Conservation of cofitness between Sama_0857 and Sama_3169 in Shewanella amazonensis SB2B

90 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_0857 gltB glutamate synthase subunit alpha (RefSeq) 1.0 Sama_3169 metF 5,10-methylenetetrahydrofolate reductase (RefSeq) 0.84 17
Shewanella oneidensis MR-1 0.89 SO1325 gltB glutamate synthase, large subunit (NCBI ptt file) 0.92 SO4054 metF 5,10-methylenetetrahydrofolate reductase (NCBI ptt file) 0.85 43
Shewanella sp. ANA-3 0.89 Shewana3_3050 gltB glutamate synthase subunit alpha (RefSeq) 0.92 Shewana3_3612 metF 5,10-methylenetetrahydrofolate reductase (RefSeq) 0.93 3
Shewanella loihica PV-4 0.85 Shew_1032 gltB glutamate synthase subunit alpha (RefSeq) 0.91 Shew_0522 metF 5,10-methylenetetrahydrofolate reductase (RefSeq) 0.99 7
Serratia liquefaciens MT49 0.67 IAI46_22345 glutamate synthase large subunit 0.75 IAI46_24530 methylenetetrahydrofolate reductase 0.77 27
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_12030 glutamate synthase large subunit 0.77 CSW01_13560 methylenetetrahydrofolate reductase low > 62
Rahnella sp. WP5 0.67 EX31_RS12515 glutamate synthase large subunit 0.76 EX31_RS14205 methylenetetrahydrofolate reductase 0.89 68
Pectobacterium carotovorum WPP14 0.67 HER17_RS19910 glutamate synthase large subunit 0.74 HER17_RS00950 methylenetetrahydrofolate reductase low > 75
Erwinia tracheiphila SCR3 0.66 LU632_RS21315 gltB glutamate synthase large subunit 0.75 LU632_RS19630 metF methylenetetrahydrofolate reductase low > 74
Alteromonas macleodii MIT1002 0.66 MIT1002_03139 Glutamate synthase [NADPH] large chain precursor 0.68 MIT1002_03670 5,10-methylenetetrahydrofolate reductase low > 70
Dickeya dianthicola 67-19 0.66 HGI48_RS01560 glutamate synthase large subunit 0.76 HGI48_RS20415 methylenetetrahydrofolate reductase low > 71
Dickeya dadantii 3937 0.66 DDA3937_RS01665 glutamate synthase large subunit 0.76 DDA3937_RS00960 methylenetetrahydrofolate reductase low > 74
Dickeya dianthicola ME23 0.66 DZA65_RS01635 glutamate synthase large subunit 0.76 DZA65_RS21460 methylenetetrahydrofolate reductase 0.75 45
Escherichia fergusonii Becca 0.66 EFB2_00611 Glutamate synthase [NADPH] large chain 0.76 EFB2_04672 5,10-methylenetetrahydrofolate reductase low > 86
Escherichia coli ECOR38 0.66 HEPCGN_16760 gltB3 Glutamate synthase domain 3 0.76 HEPCGN_12310 metF methylenetetrahydrofolate reductase 0.94 15
Escherichia coli Nissle 1917 0.66 ECOLIN_RS18475 glutamate synthase large subunit 0.76 ECOLIN_RS22760 methylenetetrahydrofolate reductase low > 55
Escherichia coli BL21 0.66 ECD_03077 glutamate synthase, large subunit 0.76 ECD_03827 5,10-methylenetetrahydrofolate reductase 0.65 23
Escherichia coli BW25113 0.66 b3212 gltB glutamate synthase, large subunit (NCBI) 0.76 b3941 metF 5,10-methylenetetrahydrofolate reductase (NCBI) 0.54 18
Escherichia coli ECRC62 0.66 BNILDI_01850 gltB glutamate synthase large subunit 0.76 BNILDI_05725 metF methylenetetrahydrofolate reductase 0.96 9
Escherichia coli ECRC101 0.66 MCAODC_08405 gltB glutamate synthase large subunit 0.76 MCAODC_04165 metF methylenetetrahydrofolate reductase low > 87
Escherichia coli ECRC98 0.66 JDDGAC_21510 gltB glutamate synthase large subunit 0.76 JDDGAC_17290 metF methylenetetrahydrofolate reductase 0.92 27
Escherichia coli ECRC100 0.66 OKFHMN_17885 gltB glutamate synthase large subunit 0.76 OKFHMN_13665 metF methylenetetrahydrofolate reductase 0.94 9
Escherichia coli HS(pFamp)R (ATCC 700891) 0.66 OHPLBJKB_00488 Glutamate synthase [NADPH] large chain 0.76 OHPLBJKB_04109 5,10-methylenetetrahydrofolate reductase low > 73
