Conservation of cofitness between Sama_0857 and Sama_0259 in Shewanella amazonensis SB2B

75 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_0857 gltB glutamate synthase subunit alpha (RefSeq) 1.0 Sama_0259 argininosuccinate synthase (RefSeq) 0.88 4
Shewanella oneidensis MR-1 0.89 SO1325 gltB glutamate synthase, large subunit (NCBI ptt file) 0.92 SO0278 argG argininosuccinate synthase (NCBI ptt file) 0.88 23
Shewanella sp. ANA-3 0.89 Shewana3_3050 gltB glutamate synthase subunit alpha (RefSeq) 0.92 Shewana3_3902 argininosuccinate synthase (RefSeq) 0.86 39
Shewanella loihica PV-4 0.85 Shew_1032 gltB glutamate synthase subunit alpha (RefSeq) 0.87 Shew_0205 argininosuccinate synthase (RefSeq) 0.98 14
Serratia liquefaciens MT49 0.67 IAI46_22345 glutamate synthase large subunit 0.71 IAI46_24505 argininosuccinate synthase 0.92 1
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_12030 glutamate synthase large subunit 0.71 CSW01_13370 argininosuccinate synthase low > 62
Pectobacterium carotovorum WPP14 0.67 HER17_RS19910 glutamate synthase large subunit 0.16 HER17_RS21055 argininosuccinate synthase low > 75
Erwinia tracheiphila SCR3 0.66 LU632_RS21315 gltB glutamate synthase large subunit 0.72 LU632_RS19605 argininosuccinate synthase low > 74
Alteromonas macleodii MIT1002 0.66 MIT1002_03139 Glutamate synthase [NADPH] large chain precursor 0.77 MIT1002_00468 Argininosuccinate synthase 0.98 18
Klebsiella michiganensis M5al 0.66 BWI76_RS25315 glutamate synthase large subunit 0.15 BWI76_RS25115 argininosuccinate synthase 0.68 9
Enterobacter sp. TBS_079 0.66 MPMX20_04126 Glutamate synthase [NADPH] large chain 0.15 MPMX20_04077 Argininosuccinate synthase 0.55 56
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.66 GFF2956 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.15 GFF2913 Argininosuccinate synthase (EC 6.3.4.5) low > 78
Enterobacter asburiae PDN3 0.66 EX28DRAFT_3275 Glutamate synthase domain 2 0.15 EX28DRAFT_3224 argininosuccinate synthase (EC 6.3.4.5) 0.58 75
Pseudomonas sp. S08-1 0.59 OH686_10005 Glutamate synthase [NADPH] large chain 0.46 OH686_03930 argininosuccinate synthase 0.80 25
Pseudomonas fluorescens FW300-N2E2 0.58 Pf6N2E2_3752 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.46 Pf6N2E2_5590 Argininosuccinate synthase (EC 6.3.4.5) — —
Pseudomonas stutzeri RCH2 0.58 Psest_3711 Glutamate synthase domain 2 0.46 Psest_3121 argininosuccinate synthase — —
Marinobacter adhaerens HP15 0.58 HP15_482 glutamate synthase subunit alpha 0.49 HP15_2367 argininosuccinate synthase — —
Pseudomonas fluorescens FW300-N2C3 0.58 AO356_09375 glutamate synthase 0.46 AO356_18325 argininosuccinate synthase 0.74 15
Pseudomonas sp. RS175 0.58 PFR28_05015 Glutamate synthase [NADPH] large chain 0.46 PFR28_03353 Argininosuccinate synthase — —
Pseudomonas fluorescens GW456-L13 0.58 PfGW456L13_272 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.46 PfGW456L13_1749 Argininosuccinate synthase (EC 6.3.4.5) low > 87
Pseudomonas fluorescens FW300-N2E3 0.58 AO353_12515 glutamate synthase 0.46 AO353_04105 argininosuccinate synthase 0.77 18
Pseudomonas syringae pv. syringae B728a 0.58 Psyr_0411 glutamate synthase (NADPH) large subunit 0.45 Psyr_3892 argininosuccinate synthase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.58 Psyr_0411 glutamate synthase (NADPH) large subunit 0.45 Psyr_3892 argininosuccinate synthase — —
Pseudomonas putida KT2440 0.58 PP_5076 L-glutamate synthase(NADPH) alpha subunit 0.45 PP_1088 Argininosuccinate synthase 0.28 47
Pseudomonas simiae WCS417 0.58 PS417_02000 glutamate synthase 0.46 PS417_05640 argininosuccinate synthase — —
Pseudomonas fluorescens SBW25 0.58 PFLU_RS02045 glutamate synthase large subunit 0.46 PFLU_RS05725 argininosuccinate synthase — —
