Conservation of cofitness between b1114 and b2616 in Escherichia coli BW25113

84 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b1114 mfd transcription-repair coupling factor (NCBI) 1.0 b2616 recN recombination and repair protein (NCBI) 0.32 18
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02552 Transcription-repair-coupling factor 1.00 OHPLBJKB_01091 DNA repair protein RecN low > 73
Escherichia coli ECRC62 1.00 BNILDI_19160 mfd transcription-repair coupling factor 1.00 BNILDI_11620 recN DNA repair protein RecN — —
Escherichia coli ECOR27 1.00 NOLOHH_20995 mfd transcription-repair coupling factor 1.00 NOLOHH_12815 recN DNA repair protein RecN low > 57
Escherichia coli ECRC99 1.00 KEDOAH_24285 mfd transcription-repair coupling factor 0.99 KEDOAH_07075 recN DNA repair protein RecN — —
Escherichia coli ECRC98 1.00 JDDGAC_07130 mfd transcription-repair coupling factor 0.99 JDDGAC_24810 recN DNA repair protein RecN — —
Escherichia coli ECRC101 1.00 MCAODC_22830 mfd transcription-repair coupling factor 0.99 MCAODC_11670 recN DNA repair protein RecN — —
Escherichia coli ECRC102 1.00 NIAGMN_24360 mfd transcription-repair coupling factor 0.99 NIAGMN_18915 recN DNA repair protein RecN — —
Escherichia coli ECRC101 1.00 OKFHMN_03470 mfd transcription-repair coupling factor 0.99 OKFHMN_21145 recN DNA repair protein RecN — —
Escherichia fergusonii Becca 1.00 EFB2_02861 Transcription-repair-coupling factor 0.99 EFB2_01277 DNA repair protein RecN low > 86
Escherichia coli ECOR38 1.00 HEPCGN_24015 mfd transcription-repair coupling factor 0.99 HEPCGN_20265 recN DNA repair protein RecN low > 85
Escherichia coli BL21 1.00 ECD_01110 transcription-repair coupling factor 1.00 ECD_02504 recombination and repair protein low > 60
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.96 GFF3397 Transcription-repair coupling factor 0.92 GFF4162 DNA repair protein RecN low > 78
Klebsiella michiganensis M5al 0.93 BWI76_RS11205 transcription-repair coupling factor 0.84 BWI76_RS21560 DNA repair protein RecN low > 92
Enterobacter asburiae PDN3 0.93 EX28DRAFT_1816 transcription-repair coupling factor (mfd) 0.86 EX28DRAFT_2719 DNA repair protein RecN low > 76
Enterobacter sp. TBS_079 0.92 MPMX20_01795 Transcription-repair-coupling factor 0.85 MPMX20_03486 DNA repair protein RecN low > 85
Pectobacterium carotovorum WPP14 0.84 HER17_RS08775 transcription-repair coupling factor 0.72 HER17_RS17420 DNA repair protein RecN low > 75
Erwinia tracheiphila SCR3 0.84 LU632_RS14730 mfd transcription-repair coupling factor 0.73 LU632_RS16985 recN DNA repair protein RecN low > 74
Pantoea sp. MT58 0.83 IAI47_11975 transcription-repair coupling factor 0.77 IAI47_04810 DNA repair protein RecN low > 76
Serratia liquefaciens MT49 0.83 IAI46_10320 transcription-repair coupling factor 0.77 IAI46_19635 DNA repair protein RecN low > 86
Dickeya dadantii 3937 0.82 DDA3937_RS13000 transcription-repair coupling factor 0.73 DDA3937_RS04325 DNA repair protein RecN low > 74
Rahnella sp. WP5 0.82 EX31_RS24520 transcription-repair coupling factor 0.75 EX31_RS21760 DNA repair protein RecN low > 89
Dickeya dianthicola 67-19 0.82 HGI48_RS13065 transcription-repair coupling factor 0.72 HGI48_RS04320 DNA repair protein RecN low > 71
Dickeya dianthicola ME23 0.81 DZA65_RS13530 transcription-repair coupling factor 0.72 DZA65_RS04235 DNA repair protein RecN low > 75
Vibrio cholerae E7946 ATCC 55056 0.65 CSW01_09445 transcription-repair coupling factor 0.53 CSW01_04395 DNA repair protein RecN low > 62
Alteromonas macleodii MIT1002 0.58 MIT1002_01646 Transcription-repair-coupling factor 0.43 MIT1002_01443 Recombination protein N low > 70
Shewanella oneidensis MR-1 0.56 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) 0.55 SO3462 recN DNA repair protein RecN (NCBI ptt file) 0.23 62
Shewanella loihica PV-4 0.56 Shew_1630 transcription-repair coupling factor (RefSeq) 0.53 Shew_1196 recombination and repair protein (RefSeq) 0.42 25
Shewanella sp. ANA-3 0.56 Shewana3_2289 transcription-repair coupling factor (RefSeq) 0.55 Shewana3_1104 recombination and repair protein (RefSeq) low > 73