Klebsiella michiganensis M5al 0.66 BWI76_RS25315 glutamate synthase large subunit 0.76 BWI76_RS00805 5,10-methylenetetrahydrofolate reductase 0.67 16
Escherichia coli ECRC102 0.66 NIAGMN_15645 gltB glutamate synthase large subunit 0.76 NIAGMN_11420 metF methylenetetrahydrofolate reductase
Escherichia coli ECOR27 0.66 NOLOHH_09685 gltB glutamate synthase large subunit 0.76 NOLOHH_05810 metF methylenetetrahydrofolate reductase 0.93 18
Escherichia coli ECRC99 0.66 KEDOAH_10265 gltB glutamate synthase large subunit 0.76 KEDOAH_14495 metF methylenetetrahydrofolate reductase
Enterobacter sp. TBS_079 0.66 MPMX20_04126 Glutamate synthase [NADPH] large chain 0.75 MPMX20_04529 5,10-methylenetetrahydrofolate reductase 0.49 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.66 GFF2956 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.77 GFF2329 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) low > 78
Enterobacter asburiae PDN3 0.66 EX28DRAFT_3275 Glutamate synthase domain 2 0.76 EX28DRAFT_4413 5,10-methylenetetrahydrofolate reductase, prokaryotic form low > 76
Pseudomonas sp. S08-1 0.59 OH686_10005 Glutamate synthase [NADPH] large chain 0.35 OH686_10820 methylenetetrahydrofolate reductase [NAD(P)H] 0.74 30
Pseudomonas fluorescens FW300-N2E2 0.58 Pf6N2E2_3752 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.37 Pf6N2E2_4638 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.58 39
Pseudomonas stutzeri RCH2 0.58 Psest_3711 Glutamate synthase domain 2 0.36 Psest_0313 5,10-methylenetetrahydrofolate reductase, prokaryotic form 0.41 24
Pseudomonas fluorescens FW300-N2C3 0.58 AO356_09375 glutamate synthase 0.36 AO356_13605 5,10-methylenetetrahydrofolate reductase 0.75 6
Marinobacter adhaerens HP15 0.58 HP15_482 glutamate synthase subunit alpha 0.36 HP15_2917 5,10-methylenetetrahydrofolate reductase-like protein
Pseudomonas sp. RS175 0.58 PFR28_05015 Glutamate synthase [NADPH] large chain 0.37 PFR28_04202 5,10-methylenetetrahydrofolate reductase 0.29 47
Pseudomonas fluorescens GW456-L13 0.58 PfGW456L13_272 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.36 PfGW456L13_1050 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.40 41
Pseudomonas fluorescens FW300-N2E3 0.58 AO353_12515 glutamate synthase 0.37 AO353_08015 5,10-methylenetetrahydrofolate reductase 0.71 33
Pseudomonas syringae pv. syringae B728a 0.58 Psyr_0411 glutamate synthase (NADPH) large subunit 0.35 Psyr_0459 5,10-methylenetetrahydrofolate reductase 0.48 83
Pseudomonas syringae pv. syringae B728a ΔmexB 0.58 Psyr_0411 glutamate synthase (NADPH) large subunit 0.35 Psyr_0459 5,10-methylenetetrahydrofolate reductase low > 86
Pseudomonas putida KT2440 0.58 PP_5076 L-glutamate synthase(NADPH) alpha subunit 0.37 PP_4977 5,10-methylenetetrahydrofolate reductase low > 96
Pseudomonas simiae WCS417 0.58 PS417_02000 glutamate synthase 0.36 PS417_26510 5,10-methylenetetrahydrofolate reductase low > 88
Pseudomonas fluorescens SBW25-INTG 0.58 PFLU_RS02045 glutamate synthase large subunit 0.37 PFLU_RS28165 methylenetetrahydrofolate reductase [NAD(P)H] low > 109
Pseudomonas fluorescens SBW25 0.58 PFLU_RS02045 glutamate synthase large subunit 0.37 PFLU_RS28165 methylenetetrahydrofolate reductase [NAD(P)H] low > 109
Pseudomonas fluorescens FW300-N1B4 0.57 Pf1N1B4_1534 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.37 Pf1N1B4_2384 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.72 38
Acinetobacter radioresistens SK82 0.56 MPMX26_02808 Glutamate synthase [NADPH] large chain 0.31 MPMX26_01002 5,10-methylenetetrahydrofolate reductase low > 36
