Conservation of cofitness between b2892 and b3822 in Escherichia coli BW25113

88 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2892 recJ ssDNA exonuclease, 5' --> 3'-specific (NCBI) 1.0 b3822 recQ ATP-dependent DNA helicase (NCBI) 0.47 7
Escherichia coli ECRC102 0.99 NIAGMN_17345 recJ single-stranded-DNA-specific exonuclease RecJ 1.00 NIAGMN_12115 recQ ATP-dependent DNA helicase RecQ — —
Escherichia coli ECRC101 0.99 OKFHMN_19580 recJ single-stranded-DNA-specific exonuclease RecJ 1.00 OKFHMN_14360 recQ ATP-dependent DNA helicase RecQ — —
Escherichia coli ECRC101 0.99 MCAODC_10100 recJ single-stranded-DNA-specific exonuclease RecJ 1.00 MCAODC_04865 recQ ATP-dependent DNA helicase RecQ — —
Escherichia coli ECRC99 0.99 KEDOAH_08560 recJ single-stranded-DNA-specific exonuclease RecJ 1.00 KEDOAH_13790 recQ ATP-dependent DNA helicase RecQ — —
Escherichia coli ECRC98 0.99 JDDGAC_23220 recJ single-stranded-DNA-specific exonuclease RecJ 1.00 JDDGAC_17985 recQ ATP-dependent DNA helicase RecQ — —
Escherichia fergusonii Becca 0.99 EFB2_01009 Single-stranded-DNA-specific exonuclease RecJ 1.00 EFB2_04815 ATP-dependent DNA helicase RecQ low > 86
Escherichia coli BL21 0.99 ECD_02724 ssDNA exonuclease, 5 1.00 ECD_03701 ATP-dependent DNA helicase 0.73 11
Escherichia coli ECOR27 0.99 NOLOHH_11505 recJ single-stranded-DNA-specific exonuclease RecJ 1.00 NOLOHH_06490 recQ ATP-dependent DNA helicase RecQ low > 57
Escherichia coli Nissle 1917 0.99 ECOLIN_RS16115 single-stranded-DNA-specific exonuclease RecJ 1.00 ECOLIN_RS21935 ATP-dependent DNA helicase RecQ low > 52
Escherichia coli ECRC62 0.99 BNILDI_10035 recJ single-stranded-DNA-specific exonuclease RecJ 1.00 BNILDI_05040 recQ ATP-dependent DNA helicase RecQ — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_00823 Single-stranded-DNA-specific exonuclease RecJ 1.00 OHPLBJKB_04229 ATP-dependent DNA helicase RecQ low > 73
Escherichia coli ECOR38 0.99 HEPCGN_18870 recJ single-stranded-DNA-specific exonuclease RecJ 1.00 HEPCGN_13060 recQ ATP-dependent DNA helicase RecQ low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF2989 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.95 GFF248 ATP-dependent DNA helicase RecQ 0.63 10
Enterobacter asburiae PDN3 0.90 EX28DRAFT_2943 single-stranded-DNA-specific exonuclease RecJ 0.92 EX28DRAFT_4487 ATP-dependent DNA helicase RecQ low > 76
Klebsiella michiganensis M5al 0.89 BWI76_RS23805 ssDNA exonuclease RecJ 0.92 BWI76_RS01245 DNA helicase RecQ low > 92
Enterobacter sp. TBS_079 0.89 MPMX20_03751 Single-stranded-DNA-specific exonuclease RecJ 0.93 MPMX20_04458 ATP-dependent DNA helicase RecQ low > 85
Serratia liquefaciens MT49 0.79 IAI46_20720 single-stranded-DNA-specific exonuclease RecJ 0.81 IAI46_00770 ATP-dependent DNA helicase RecQ 0.71 8
Pantoea sp. MT58 0.77 IAI47_03830 single-stranded-DNA-specific exonuclease RecJ 0.82 IAI47_18360 ATP-dependent DNA helicase RecQ low > 76
Dickeya dianthicola 67-19 0.77 HGI48_RS03450 single-stranded-DNA-specific exonuclease RecJ 0.80 HGI48_RS20005 ATP-dependent DNA helicase RecQ low > 71
Dickeya dianthicola ME23 0.77 DZA65_RS03495 single-stranded-DNA-specific exonuclease RecJ 0.80 DZA65_RS21045 ATP-dependent DNA helicase RecQ low > 75
Rahnella sp. WP5 0.76 EX31_RS13470 single-stranded-DNA-specific exonuclease RecJ 0.81 EX31_RS15210 ATP-dependent DNA helicase RecQ low > 89
