthase 0.54 BPHYT_RS17930 diaminopimelate decarboxylase low > 109
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_1800 Glutamate synthase domain 2 0.41 Ga0059261_2051 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.78 31
Variovorax sp. SCN45 0.39 GFF5332 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.51 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_15200 Glutamate synthase subunit alpha 0.39 OKGIIK_12375 lysA diaminopimelate decarboxylase low > 52
Acidovorax sp. GW101-3H11 0.39 Ac3H11_4710 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.21 Ac3H11_3862 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Magnetospirillum magneticum AMB-1 0.39 AMB_RS02685 glutamate synthase large subunit 0.45 AMB_RS22725 diaminopimelate decarboxylase — —
Mycobacterium tuberculosis H37Rv 0.39 Rv3859c Probable ferredoxin-dependent glutamate synthase [NADPH] (large subunit) GltB (L-glutamate synthase) (L-glutamate synthetase) (NADH-glutamate synthase) (glutamate synthase (NADH))(NADPH-GOGAT) 0.21 Rv1293 Diaminopimelate decarboxylase LysA (DAP decarboxylase) — —
Phaeobacter inhibens DSM 17395 0.39 PGA1_c36100 glutamate synthase [NADPH] large chain 0.46 PGA1_c03470 diaminopimelate decarboxylase LysA — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.39 Echvi_1244 Glutamate synthase domain 2 0.22 Echvi_1295 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.87 30
Dinoroseobacter shibae DFL-12 0.38 Dshi_0002 Glutamate synthase (ferredoxin) (RefSeq) 0.47 Dshi_3059 diaminopimelate decarboxylase (RefSeq) — —
Caulobacter crescentus NA1000 0.38 CCNA_03722 glutamate synthase (NADPH) large chain GltB 0.44 CCNA_02296 diaminopimelate decarboxylase — —
Caulobacter crescentus NA1000 Δfur 0.38 CCNA_03722 glutamate synthase (NADPH) large chain GltB 0.44 CCNA_02296 diaminopimelate decarboxylase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.37 A4249_RS16105 glutamate synthase large subunit 0.40 A4249_RS12545 diaminopimelate decarboxylase 1.00 5

Not shown: 2 genomes with orthologs for Sama_0857 only; 10 genomes with orthologs for Sama_3250 only