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.44.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.34 Xcc-8004.4336.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) low > 74
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS10960 glutamate synthase large subunit 0.35 LRK54_RS12030 methylenetetrahydrofolate reductase [NAD(P)H] 0.83 18
Rhodanobacter denitrificans MT42 0.50 LRK55_RS10665 glutamate synthase large subunit 0.35 LRK55_RS11765 methylenetetrahydrofolate reductase [NAD(P)H] low > 63
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS16795 glutamate synthase large subunit 0.35 ABZR86_RS11570 methylenetetrahydrofolate reductase [NAD(P)H] 0.88 39
Parabacteroides merdae CL09T00C40 0.41 HMPREF1078_RS01270 glutamate synthase large subunit 0.18 HMPREF1078_RS07860 methylenetetrahydrofolate reductase [NAD(P)H] low > 61
Bacteroides ovatus ATCC 8483 0.41 BACOVA_03756 class II glutamine amidotransferase 0.15 BACOVA_03666 methylenetetrahydrofolate reductase (NAD(P)H) low > 94
Bosea sp. OAE506 0.41 ABIE41_RS08565 glutamate synthase large subunit 0.51 ABIE41_RS12475 methylenetetrahydrofolate reductase [NAD(P)H] low > 77
Bacteroides thetaiotaomicron VPI-5482 0.41 BT0553 glutamate synthase, large subunit (NCBI ptt file) 0.18 BT3821 5,10-methylenetetrahydrofolate reductase (NCBI ptt file) 0.46 25
Phocaeicola vulgatus CL09T03C04 0.41 HMPREF1058_RS06920 glutamate synthase large subunit 0.17 HMPREF1058_RS01490 methylenetetrahydrofolate reductase [NAD(P)H] low > 67
Bacteroides stercoris CC31F 0.41 HMPREF1181_RS16055 glutamate synthase large subunit 0.17 HMPREF1181_RS00120 methylenetetrahydrofolate reductase [NAD(P)H] low > 56
Phocaeicola dorei CL03T12C01 0.41 ABI39_RS20685 glutamate synthase large subunit 0.18 ABI39_RS15570 methylenetetrahydrofolate reductase [NAD(P)H] low > 72
Azospirillum sp. SherDot2 0.41 MPMX19_02657 Glutamate synthase [NADPH] large chain 0.53 MPMX19_00635 5,10-methylenetetrahydrofolate reductase 0.81 22
Rhodopseudomonas palustris CGA009 0.41 TX73_004590 glutamate synthase large subunit 0.46 TX73_019175 methylenetetrahydrofolate reductase [NAD(P)H]
Dechlorosoma suillum PS 0.40 Dsui_1096 glutamate synthase family protein 0.34 Dsui_0640 5,10-methylenetetrahydrofolate reductase
Rhizobium sp. OAE497 0.40 ABIE40_RS16275 glutamate synthase large subunit 0.41 ABIE40_RS11950 methylenetetrahydrofolate reductase [NAD(P)H]
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS08700 glutamate synthase large subunit 0.20 CA265_RS23445 methylenetetrahydrofolate reductase [NAD(P)H] 0.83 21
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS19595 glutamate synthase 0.32 HSERO_RS21425 5,10-methylenetetrahydrofolate reductase 0.44 70
Rhodospirillum rubrum S1H 0.40 Rru_A0019 Glutamate synthase (ferredoxin) (NCBI) 0.51 Rru_A1530 5,10-methylenetetrahydrofolate reductase (NCBI)
Sinorhizobium meliloti 1021 0.40 SMc04028 glutamate synthase 0.35 SMc01843 5,10-methylenetetrahydrofolate reductase 0.90 8
Ralstonia solanacearum GMI1000 0.40 RS_RS14860 glutamate synthase subunit alpha 0.36 RS_RS00460 methylenetetrahydrofolate reductase [NAD(P)H] 0.69 8
Mucilaginibacter yixingensis YX-36 DSM 26809 0.40 ABZR88_RS06905 glutamate synthase large subunit 0.20 ABZR88_RS20935 methylenetetrahydrofolate reductase [NAD(P)H] low > 71
Ralstonia solanacearum UW163 0.40 UW163_RS06700 glutamate synthase subunit alpha 0.36 UW163_RS03705 methylenetetrahydrofolate reductase [NAD(P)H]
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS06915 glutamate synthase subunit alpha 0.36 RALBFv3_RS09875 methylenetetrahydrofolate reductase [NAD(P)H] 0.60 12
