Conservation of cofitness between b3389 and b3771 in Escherichia coli BW25113

88 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3389 aroB 3-dehydroquinate synthase (NCBI) 1.0 b3771 ilvD dihydroxy-acid dehydratase (NCBI) 0.94 3
Escherichia coli ECOR27 1.00 NOLOHH_08905 aroB 3-dehydroquinate synthase 1.00 NOLOHH_06775 ilvD dihydroxy-acid dehydratase low > 57
Escherichia coli ECRC62 1.00 BNILDI_02615 aroB 3-dehydroquinate synthase 1.00 BNILDI_04750 ilvD dihydroxy-acid dehydratase — —
Escherichia coli BL21 1.00 ECD_03241 3-dehydroquinate synthase 1.00 ECD_03649 dihydroxyacid dehydratase low > 60
Escherichia coli ECOR38 1.00 HEPCGN_15935 aroB 3-dehydroquinate synthase 1.00 HEPCGN_13350 ilvD dihydroxy-acid dehydratase low > 85
Escherichia fergusonii Becca 1.00 EFB2_00439 3-dehydroquinate synthase 0.99 EFB2_04865 Dihydroxy-acid dehydratase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_00314 3-dehydroquinate synthase 1.00 OHPLBJKB_04282 Dihydroxy-acid dehydratase low > 73
Escherichia coli ECRC101 0.99 OKFHMN_17115 aroB 3-dehydroquinate synthase 1.00 OKFHMN_14640 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC99 0.99 KEDOAH_11025 aroB 3-dehydroquinate synthase 1.00 KEDOAH_13510 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC98 0.99 JDDGAC_20745 aroB 3-dehydroquinate synthase 1.00 JDDGAC_18260 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC101 0.99 MCAODC_07645 aroB 3-dehydroquinate synthase 1.00 MCAODC_05145 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC102 0.99 NIAGMN_14885 aroB 3-dehydroquinate synthase 1.00 NIAGMN_12395 ilvD dihydroxy-acid dehydratase — —
Escherichia coli Nissle 1917 0.99 ECOLIN_RS19360 3-dehydroquinate synthase 0.99 ECOLIN_RS21665 dihydroxy-acid dehydratase low > 52
Enterobacter sp. TBS_079 0.89 MPMX20_04278 3-dehydroquinate synthase 0.97 MPMX20_04499 Dihydroxy-acid dehydratase 0.85 8
Enterobacter asburiae PDN3 0.88 EX28DRAFT_4153 3-dehydroquinate synthase (EC 4.2.3.4) 0.96 EX28DRAFT_4443 dihydroxy-acid dehydratase 0.57 43
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.86 GFF630 3-dehydroquinate synthase (EC 4.2.3.4) 0.97 GFF2901 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 78
Klebsiella michiganensis M5al 0.85 BWI76_RS26085 3-dehydroquinate synthase 0.96 BWI76_RS00975 dihydroxy-acid dehydratase 0.58 32
Pantoea sp. MT58 0.84 IAI47_01895 3-dehydroquinate synthase 0.89 IAI47_01035 dihydroxy-acid dehydratase — —
Rahnella sp. WP5 0.84 EX31_RS04720 3-dehydroquinate synthase 0.87 EX31_RS15005 dihydroxy-acid dehydratase — —
Erwinia tracheiphila SCR3 0.82 LU632_RS22865 aroB 3-dehydroquinate synthase 0.86 LU632_RS24400 ilvD dihydroxy-acid dehydratase low > 74
Serratia liquefaciens MT49 0.81 IAI46_23700 3-dehydroquinate synthase 0.90 IAI46_24345 dihydroxy-acid dehydratase 0.84 1
Dickeya dadantii 3937 0.81 DDA3937_RS19545 3-dehydroquinate synthase 0.92 DDA3937_RS20155 dihydroxy-acid dehydratase — —
Dickeya dianthicola ME23 0.80 DZA65_RS20760 3-dehydroquinate synthase 0.91 DZA65_RS21335 dihydroxy-acid dehydratase — —
