| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Bacteroides thetaiotaomicron VPI-5482 | 1.0 | BT3073 | | putative TIM-barrel enzyme, possible dehydrogenase, contains a highly conserved dihydrouridine synthase domain (NCBI ptt file) | 1.0 | BT3195 | | conserved hypothetical protein (NCBI ptt file) | 0.42 | 15 |
| Bacteroides ovatus ATCC 8483 | 0.94 | BACOVA_02724 | | TIM-barrel protein, nifR3 family | 0.97 | BACOVA_02895 | | tRNA-i(6)A37 thiotransferase enzyme MiaB | low | > 94 |
| Bacteroides stercoris CC31F | 0.89 | HMPREF1181_RS01530 | | tRNA dihydrouridine synthase DusB | 0.94 | HMPREF1181_RS01770 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 56 |
| Phocaeicola vulgatus CL09T03C04 | 0.86 | HMPREF1058_RS10945 | | tRNA dihydrouridine synthase DusB | 0.88 | HMPREF1058_RS11280 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.85 | ABI39_RS06125 | | tRNA dihydrouridine synthase DusB | 0.88 | ABI39_RS05650 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.65 | 17 |
| Parabacteroides merdae CL09T00C40 | 0.78 | HMPREF1078_RS05375 | | tRNA dihydrouridine synthase DusB | 0.74 | HMPREF1078_RS17135 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 61 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.56 | CA264_17860 | | tRNA dihydrouridine synthase DusB | 0.53 | CA264_05315 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 74 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.54 | Echvi_1531 | | putative TIM-barrel protein, nifR3 family | 0.54 | Echvi_2376 | | tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | low | > 79 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.52 | ABZR88_RS22340 | | tRNA dihydrouridine synthase DusB | 0.51 | ABZR88_RS18330 | | MiaB/RimO family radical SAM methylthiotransferase | low | > 71 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.52 | CA265_RS21125 | | tRNA dihydrouridine synthase DusB | 0.48 | CA265_RS21675 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 88 |
| Magnetospirillum magneticum AMB-1 | 0.35 | AMB_RS11940 | | tRNA dihydrouridine synthase DusB | 0.32 | AMB_RS22585 | | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | low | > 64 |
| Alteromonas macleodii MIT1002 | 0.34 | MIT1002_03957 | | putative tRNA-dihydrouridine synthase | 0.37 | MIT1002_01480 | | (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB | low | > 70 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.33 | H281DRAFT_04249 | | tRNA-U20-dihydrouridine synthase | 0.34 | H281DRAFT_04239 | | tRNA-i(6)A37 thiotransferase enzyme MiaB | low | > 103 |
| Shewanella amazonensis SB2B | 0.33 | Sama_3225 | | tRNA-dihydrouridine synthase B (RefSeq) | 0.34 | Sama_2575 | | tRNA-i(6)A37 modification enzyme MiaB (RefSeq) | low | > 62 |
| Castellaniella sp019104865 MT123 | 0.33 | ABCV34_RS07960 | | tRNA dihydrouridine synthase DusB | 0.38 | ABCV34_RS15345 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | 0.79 | 33 |
| Ralstonia sp. UNC404CL21Col | 0.33 | ABZR87_RS07650 | | tRNA dihydrouridine synthase DusB | 0.35 | ABZR87_RS07780 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 80 |
| Ralstonia solanacearum UW163 | 0.33 | UW163_RS01890 | | tRNA dihydrouridine synthase DusB | 0.34 | UW163_RS01760 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.33 | RALBFv3_RS11695 | | tRNA dihydrouridine synthase DusB | 0.34 | RALBFv3_RS11825 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 76 |
| Pseudomonas sp. S08-1 | 0.33 | OH686_07610 | | tRNA-dihydrouridine synthase DusB | 0.35 | OH686_09215 | | tRNA-i(6)A37 thiotransferase enzyme MiaB | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.33 | RPSI07_RS21520 | | tRNA dihydrouridine synthase DusB | 0.34 | RPSI07_RS21380 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 81 |
| Pseudomonas stutzeri RCH2 | 0.33 | Psest_1016 | | putative TIM-barrel protein, nifR3 family | 0.33 | Psest_0532 | | tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | low | > 67 |