Dickeya dadantii 3937 0.76 DDA3937_RS03310 single-stranded-DNA-specific exonuclease RecJ 0.80 DDA3937_RS19850 ATP-dependent DNA helicase RecQ low > 74
Erwinia tracheiphila SCR3 0.72 LU632_RS05985 recJ single-stranded-DNA-specific exonuclease RecJ 0.82 LU632_RS24095 recQ ATP-dependent DNA helicase RecQ low > 74
Pectobacterium carotovorum WPP14 0.72 HER17_RS17880 single-stranded-DNA-specific exonuclease RecJ 0.82 HER17_RS01395 ATP-dependent DNA helicase RecQ low > 75
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_12240 single-stranded-DNA-specific exonuclease RecJ 0.67 CSW01_01045 DNA helicase RecQ low > 62
Shewanella sp. ANA-3 0.58 Shewana3_3329 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.58 Shewana3_3763 ATP-dependent DNA helicase RecQ (RefSeq) 0.91 1
Shewanella loihica PV-4 0.57 Shew_0772 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.57 Shew_3474 ATP-dependent DNA helicase RecQ (RefSeq) 0.69 11
Shewanella oneidensis MR-1 0.57 SO0952 recJ single-stranded-DNA-specific exonuclease RecJ (NCBI ptt file) 0.58 SO4241 recQ ATP-dependent DNA helicase RecQ (NCBI ptt file) 0.75 1
Pseudomonas syringae pv. syringae B728a ΔmexB 0.57 Psyr_1298 exonuclease RecJ 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ low > 86
Pseudomonas simiae WCS417 0.57 PS417_22855 ssDNA exonuclease RecJ 0.45 PS417_19950 ATP-dependent DNA helicase RecQ low > 88
Pseudomonas syringae pv. syringae B728a 0.57 Psyr_1298 exonuclease RecJ 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ low > 86
Shewanella amazonensis SB2B 0.57 Sama_2737 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.58 Sama_0333 ATP-dependent DNA helicase RecQ (RefSeq) 0.83 2
Pseudomonas fluorescens SBW25 0.56 PFLU_RS24515 single-stranded-DNA-specific exonuclease RecJ 0.45 PFLU_RS21920 DNA helicase RecQ low > 109
Pseudomonas fluorescens SBW25-INTG 0.56 PFLU_RS24515 single-stranded-DNA-specific exonuclease RecJ 0.45 PFLU_RS21920 DNA helicase RecQ low > 109
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_06345 single-stranded-DNA-specific exonuclease RecJ 0.45 AO356_04050 ATP-dependent DNA helicase RecQ 0.51 2
Pseudomonas fluorescens FW300-N2E2 0.56 Pf6N2E2_3137 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.45 Pf6N2E2_2645 ATP-dependent DNA helicase RecQ 0.24 22
Pseudomonas sp. S08-1 0.56 OH686_06955 single-stranded-DNA-specific exonuclease RecJ 0.43 OH686_20670 ATP-dependent DNA helicase RecQ low > 80
Pseudomonas fluorescens FW300-N1B4 0.56 Pf1N1B4_3020 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.45 Pf1N1B4_3533 ATP-dependent DNA helicase RecQ low > 87
Pseudomonas putida KT2440 0.55 PP_1477 ssDNA-specific exonuclease RecJ 0.45 PP_4516 ATP-dependent DNA 3 low > 96
Pseudomonas sp. RS175 0.55 PFR28_00339 Single-stranded-DNA-specific exonuclease RecJ 0.45 PFR28_00788 ATP-dependent DNA helicase RecQ low > 88
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_1730 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.45 PfGW456L13_4423 ATP-dependent DNA helicase RecQ low > 87
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_04320 single-stranded-DNA-specific exonuclease RecJ 0.44 AO353_18430 ATP-dependent DNA helicase RecQ 0.47 11
Alteromonas macleodii MIT1002 0.53 MIT1002_00788 Single-stranded-DNA-specific exonuclease RecJ 0.53 MIT1002_00148 ATP-dependent DNA helicase RecQ low > 70