Dickeya dianthicola 67-19 0.80 HGI48_RS19675 3-dehydroquinate synthase 0.91 HGI48_RS20295 dihydroxy-acid dehydratase — —
Pectobacterium carotovorum WPP14 0.79 HER17_RS01780 3-dehydroquinate synthase 0.91 HER17_RS01075 dihydroxy-acid dehydratase 0.88 21
Vibrio cholerae E7946 ATCC 55056 0.63 CSW01_13300 3-dehydroquinate synthase 0.85 CSW01_00140 dihydroxy-acid dehydratase low > 62
Shewanella amazonensis SB2B 0.62 Sama_3367 3-dehydroquinate synthase (RefSeq) 0.79 Sama_3279 dihydroxy-acid dehydratase (RefSeq) 0.63 28
Shewanella oneidensis MR-1 0.61 SO0287 aroB 3-dehydroquinate synthase (NCBI ptt file) 0.80 SO4345 ilvD dihydroxy-acid dehydratase (NCBI ptt file) 0.85 37
Shewanella sp. ANA-3 0.61 Shewana3_3893 aroB 3-dehydroquinate synthase (RefSeq) 0.80 Shewana3_0358 dihydroxy-acid dehydratase (RefSeq) 0.92 14
Shewanella loihica PV-4 0.60 Shew_0214 3-dehydroquinate synthase (RefSeq) 0.78 Shew_0292 dihydroxy-acid dehydratase (RefSeq) 0.76 18
Alteromonas macleodii MIT1002 0.60 MIT1002_00447 3-dehydroquinate synthase 0.79 MIT1002_04041 Dihydroxy-acid dehydratase — —
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_1537 3-dehydroquinate synthase (EC 4.2.3.4) 0.75 Pf1N1B4_2303 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Pseudomonas putida KT2440 0.55 PP_5078 3-dehydroquinate synthase 0.74 PP_5128 Dihydroxy-acid dehydratase — —
Pseudomonas simiae WCS417 0.55 PS417_01985 3-dehydroquinate synthase 0.75 PS417_26890 dihydroxy-acid dehydratase — —
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS02030 3-dehydroquinate synthase 0.75 PFLU_RS28535 dihydroxy-acid dehydratase — —
Pseudomonas fluorescens SBW25 0.55 PFLU_RS02030 3-dehydroquinate synthase 0.75 PFLU_RS28535 dihydroxy-acid dehydratase — —
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_275 3-dehydroquinate synthase (EC 4.2.3.4) 0.75 PfGW456L13_973 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.61 45
Pseudomonas fluorescens FW300-N2E2 0.55 Pf6N2E2_3754 3-dehydroquinate synthase (EC 4.2.3.4) 0.75 Pf6N2E2_4564 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Pseudomonas fluorescens FW300-N2C3 0.55 AO356_09385 3-dehydroquinate synthase 0.75 AO356_13250 dihydroxy-acid dehydratase — —
Pseudomonas fluorescens FW300-N2E3 0.54 AO353_12505 3-dehydroquinate synthase 0.75 AO353_08345 dihydroxy-acid dehydratase — —
Pseudomonas sp. RS175 0.54 PFR28_05013 3-dehydroquinate synthase 0.75 PFR28_04278 Dihydroxy-acid dehydratase — —
Pseudomonas syringae pv. syringae B728a 0.54 Psyr_0409 3-dehydroquinate synthase 0.74 Psyr_0469 dihydroxyacid dehydratase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.54 Psyr_0409 3-dehydroquinate synthase 0.74 Psyr_0469 dihydroxyacid dehydratase — —
Pseudomonas sp. S08-1 0.54 OH686_10015 3-dehydroquinate synthase 0.75 OH686_14100 dihydroxy-acid dehydratase — —
Dechlorosoma suillum PS 0.53 Dsui_1095 3-dehydroquinate synthase 0.74 Dsui_1122 dihydroxy-acid dehydratase — —