| Cupriavidus basilensis FW507-4G11 | 0.33 | RR42_RS02730 | | tRNA-dihydrouridine synthase B | 0.35 | RR42_RS02855 | | dimethylallyladenosine tRNA methylthiotransferase | low | > 128 |
| Kangiella aquimarina DSM 16071 | 0.33 | B158DRAFT_0164 | | tRNA-U20-dihydrouridine synthase | 0.33 | B158DRAFT_0099 | | tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | low | > 40 |
| Serratia liquefaciens MT49 | 0.33 | IAI46_22775 | | tRNA dihydrouridine synthase DusB | 0.35 | IAI46_06025 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 86 |
| Rahnella sp. WP5 | 0.33 | EX31_RS12180 | | tRNA dihydrouridine synthase DusB | 0.34 | EX31_RS23205 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 89 |
| Acinetobacter radioresistens SK82 | 0.33 | MPMX26_02127 | | tRNA-dihydrouridine synthase B | 0.32 | MPMX26_02667 | | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | low | > 36 |
| Paraburkholderia sabiae LMG 24235 | 0.33 | QEN71_RS26770 | | tRNA dihydrouridine synthase DusB | 0.35 | QEN71_RS02195 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 153 |
| Enterobacter sp. TBS_079 | 0.33 | MPMX20_04169 | | tRNA-dihydrouridine synthase B | 0.34 | MPMX20_01311 | | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | low | > 85 |
| Dickeya dianthicola ME23 | 0.32 | DZA65_RS01355 | | tRNA dihydrouridine synthase DusB | 0.34 | DZA65_RS06640 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 75 |
| Ralstonia solanacearum GMI1000 | 0.32 | RS_RS02515 | | tRNA dihydrouridine synthase DusB | 0.34 | RS_RS02645 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 80 |
| Dyella japonica UNC79MFTsu3.2 | 0.32 | ABZR86_RS11525 | | tRNA dihydrouridine synthase DusB | 0.34 | ABZR86_RS09895 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 74 |
| Shewanella oneidensis MR-1 | 0.32 | SO0394 | | conserved hypothetical protein (NCBI ptt file) | 0.33 | SO1181 | miaB | tRNA-i(6)A37 modification enzyme MiaB (NCBI ptt file) | low | > 76 |
| Klebsiella michiganensis M5al | 0.32 | BWI76_RS25565 | | tRNA dihydrouridine synthase DusB | 0.36 | BWI76_RS08135 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | — | — |
| Dickeya dianthicola 67-19 | 0.32 | HGI48_RS01295 | | tRNA dihydrouridine synthase DusB | 0.34 | HGI48_RS06295 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 71 |
| Shewanella sp. ANA-3 | 0.32 | Shewana3_0399 | | nifR3 family TIM-barrel protein (RefSeq) | 0.33 | Shewana3_1008 | | tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) | low | > 73 |
| Dickeya dadantii 3937 | 0.32 | DDA3937_RS01375 | | tRNA dihydrouridine synthase DusB | 0.34 | DDA3937_RS06250 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 74 |
| Enterobacter asburiae PDN3 | 0.32 | EX28DRAFT_3313 | | putative TIM-barrel protein, nifR3 family | 0.34 | EX28DRAFT_2310 | | tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | low | > 76 |
| Burkholderia phytofirmans PsJN | 0.32 | BPHYT_RS16585 | | tRNA-dihydrouridine synthase B | 0.35 | BPHYT_RS16535 | | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | low | > 109 |
| Azospirillum sp. SherDot2 | 0.32 | MPMX19_01110 | | tRNA-dihydrouridine synthase B | 0.33 | MPMX19_02511 | | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | low | > 112 |
| Escherichia coli ECRC62 | 0.31 | BNILDI_02050 | dusB | tRNA dihydrouridine synthase DusB | 0.35 | BNILDI_21610 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | — | — |
| Marinobacter adhaerens HP15 | 0.31 | HP15_3225 | | tRNA-dihydrouridine synthase B | 0.34 | HP15_2466 | | tRNA-i(6)A37 thiotransferase enzyme MiaB | low | > 73 |
| Escherichia coli ECRC101 | 0.31 | OKFHMN_17685 | dusB | tRNA dihydrouridine synthase DusB | 0.35 | OKFHMN_07225 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | — | — |
| Escherichia coli BL21 | 0.31 | ECD_03118 | | tRNA-dihydrouridine synthase B | 0.35 | ECD_00629 | | tRNA-i(6)A37 methylthiotransferase | low | > 60 |