Pseudomonas stutzeri RCH2 0.53 Psest_1544 single-stranded-DNA-specific exonuclease RecJ 0.44 Psest_1869 ATP-dependent DNA helicase RecQ 0.51 1
Marinobacter adhaerens HP15 0.50 HP15_766 bacterial RecJ exonuclease 0.44 HP15_1718 ATP-dependent DNA helicase RecQ low > 73
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS02800 single-stranded-DNA-specific exonuclease RecJ 0.44 ABZR86_RS19925 DNA helicase RecQ 0.79 1
Dechlorosoma suillum PS 0.44 Dsui_2860 single-stranded-DNA-specific exonuclease RecJ 0.44 Dsui_3092 ATP-dependent DNA helicase RecQ — —
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.2909.1 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.42 Xcc-8004.1476.1 ATP-dependent DNA helicase RecQ low > 74
Rhodanobacter sp. FW510-T8 0.41 OKGIIK_06995 recJ single-stranded-DNA-specific exonuclease RecJ 0.44 OKGIIK_02375 recQ DNA helicase RecQ low > 52
Cupriavidus basilensis FW507-4G11 0.41 RR42_RS06090 single-stranded DNA exonuclease 0.42 RR42_RS19310 ATP-dependent DNA helicase RecQ 0.70 7
Herbaspirillum seropedicae SmR1 0.41 HSERO_RS13965 single-stranded DNA exonuclease 0.45 HSERO_RS02465 ATP-dependent DNA helicase RecQ 0.29 55
Ralstonia solanacearum GMI1000 0.41 RS_RS05550 single-stranded-DNA-specific exonuclease RecJ 0.41 RS_RS15155 DNA helicase RecQ low > 80
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS14740 single-stranded-DNA-specific exonuclease RecJ 0.41 RALBFv3_RS07220 DNA helicase RecQ low > 76
Ralstonia solanacearum UW163 0.41 UW163_RS12210 single-stranded-DNA-specific exonuclease RecJ 0.41 UW163_RS06400 DNA helicase RecQ — —
Ralstonia solanacearum PSI07 0.41 RPSI07_RS18620 single-stranded-DNA-specific exonuclease RecJ 0.41 RPSI07_RS10025 DNA helicase RecQ 0.51 58
Acidovorax sp. GW101-3H11 0.41 Ac3H11_1746 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.41 Ac3H11_3308 ATP-dependent DNA helicase RecQ — —
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS00315 single-stranded-DNA-specific exonuclease RecJ 0.44 LRK54_RS13000 DNA helicase RecQ low > 59
Paraburkholderia sabiae LMG 24235 0.41 QEN71_RS05835 single-stranded-DNA-specific exonuclease RecJ 0.42 QEN71_RS28295 DNA helicase RecQ low > 153
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS10395 single-stranded-DNA-specific exonuclease RecJ 0.42 ABZR87_RS02880 DNA helicase RecQ low > 80
Paraburkholderia bryophila 376MFSha3.1 0.40 H281DRAFT_00488 exonuclease RecJ 0.41 H281DRAFT_06595 ATP-dependent DNA helicase RecQ — —
Variovorax sp. OAS795 0.40 ABID97_RS22940 single-stranded-DNA-specific exonuclease RecJ 0.43 ABID97_RS03395 DNA helicase RecQ low > 91
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS12730 single-stranded DNA exonuclease 0.42 BPHYT_RS18145 ATP-dependent DNA helicase RecQ low > 109
Paraburkholderia graminis OAS925 0.39 ABIE53_002771 single-stranded-DNA-specific exonuclease 0.42 ABIE53_003792 ATP-dependent DNA helicase RecQ low > 113
Variovorax sp. SCN45 0.39 GFF6700 Single-stranded-DNA-specific exonuclease RecJ 0.40 GFF6415 ATP-dependent DNA helicase RecQ low > 127
Castellaniella sp019104865 MT123 0.38 ABCV34_RS05005 single-stranded-DNA-specific exonuclease RecJ 0.41 ABCV34_RS07985 DNA helicase RecQ low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.36 GFF739 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.40 GFF1958 ATP-dependent DNA helicase RecQ — —