Agrobacterium fabrum C58 0.40 Atu3784 glutamate synthase large subunit 0.38 Atu2123 methylenetetrahydrofolate reductase 0.62 80
Ralstonia solanacearum PSI07 0.40 RPSI07_RS10320 glutamate synthase subunit alpha 0.36 RPSI07_RS23495 methylenetetrahydrofolate reductase [NAD(P)H] 0.84 5
Paraburkholderia sabiae LMG 24235 0.40 QEN71_RS28010 glutamate synthase-related protein 0.37 QEN71_RS28715 methylenetetrahydrofolate reductase [NAD(P)H] 0.80 26
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS02570 glutamate synthase-related protein 0.36 ABZR87_RS04865 methylenetetrahydrofolate reductase [NAD(P)H] 0.76 31
Variovorax sp. OAS795 0.39 ABID97_RS23225 glutamate synthase-related protein 0.31 ABID97_RS25015 methylenetetrahydrofolate reductase [NAD(P)H] 0.69 7
Paraburkholderia bryophila 376MFSha3.1 0.39 H281DRAFT_05620 glutamate synthase (NADH) large subunit 0.36 H281DRAFT_05801 5,10-methylenetetrahydrofolate reductase (NAD(P)) 0.71 13
Cupriavidus basilensis FW507-4G11 0.39 RR42_RS18990 glutamate synthase 0.36 RR42_RS01385 5,10-methylenetetrahydrofolate reductase 0.61 28
Castellaniella sp019104865 MT123 0.39 ABCV34_RS11150 glutamate synthase-related protein 0.34 ABCV34_RS13550 methylenetetrahydrofolate reductase [NAD(P)H] low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.39 GFF1327 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.33 GFF1692 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
Burkholderia phytofirmans PsJN 0.39 BPHYT_RS17855 glutamate synthase 0.35 BPHYT_RS18705 5,10-methylenetetrahydrofolate reductase 0.51 100
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_1800 Glutamate synthase domain 2 0.54 Ga0059261_0992 5,10-methylenetetrahydrofolate reductase, prokaryotic form low > 68
Variovorax sp. SCN45 0.39 GFF5332 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.31 GFF2055 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.93 32
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_15200 Glutamate synthase subunit alpha 0.35 OKGIIK_11830 metF methylenetetrahydrofolate reductase [NAD(P)H] low > 52
Acidovorax sp. GW101-3H11 0.39 Ac3H11_4710 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.33 Ac3H11_3045 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.79 15
Magnetospirillum magneticum AMB-1 0.39 AMB_RS02685 glutamate synthase large subunit 0.54 AMB_RS02230 methylenetetrahydrofolate reductase
Phaeobacter inhibens DSM 17395 0.39 PGA1_c36100 glutamate synthase [NADPH] large chain 0.38 PGA1_c11700 5,10-methylenetetrahydrofolate reductase MetF 0.68 22
Echinicola vietnamensis KMM 6221, DSM 17526 0.39 Echvi_1244 Glutamate synthase domain 2 0.20 Echvi_3637 5,10-methylenetetrahydrofolate reductase, prokaryotic form 0.91 16
Dinoroseobacter shibae DFL-12 0.38 Dshi_0002 Glutamate synthase (ferredoxin) (RefSeq) 0.38 Dshi_2080 5,10-methylenetetrahydrofolate reductase (RefSeq)
Caulobacter crescentus NA1000 Δfur 0.38 CCNA_03722 glutamate synthase (NADPH) large chain GltB 0.47 CCNA_02224 methylenetetrahydrofolate reductase low > 67
Caulobacter crescentus NA1000 0.38 CCNA_03722 glutamate synthase (NADPH) large chain GltB 0.47 CCNA_02224 methylenetetrahydrofolate reductase 0.88 19
Bifidobacterium breve UCC2003 0.37 BBR_RS15255 glutamate synthase large subunit 0.22 BBR_RS15410 methylenetetrahydrofolate reductase [NAD(P)H] low > 34
Brevundimonas sp. GW460-12-10-14-LB2 0.37 A4249_RS16105 glutamate synthase large subunit 0.46 A4249_RS07925 methylenetetrahydrofolate reductase [NAD(P)H] 0.99 24

Not shown: 2 genomes with orthologs for Sama_0857 only; 9 genomes with orthologs for Sama_3169 only