Shewanella amazonensis SB2B 0.55 Sama_1330 transcription-repair coupling factor (RefSeq) 0.54 Sama_1026 recombination and repair protein (RefSeq) 0.58 5
Pseudomonas stutzeri RCH2 0.55 Psest_1653 transcription-repair coupling factor (mfd) 0.38 Psest_0962 DNA repair protein RecN 0.56 6
Pseudomonas sp. S08-1 0.54 OH686_21990 transcription-repair coupling factor 0.39 OH686_17050 DNA repair protein RecN low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.54 Psyr_1896 transcription-repair coupling factor 0.38 Psyr_4197 DNA replication and repair protein RecN 0.53 1
Pseudomonas syringae pv. syringae B728a 0.54 Psyr_1896 transcription-repair coupling factor 0.38 Psyr_4197 DNA replication and repair protein RecN low > 86
Pseudomonas fluorescens FW300-N2E3 0.54 AO353_00435 transcription-repair coupling factor 0.38 AO353_05660 DNA repair protein RecN low > 101
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_4027 Transcription-repair coupling factor 0.40 PfGW456L13_5106 DNA repair protein RecN low > 87
Pseudomonas fluorescens FW300-N1B4 0.53 Pf1N1B4_3916 Transcription-repair coupling factor 0.39 Pf1N1B4_1178 DNA repair protein RecN low > 87
Pseudomonas fluorescens FW300-N2E2 0.53 Pf6N2E2_2278 Transcription-repair coupling factor 0.39 Pf6N2E2_3370 DNA repair protein RecN low > 103
Pseudomonas fluorescens FW300-N2C3 0.53 AO356_02270 transcription-repair coupling factor 0.38 AO356_07510 DNA repair protein RecN 0.45 55
Pseudomonas simiae WCS417 0.53 PS417_07635 transcription-repair coupling factor 0.39 PS417_24070 recombination and repair protein 0.31 11
Pseudomonas fluorescens SBW25 0.53 PFLU_RS07710 transcription-repair coupling factor 0.38 PFLU_RS25910 DNA repair protein RecN low > 109
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS07710 transcription-repair coupling factor 0.38 PFLU_RS25910 DNA repair protein RecN low > 109
Pseudomonas sp. RS175 0.53 PFR28_01123 Transcription-repair-coupling factor 0.39 PFR28_00071 DNA repair protein RecN low > 88
Pseudomonas putida KT2440 0.53 PP_2148 transcription-repair coupling factor 0.37 PP_4729 factor used in recombination and DNA repair low > 96
Marinobacter adhaerens HP15 0.52 HP15_2257 transcription-repair-coupling factor 0.40 HP15_3084 DNA repair protein RecN 0.81 6
Kangiella aquimarina DSM 16071 0.51 B158DRAFT_1800 transcription-repair coupling factor 0.37 B158DRAFT_0601 DNA replication and repair protein RecN low > 40
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS21210 transcription-repair coupling factor 0.34 ABZR86_RS05665 DNA repair protein RecN 0.38 21
Rhodanobacter denitrificans MT42 0.50 LRK55_RS01815 transcription-repair coupling factor 0.33 LRK55_RS17815 DNA repair protein RecN low > 63
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS02040 transcription-repair coupling factor 0.33 LRK54_RS17960 DNA repair protein RecN low > 59
Lysobacter sp. OAE881 0.50 ABIE51_RS14320 transcription-repair coupling factor 0.31 ABIE51_RS11655 DNA repair protein RecN low > 62
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_09105 mfd transcription-repair coupling factor 0.33 OKGIIK_07340 recN DNA repair protein RecN low > 52
Xanthomonas campestris pv. campestris strain 8004 0.48 Xcc-8004.1775.1 Transcription-repair coupling factor 0.30 Xcc-8004.3431.1 DNA repair protein RecN low > 74
Acinetobacter radioresistens SK82 0.47 MPMX26_01319 Transcription-repair-coupling factor 0.29 MPMX26_00239 DNA repair protein RecN low > 36
Paraburkholderia graminis OAS925 0.46 ABIE53_002095 transcription-repair coupling factor (superfamily II helicase) 0.35 ABIE53_000856 DNA repair protein RecN (Recombination protein N) low > 113
Paraburkholderia sabiae LMG 24235 0.46 QEN71_RS22060 transcription-repair coupling factor 0.37 QEN71_RS26535 DNA repair protein RecN low > 153
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS13240 transcription-repair coupling factor 0.36 ABZR87_RS01065 DNA repair protein RecN low > 80