| Escherichia coli BW25113 | 0.31 | b3260 | dusB | tRNA-dihydrouridine synthase B (NCBI) | 0.35 | b0661 | miaB | isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) | low | > 76 |
| Escherichia coli ECOR27 | 0.31 | NOLOHH_09470 | dusB | tRNA dihydrouridine synthase DusB | 0.35 | NOLOHH_23605 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 57 |
| Escherichia coli ECRC102 | 0.31 | NIAGMN_15445 | dusB | tRNA dihydrouridine synthase DusB | 0.35 | NIAGMN_05280 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | — | — |
| Escherichia fergusonii Becca | 0.31 | EFB2_00564 | | tRNA-dihydrouridine synthase B | 0.35 | EFB2_03438 | | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | low | > 86 |
| Escherichia coli ECOR38 | 0.31 | HEPCGN_16505 | dusB | tRNA dihydrouridine synthase DusB | 0.35 | HEPCGN_01005 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 85 |
| Escherichia coli Nissle 1917 | 0.31 | ECOLIN_RS18725 | | tRNA dihydrouridine synthase DusB | 0.35 | ECOLIN_RS03555 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | — | — |
| Escherichia coli ECRC101 | 0.31 | MCAODC_08205 | dusB | tRNA dihydrouridine synthase DusB | 0.35 | MCAODC_26440 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | — | — |
| Pectobacterium carotovorum WPP14 | 0.31 | HER17_RS20235 | | tRNA dihydrouridine synthase DusB | 0.34 | HER17_RS15165 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 75 |
| Lysobacter sp. OAE881 | 0.31 | ABIE51_RS16450 | | tRNA dihydrouridine synthase DusB | 0.35 | ABIE51_RS15455 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 62 |
| Rhodanobacter denitrificans MT42 | 0.31 | LRK55_RS11875 | | tRNA dihydrouridine synthase DusB | 0.35 | LRK55_RS13465 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 63 |
| Variovorax sp. OAS795 | 0.31 | ABID97_RS24735 | | tRNA dihydrouridine synthase DusB | 0.34 | ABID97_RS06475 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 91 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.31 | GFF634 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | 0.35 | GFF613 | | tRNA-i(6)A37 methylthiotransferase | low | > 90 |
| Rhodanobacter sp. FW510-T8 | 0.31 | OKGIIK_11770 | dusB | tRNA dihydrouridine synthase DusB | 0.33 | OKGIIK_02990 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.31 | LRK54_RS12140 | | tRNA dihydrouridine synthase DusB | 0.34 | LRK54_RS13750 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 59 |
| Pantoea sp. MT58 | 0.31 | IAI47_02385 | | tRNA dihydrouridine synthase DusB | 0.35 | IAI47_13945 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 76 |
| Shewanella loihica PV-4 | 0.30 | Shew_0330 | | nifR3 family TIM-barrel protein (RefSeq) | 0.33 | Shew_2923 | | tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) | low | > 60 |
| Azospirillum brasilense Sp245 | 0.30 | AZOBR_RS14420 | | tRNA-dihydrouridine synthase | 0.32 | AZOBR_RS01475 | | (dimethylallyl)adenosine tRNA methylthiotransferase | low | > 97 |
| Pseudomonas fluorescens GW456-L13 | 0.30 | PfGW456L13_55 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | 0.32 | PfGW456L13_1380 | | tRNA-i(6)A37 methylthiotransferase | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.30 | AO353_13660 | | tRNA-dihydrouridine synthase B | 0.32 | AO353_06375 | | (dimethylallyl)adenosine tRNA methylthiotransferase | low | > 101 |
| Acidovorax sp. GW101-3H11 | 0.30 | Ac3H11_3996 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | 0.35 | Ac3H11_4008 | | tRNA-i(6)A37 methylthiotransferase | low | > 79 |
| Pseudomonas fluorescens FW300-N2C3 | 0.30 | AO356_08215 | | tRNA-dihydrouridine synthase B | 0.33 | AO356_15410 | | (dimethylallyl)adenosine tRNA methylthiotransferase | low | > 104 |
| Pseudomonas fluorescens FW300-N1B4 | 0.29 | Pf1N1B4_1313 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | 0.32 | Pf1N1B4_2712 | | tRNA-i(6)A37 methylthiotransferase | low | > 87 |
| Pseudomonas sp. RS175 | 0.29 | PFR28_05216 | | tRNA-dihydrouridine synthase B | 0.32 | PFR28_03848 | | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | low | > 88 |