Pseudomonas stutzeri RCH2 0.53 Psest_3713 3-dehydroquinate synthase 0.75 Psest_0234 dihydroxy-acid dehydratase — —
Marinobacter adhaerens HP15 0.53 HP15_480 3-dehydroquinate synthase 0.70 HP15_595 dihydroxy-acid dehydratase — —
Variovorax sp. OAS795 0.53 ABID97_RS23255 3-dehydroquinate synthase 0.31 ABID97_RS17500 dihydroxy-acid dehydratase — —
Burkholderia phytofirmans PsJN 0.52 BPHYT_RS17885 3-dehydroquinate synthase 0.74 BPHYT_RS10100 dihydroxy-acid dehydratase 0.74 60
Paraburkholderia graminis OAS925 0.52 ABIE53_003740 3-dehydroquinate synthase 0.74 ABIE53_006513 dihydroxy-acid dehydratase — —
Cupriavidus basilensis FW507-4G11 0.52 RR42_RS19005 3-dehydroquinate synthase 0.29 RR42_RS16210 dihydroxy-acid dehydratase — —
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS28035 3-dehydroquinate synthase 0.74 QEN71_RS21095 dihydroxy-acid dehydratase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.51 H281DRAFT_05615 3-dehydroquinate synthase 0.74 H281DRAFT_05312 dihydroxyacid dehydratase — —
Ralstonia solanacearum GMI1000 0.51 RS_RS14880 3-dehydroquinate synthase 0.28 RS_RS12105 dihydroxy-acid dehydratase — —
Ralstonia solanacearum PSI07 0.50 RPSI07_RS10300 3-dehydroquinate synthase 0.29 RPSI07_RS12840 dihydroxy-acid dehydratase — —
Ralstonia sp. UNC404CL21Col 0.50 ABZR87_RS02590 3-dehydroquinate synthase 0.75 ABZR87_RS00240 dihydroxy-acid dehydratase low > 80
Ralstonia solanacearum UW163 0.50 UW163_RS06680 3-dehydroquinate synthase 0.29 UW163_RS09135 dihydroxy-acid dehydratase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.50 GFF1331 3-dehydroquinate synthase (EC 4.2.3.4) 0.64 GFF2073 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 90
Ralstonia solanacearum IBSBF1503 0.50 RALBFv3_RS06935 3-dehydroquinate synthase 0.29 RALBFv3_RS04535 dihydroxy-acid dehydratase — —
Acinetobacter radioresistens SK82 0.50 MPMX26_02810 3-dehydroquinate synthase 0.29 MPMX26_03019 Dihydroxy-acid dehydratase — —
Acidovorax sp. GW101-3H11 0.50 Ac3H11_4705 3-dehydroquinate synthase (EC 4.2.3.4) 0.74 Ac3H11_955 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.72 31
Variovorax sp. SCN45 0.49 GFF5325 3-dehydroquinate synthase (EC 4.2.3.4) 0.31 GFF471 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Castellaniella sp019104865 MT123 0.46 ABCV34_RS12705 3-dehydroquinate synthase 0.72 ABCV34_RS14810 dihydroxy-acid dehydratase — —
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_11185 aroB 3-dehydroquinate synthase 0.27 OKGIIK_13600 ilvD dihydroxy-acid dehydratase — —
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS10480 3-dehydroquinate synthase 0.28 ABZR86_RS15945 dihydroxy-acid dehydratase 0.79 53
Rhodospirillum rubrum S1H 0.41 Rru_A3741 3-dehydroquinate synthase (NCBI) 0.71 Rru_A1786 Dihydroxy-acid dehydratase (NCBI) — —
Caulobacter crescentus NA1000 Δfur 0.41 CCNA_03104 3-dehydroquinate synthase 0.72 CCNA_03139 dihydroxy-acid dehydratase low > 67