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_00880 transcription-repair coupling factor 0.35 H281DRAFT_04692 DNA replication and repair protein RecN low > 103
Ralstonia solanacearum GMI1000 0.46 RS_RS08275 transcription-repair coupling factor 0.35 RS_RS13275 DNA repair protein RecN low > 80
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS15180 transcription-repair coupling factor 0.38 HSERO_RS03060 DNA repair protein low > 78
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS09290 helicase 0.35 BPHYT_RS03560 DNA repair protein low > 109
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS01445 transcription-repair coupling factor 0.36 RALBFv3_RS05415 DNA repair protein RecN low > 76
Ralstonia solanacearum UW163 0.46 UW163_RS14755 transcription-repair coupling factor 0.36 UW163_RS08210 DNA repair protein RecN — —
Variovorax sp. SCN45 0.46 GFF412 Transcription-repair coupling factor 0.32 GFF2357 DNA repair protein RecN low > 127
Ralstonia solanacearum PSI07 0.45 RPSI07_RS16040 transcription-repair coupling factor 0.36 RPSI07_RS11890 DNA repair protein RecN low > 81
Acidovorax sp. GW101-3H11 0.45 Ac3H11_328 Transcription-repair coupling factor 0.32 Ac3H11_3460 DNA repair protein RecN low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.45 GFF4934 Transcription-repair coupling factor 0.32 GFF829 DNA repair protein RecN 0.59 85
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS07845 transcription-repair coupling factor 0.35 RR42_RS05910 DNA repair protein 0.53 2
Dechlorosoma suillum PS 0.44 Dsui_2385 transcription-repair coupling factor Mfd 0.33 Dsui_3072 DNA repair protein RecN 0.89 6
Castellaniella sp019104865 MT123 0.43 ABCV34_RS08660 transcription-repair coupling factor 0.33 ABCV34_RS07470 DNA repair protein RecN low > 48
Magnetospirillum magneticum AMB-1 0.33 AMB_RS12390 transcription-repair coupling factor 0.27 AMB_RS19520 DNA repair protein RecN — —
Rhodopseudomonas palustris CGA009 0.33 TX73_013805 transcription-repair coupling factor 0.24 TX73_018240 DNA repair protein RecN low > 86
Azospirillum sp. SherDot2 0.32 MPMX19_00876 Transcription-repair-coupling factor 0.24 MPMX19_01601 DNA repair protein RecN low > 112
Brevundimonas sp. GW460-12-10-14-LB2 0.32 A4249_RS04775 transcription-repair coupling factor 0.22 A4249_RS02620 DNA repair protein RecN low > 48
Bosea sp. OAE506 0.32 ABIE41_RS15825 transcription-repair coupling factor 0.24 ABIE41_RS12645 DNA repair protein RecN low > 77
Rhodospirillum rubrum S1H 0.32 Rru_A1726 Transcription-repair coupling factor (NCBI) 0.24 Rru_A0940 DNA repair protein RecN (NCBI) — —
Sinorhizobium meliloti 1021 0.32 SMc04450 transcription-repair coupling factor 0.27 SMc01877 DNA repair protein low > 103
Sphingomonas koreensis DSMZ 15582 0.32 Ga0059261_0960 transcription-repair coupling factor (mfd) 0.25 Ga0059261_1026 DNA repair protein RecN low > 68
Caulobacter crescentus NA1000 0.32 CCNA_01920 transcription-repair coupling factor Mfd 0.21 CCNA_02062 DNA repair protein recN 0.53 12
Caulobacter crescentus NA1000 Δfur 0.32 CCNA_01920 transcription-repair coupling factor Mfd 0.21 CCNA_02062 DNA repair protein recN low > 67
Phaeobacter inhibens DSM 17395 0.32 PGA1_c14920 transcription-repair-coupling factor Mfd 0.24 PGA1_c09720 DNA repair protein RecN low > 62
Dinoroseobacter shibae DFL-12 0.32 Dshi_1561 transcription-repair coupling factor (RefSeq) 0.24 Dshi_2413 DNA repair protein RecN (RefSeq) low > 64
Agrobacterium fabrum C58 0.31 Atu1778 transcription-repair coupling factor 0.26 Atu2083 DNA repair protein RecN low > 89
Bifidobacterium breve UCC2003 0.27 BBR_RS14115 transcription-repair coupling factor 0.15 BBR_RS14030 DNA repair protein RecN low > 34
Desulfovibrio vulgaris Hildenborough JW710 0.26 DVU1903 mfd transcription-repair coupling factor (TIGR) 0.17 DVU2463 recN DNA repair protein RecN (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.26 DvMF_0285 transcription-repair coupling factor (RefSeq) 0.09 DvMF_0923 SMC domain protein (RefSeq) low > 51

Not shown: 2 genomes with orthologs for b1114 only; 15 genomes with orthologs for b2616 only