Pseudomonas fluorescens SBW25-INTG 0.58 PFLU_RS02045 glutamate synthase large subunit 0.46 PFLU_RS05725 argininosuccinate synthase — —
Pseudomonas fluorescens FW300-N1B4 0.57 Pf1N1B4_1534 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.46 Pf1N1B4_742 Argininosuccinate synthase (EC 6.3.4.5) 0.73 36
Acinetobacter radioresistens SK82 0.56 MPMX26_02808 Glutamate synthase [NADPH] large chain 0.15 MPMX26_02260 Argininosuccinate synthase low > 36
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.44.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.23 Xcc-8004.2318.1 Argininosuccinate synthase (EC 6.3.4.5) 0.93 13
Rhodanobacter denitrificans MT42 0.50 LRK55_RS10665 glutamate synthase large subunit 0.21 LRK55_RS02155 argininosuccinate synthase low > 63
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS10960 glutamate synthase large subunit 0.21 LRK54_RS02400 argininosuccinate synthase 0.88 5
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS16795 glutamate synthase large subunit 0.24 ABZR86_RS08715 arginosuccinate synthetase (EC 6.3.4.5) (from data) 0.87 46
Parabacteroides merdae CL09T00C40 0.41 HMPREF1078_RS01270 glutamate synthase large subunit 0.19 HMPREF1078_RS10575 argininosuccinate synthase low > 61
Synechococcus elongatus PCC 7942 0.41 Synpcc7942_0890 glsF glutamate synthase (ferredoxin) 0.41 Synpcc7942_0009 argG argininosuccinate synthase — —
Bacteroides ovatus ATCC 8483 0.41 BACOVA_03756 class II glutamine amidotransferase 0.19 BACOVA_03590 putative argininosuccinate synthase low > 94
Bosea sp. OAE506 0.41 ABIE41_RS08565 glutamate synthase large subunit 0.44 ABIE41_RS00340 argininosuccinate synthase — —
Phocaeicola vulgatus CL09T03C04 0.41 HMPREF1058_RS06920 glutamate synthase large subunit 0.19 HMPREF1058_RS08845 argininosuccinate synthase low > 67
Bacteroides thetaiotaomicron VPI-5482 0.41 BT0553 glutamate synthase, large subunit (NCBI ptt file) 0.19 BT3760 arginosuccinate synthetase (EC 6.3.4.5) (from data) low > 81
Bacteroides stercoris CC31F 0.41 HMPREF1181_RS16055 glutamate synthase large subunit 0.18 HMPREF1181_RS03460 argininosuccinate synthase low > 56
Phocaeicola dorei CL03T12C01 0.41 ABI39_RS20685 glutamate synthase large subunit 0.19 ABI39_RS02975 argininosuccinate synthase low > 72
Azospirillum sp. SherDot2 0.41 MPMX19_02657 Glutamate synthase [NADPH] large chain 0.47 MPMX19_02369 Argininosuccinate synthase — —
Rhodopseudomonas palustris CGA009 0.41 TX73_004590 glutamate synthase large subunit 0.17 TX73_002040 argininosuccinate synthase — —
Dechlorosoma suillum PS 0.40 Dsui_1096 glutamate synthase family protein 0.44 Dsui_3248 argininosuccinate synthase — —
Rhizobium sp. OAE497 0.40 ABIE40_RS16275 glutamate synthase large subunit 0.44 ABIE40_RS18150 argininosuccinate synthase — —
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS08700 glutamate synthase large subunit 0.20 CA265_RS18545 argininosuccinate synthase 0.83 23
Rhodospirillum rubrum S1H 0.40 Rru_A0019 Glutamate synthase (ferredoxin) (NCBI) 0.47 Rru_A3751 Argininosuccinate synthase (NCBI) — —
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS19595 glutamate synthase 0.17 HSERO_RS07180 argininosuccinate synthase — —
Sinorhizobium meliloti 1021 0.40 SMc04028 glutamate synthase 0.43 SMc03826 argininosuccinate synthase 0.71 76
Ralstonia solanacearum GMI1000 0.40 RS_RS14860 glutamate synthase subunit alpha 0.17 RS_RS12800 argininosuccinate synthase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.40 ABZR88_RS06905 glutamate synthase large subunit 0.19 ABZR88_RS15515 argininosuccinate synthase — —
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS06915 glutamate synthase subunit alpha 0.17 RALBFv3_RS05180 argininosuccinate synthase — —