| Herbaspirillum seropedicae SmR1 | 0.29 | HSERO_RS02050 | | tRNA-dihydrouridine synthase B | 0.37 | HSERO_RS03615 | | (dimethylallyl)adenosine tRNA methylthiotransferase | low | > 78 |
| Pseudomonas fluorescens FW300-N2E2 | 0.29 | Pf6N2E2_3517 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | 0.32 | Pf6N2E2_5018 | | tRNA-i(6)A37 methylthiotransferase | low | > 103 |
| Vibrio cholerae E7946 ATCC 55056 | 0.29 | CSW01_01495 | | tRNA dihydrouridine synthase DusB | 0.32 | CSW01_04915 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 62 |
| Pseudomonas simiae WCS417 | 0.29 | PS417_02950 | | tRNA-dihydrouridine synthase B | 0.32 | PS417_24625 | | (dimethylallyl)adenosine tRNA methylthiotransferase | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.29 | PFLU_RS03025 | | tRNA dihydrouridine synthase DusB | 0.32 | PFLU_RS26555 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 109 |
| Escherichia coli ECRC98 | 0.29 | JDDGAC_21310 | dusB | tRNA dihydrouridine synthase DusB | 0.35 | JDDGAC_10870 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | — | — |
| Escherichia coli ECRC99 | 0.29 | KEDOAH_10465 | dusB | tRNA dihydrouridine synthase DusB | 0.35 | KEDOAH_20745 | miaB | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | — | — |
| Pseudomonas fluorescens SBW25 | 0.29 | PFLU_RS03025 | | tRNA dihydrouridine synthase DusB | 0.32 | PFLU_RS26555 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 109 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.29 | Psyr_4404 | | tRNA-U20-dihydrouridine synthase | 0.32 | Psyr_4345 | | tRNA-i(6)A37 thiotransferase enzyme MiaB | low | > 86 |
| Rhodopseudomonas palustris CGA009 | 0.29 | TX73_013410 | | tRNA dihydrouridine synthase DusB | 0.28 | TX73_002325 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.29 | Psyr_4404 | | tRNA-U20-dihydrouridine synthase | 0.32 | Psyr_4345 | | tRNA-i(6)A37 thiotransferase enzyme MiaB | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.28 | OHPLBJKB_00445 | | putative tRNA-dihydrouridine synthase | 0.35 | OHPLBJKB_03051 | | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase | low | > 73 |
| Sphingomonas koreensis DSMZ 15582 | 0.28 | Ga0059261_0140 | | tRNA-U20-dihydrouridine synthase | 0.29 | Ga0059261_1604 | | tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB | low | > 68 |
| Rhodospirillum rubrum S1H | 0.28 | Rru_A1676 | | Dihydrouridine synthase TIM-barrel protein nifR3 (NCBI) | 0.32 | Rru_A3770 | | tRNA-i(6)A37 modification enzyme MiaB (NCBI) | low | > 58 |
| Caulobacter crescentus NA1000 Δfur | 0.24 | CCNA_01813 | | tRNA-dihydrouridine synthase | 0.33 | CCNA_00054 | | tRNA 2-methylthioadenosine synthase | low | > 67 |
| Caulobacter crescentus NA1000 | 0.24 | CCNA_01813 | | tRNA-dihydrouridine synthase | 0.33 | CCNA_00054 | | tRNA 2-methylthioadenosine synthase | low | > 66 |
| Fusobacterium nucleatum SB010 | 0.23 | HUW76_04330 | | tRNA-dihydrouridine synthase | 0.34 | HUW76_07655 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 35 |
| Mycobacterium tuberculosis H37Rv | 0.23 | Rv0823c | | Possible transcriptional regulatory protein | 0.31 | Rv2733c | | Conserved hypothetical alanine, arginine-rich protein | low | > 58 |
| Synechococcus elongatus PCC 7942 | 0.23 | Synpcc7942_0283 | | Dihydrouridine synthase TIM-barrel protein nifR3 | 0.32 | Synpcc7942_2374 | | tRNA-i(6)A37 thiotransferase enzyme MiaB | low | > 38 |
| Desulfovibrio vulgaris Miyazaki F | 0.20 | DvMF_2019 | | dihydrouridine synthase DuS (RefSeq) | 0.28 | DvMF_1330 | | RNA modification enzyme, MiaB family (RefSeq) | low | > 51 |
| Bosea sp. OAE506 | 0.12 | ABIE41_RS21285 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.32 | ABIE41_RS04495 | | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | low | > 77 |
Not shown: 2 genomes with orthologs for BT3073 only; 15 genomes with orthologs for BT3195 only