Caulobacter crescentus NA1000 0.41 CCNA_03104 3-dehydroquinate synthase 0.72 CCNA_03139 dihydroxy-acid dehydratase 0.89 15
Xanthomonas campestris pv. campestris strain 8004 0.41 Xcc-8004.1615.1 3-dehydroquinate synthase (EC 4.2.3.4) 0.72 Xcc-8004.451.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.46 73
Lysobacter sp. OAE881 0.41 ABIE51_RS16100 3-dehydroquinate synthase 0.27 ABIE51_RS17540 dihydroxy-acid dehydratase — —
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS04310 3-dehydroquinate synthase 0.26 LRK54_RS10320 dihydroxy-acid dehydratase — —
Rhodanobacter denitrificans MT42 0.41 LRK55_RS04085 3-dehydroquinate synthase 0.26 LRK55_RS09960 dihydroxy-acid dehydratase — —
Synechococcus elongatus PCC 7942 0.40 Synpcc7942_0525 aroB 3-dehydroquinate synthase 0.75 Synpcc7942_0626 ilvD dihydroxy-acid dehydratase — —
Magnetospirillum magneticum AMB-1 0.40 AMB_RS19865 3-dehydroquinate synthase 0.73 AMB_RS12770 dihydroxy-acid dehydratase — —
Rhizobium sp. OAE497 0.38 ABIE40_RS17670 3-dehydroquinate synthase 0.75 ABIE40_RS08005 dihydroxy-acid dehydratase — —
Agrobacterium fabrum C58 0.38 Atu3625 3-dehydroquinate synthase 0.73 Atu1918 dihydroxy-acid dehydratase — —
Phaeobacter inhibens DSM 17395 0.38 PGA1_c14100 3-dehydroquinate synthase AroB 0.70 PGA1_c29490 dihydroxy-acid dehydratase LivD — —
Azospirillum brasilense Sp245 0.38 AZOBR_RS03220 3-dehydroquinate synthase 0.74 AZOBR_RS15015 dihydroxy-acid dehydratase — —
Sinorhizobium meliloti 1021 0.38 SMc00696 3-dehydroquinate synthase 0.75 SMc04045 dihydroxy-acid dehydratase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.38 A4249_RS04175 3-dehydroquinate synthase 0.25 A4249_RS10030 dihydroxy-acid dehydratase — —
Azospirillum sp. SherDot2 0.37 MPMX19_02639 3-dehydroquinate synthase 0.74 MPMX19_05356 Dihydroxy-acid dehydratase — —
Rhodopseudomonas palustris CGA009 0.37 TX73_002610 3-dehydroquinate synthase 0.74 TX73_007515 dihydroxy-acid dehydratase — —
Sphingomonas koreensis DSMZ 15582 0.36 Ga0059261_3591 3-dehydroquinate synthase (EC 4.2.3.4) 0.28 Ga0059261_4216 Dihydroxyacid dehydratase/phosphogluconate dehydratase — —
Dinoroseobacter shibae DFL-12 0.36 Dshi_1608 3-dehydroquinate synthase (RefSeq) 0.31 Dshi_0129 dihydroxy-acid dehydratase (RefSeq) — —
Mycobacterium tuberculosis H37Rv 0.29 Rv2538c 3-dehydroquinate synthase AroB 0.31 Rv0189c Probable dihydroxy-acid dehydratase IlvD (dad) — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.25 ABZR88_RS05215 3-dehydroquinate synthase 0.27 ABZR88_RS11575 dihydroxy-acid dehydratase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.22 CA264_13105 3-dehydroquinate synthase 0.28 CA264_06935 dihydroxy-acid dehydratase — —
Bacteroides stercoris CC31F 0.21 HMPREF1181_RS09265 3-dehydroquinate synthase 0.64 HMPREF1181_RS08335 dihydroxy-acid dehydratase 0.76 39
Bacteroides ovatus ATCC 8483 0.21 BACOVA_04629 3-dehydroquinate synthase 0.62 BACOVA_03302 dihydroxy-acid dehydratase — —

Not shown: 1 genomes with orthologs for b3389 only; 13 genomes with orthologs for b3771 only