Agrobacterium fabrum C58 0.40 Atu3784 glutamate synthase large subunit 0.42 Atu2667 argininosuccinate synthase — —
Ralstonia solanacearum UW163 0.40 UW163_RS06700 glutamate synthase subunit alpha 0.17 UW163_RS08445 argininosuccinate synthase — —
Paraburkholderia sabiae LMG 24235 0.40 QEN71_RS28010 glutamate synthase-related protein 0.17 QEN71_RS09235 argininosuccinate synthase 0.81 20
Ralstonia solanacearum PSI07 0.40 RPSI07_RS10320 glutamate synthase subunit alpha 0.17 RPSI07_RS12120 argininosuccinate synthase — —
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS02570 glutamate synthase-related protein 0.17 ABZR87_RS00835 argininosuccinate synthase 0.69 39
Variovorax sp. OAS795 0.39 ABID97_RS23225 glutamate synthase-related protein 0.16 ABID97_RS21670 argininosuccinate synthase — —
Paraburkholderia bryophila 376MFSha3.1 0.39 H281DRAFT_05620 glutamate synthase (NADH) large subunit 0.45 H281DRAFT_04120 argininosuccinate synthase 0.73 11
Cupriavidus basilensis FW507-4G11 0.39 RR42_RS18990 glutamate synthase 0.46 RR42_RS17170 argininosuccinate synthase — —
Castellaniella sp019104865 MT123 0.39 ABCV34_RS11150 glutamate synthase-related protein 0.18 ABCV34_RS05390 argininosuccinate synthase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.39 GFF1327 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.18 GFF294 Argininosuccinate synthase (EC 6.3.4.5) — —
Burkholderia phytofirmans PsJN 0.39 BPHYT_RS17855 glutamate synthase 0.45 BPHYT_RS15920 argininosuccinate synthase 0.88 6
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_1800 Glutamate synthase domain 2 0.47 Ga0059261_1393 argininosuccinate synthase (EC 6.3.4.5) 0.78 34
Variovorax sp. SCN45 0.39 GFF5332 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.15 GFF3096 Argininosuccinate synthase (EC 6.3.4.5) — —
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_15200 Glutamate synthase subunit alpha 0.22 OKGIIK_09465 argG argininosuccinate synthase low > 52
Acidovorax sp. GW101-3H11 0.39 Ac3H11_4710 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.16 Ac3H11_2616 Argininosuccinate synthase (EC 6.3.4.5) — —
Magnetospirillum magneticum AMB-1 0.39 AMB_RS02685 glutamate synthase large subunit 0.47 AMB_RS05720 argininosuccinate synthase — —
Mycobacterium tuberculosis H37Rv 0.39 Rv3859c Probable ferredoxin-dependent glutamate synthase [NADPH] (large subunit) GltB (L-glutamate synthase) (L-glutamate synthetase) (NADH-glutamate synthase) (glutamate synthase (NADH))(NADPH-GOGAT) 0.33 Rv1658 Probable argininosuccinate synthase ArgG — —
Phaeobacter inhibens DSM 17395 0.39 PGA1_c36100 glutamate synthase [NADPH] large chain 0.44 PGA1_c34920 argininosuccinate synthase ArgG — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.39 Echvi_1244 Glutamate synthase domain 2 0.19 Echvi_3846 argininosuccinate synthase 0.93 5
Dinoroseobacter shibae DFL-12 0.38 Dshi_0002 Glutamate synthase (ferredoxin) (RefSeq) 0.46 Dshi_3472 Argininosuccinate synthase (RefSeq) 0.34 27
Caulobacter crescentus NA1000 0.38 CCNA_03722 glutamate synthase (NADPH) large chain GltB 0.44 CCNA_00128 argininosuccinate synthase — —
Caulobacter crescentus NA1000 Δfur 0.38 CCNA_03722 glutamate synthase (NADPH) large chain GltB 0.44 CCNA_00128 argininosuccinate synthase low > 67
Bifidobacterium breve UCC2003 0.37 BBR_RS15255 glutamate synthase large subunit 0.36 BBR_RS13915 argininosuccinate synthase low > 34
Brevundimonas sp. GW460-12-10-14-LB2 0.37 A4249_RS16105 glutamate synthase large subunit 0.45 A4249_RS14275 argininosuccinate synthase 0.99 7

Not shown: 17 genomes with orthologs for Sama_0857 only; 10 genomes with orthologs for Sama_0259 only