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS07725 single-stranded-DNA-specific exonuclease RecJ 0.41 HMPREF1078_RS01195 DNA helicase RecQ low > 61
Rhizobium sp. OAE497 0.24 ABIE40_RS08655 single-stranded-DNA-specific exonuclease RecJ 0.44 ABIE40_RS12745 DNA helicase RecQ — —
Bacteroides thetaiotaomicron VPI-5482 0.24 BT3939 single-stranded-DNA-specific exonuclease recJ (NCBI ptt file) 0.41 BT1848 ATP-dependent DNA helicase recQ (NCBI ptt file) — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.24 ABZR88_RS18635 single-stranded-DNA-specific exonuclease RecJ 0.44 ABZR88_RS20865 DNA helicase RecQ low > 71
Phocaeicola vulgatus CL09T03C04 0.24 HMPREF1058_RS14835 single-stranded-DNA-specific exonuclease RecJ 0.44 HMPREF1058_RS14585 DNA helicase RecQ low > 67
Phocaeicola dorei CL03T12C01 0.24 ABI39_RS10550 single-stranded-DNA-specific exonuclease RecJ 0.44 ABI39_RS10235 DNA helicase RecQ — —
Pedobacter sp. GW460-11-11-14-LB5 0.24 CA265_RS25225 single-stranded-DNA-specific exonuclease RecJ 0.38 CA265_RS08905 DNA helicase RecQ — —
Bacteroides ovatus ATCC 8483 0.24 BACOVA_01165 single-stranded-DNA-specific exonuclease RecJ 0.41 BACOVA_04594 ATP-dependent DNA helicase RecQ — —
Rhodospirillum rubrum S1H 0.24 Rru_A2408 RecJ exonuclease (NCBI) 0.40 Rru_A0089 ATP-dependent DNA helicase RecQ (NCBI) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.24 Echvi_1332 single-stranded-DNA-specific exonuclease RecJ 0.43 Echvi_0784 ATP-dependent DNA helicase RecQ low > 79
Agrobacterium fabrum C58 0.24 Atu1586 single-stranded-DNA-specific exonuclease 0.44 Atu0061 ATP-dependent DNA helicase — —
Bacteroides stercoris CC31F 0.24 HMPREF1181_RS06545 single-stranded-DNA-specific exonuclease RecJ 0.42 HMPREF1181_RS14110 DNA helicase RecQ low > 56
Bosea sp. OAE506 0.24 ABIE41_RS19130 single-stranded-DNA-specific exonuclease RecJ 0.40 ABIE41_RS04160 DNA helicase RecQ low > 77
Pontibacter actiniarum KMM 6156, DSM 19842 0.23 CA264_17545 single-stranded-DNA-specific exonuclease RecJ 0.45 CA264_07560 DNA helicase RecQ 0.53 1
Azospirillum sp. SherDot2 0.23 MPMX19_00667 Single-stranded-DNA-specific exonuclease RecJ 0.42 MPMX19_00123 ATP-dependent DNA helicase RecQ — —
Rhodopseudomonas palustris CGA009 0.23 TX73_012960 single-stranded-DNA-specific exonuclease RecJ 0.42 TX73_025080 DNA helicase RecQ — —
Phaeobacter inhibens DSM 17395 0.23 PGA1_c08630 single-stranded-DNA-specific exonuclease RecJ 0.42 PGA1_c31900 ATP-dependent DNA helicase RecQ — —
Magnetospirillum magneticum AMB-1 0.23 AMB_RS18875 single-stranded-DNA-specific exonuclease RecJ 0.42 AMB_RS21505 DNA helicase RecQ — —
Dinoroseobacter shibae DFL-12 0.21 Dshi_2275 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.41 Dshi_3334 ATP-dependent DNA helicase RecQ (RefSeq) — —
Sphingomonas koreensis DSMZ 15582 0.21 Ga0059261_3089 single-stranded-DNA-specific exonuclease RecJ 0.37 Ga0059261_2261 ATP-dependent DNA helicase RecQ — —
Sinorhizobium meliloti 1021 0.19 SMc00292 single-stranded-DNA-specific exonuclease 0.42 SMc01566 ATP-dependent DNA helicase — —
Rhodanobacter denitrificans MT42 0.17 LRK55_RS18310 DHHA1 domain-containing protein 0.44 LRK55_RS12700 DNA helicase RecQ low > 63

Not shown: 4 genomes with orthologs for b2892 only; 7 genomes with orthologs for b3822 only