Conservation of cofitness between b3822 and b3813 in Escherichia coli BW25113

87 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3822 recQ ATP-dependent DNA helicase (NCBI) 1.0 b3813 uvrD DNA-dependent ATPase I and helicase II (NCBI) 0.33 8
Escherichia coli Nissle 1917 1.00 ECOLIN_RS21935 ATP-dependent DNA helicase RecQ 1.00 ECOLIN_RS21885 DNA helicase II low > 52
Escherichia fergusonii Becca 1.00 EFB2_04815 ATP-dependent DNA helicase RecQ 1.00 EFB2_04824 DNA helicase II low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_04229 ATP-dependent DNA helicase RecQ 1.00 OHPLBJKB_04237 DNA helicase II 0.65 16
Escherichia coli ECRC62 1.00 BNILDI_05040 recQ ATP-dependent DNA helicase RecQ 1.00 BNILDI_04995 uvrD DNA helicase II — —
Escherichia coli ECOR27 1.00 NOLOHH_06490 recQ ATP-dependent DNA helicase RecQ 1.00 NOLOHH_06540 uvrD DNA helicase II low > 57
Escherichia coli ECRC102 1.00 NIAGMN_12115 recQ ATP-dependent DNA helicase RecQ 1.00 NIAGMN_12165 uvrD DNA helicase II — —
Escherichia coli ECRC101 1.00 OKFHMN_14360 recQ ATP-dependent DNA helicase RecQ 1.00 OKFHMN_14410 uvrD DNA helicase II — —
Escherichia coli ECOR38 1.00 HEPCGN_13060 recQ ATP-dependent DNA helicase RecQ 1.00 HEPCGN_13115 uvrD DNA helicase II low > 85
Escherichia coli ECRC99 1.00 KEDOAH_13790 recQ ATP-dependent DNA helicase RecQ 1.00 KEDOAH_13740 uvrD DNA helicase II — —
Escherichia coli ECRC98 1.00 JDDGAC_17985 recQ ATP-dependent DNA helicase RecQ 1.00 JDDGAC_18035 uvrD DNA helicase II — —
Escherichia coli ECRC101 1.00 MCAODC_04865 recQ ATP-dependent DNA helicase RecQ 1.00 MCAODC_04915 uvrD DNA helicase II — —
Escherichia coli BL21 1.00 ECD_03701 ATP-dependent DNA helicase 1.00 ECD_03689 DNA-dependent ATPase I and helicase II — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF248 ATP-dependent DNA helicase RecQ 0.99 GFF241 ATP-dependent DNA helicase UvrD/PcrA 0.69 1
Enterobacter sp. TBS_079 0.93 MPMX20_04458 ATP-dependent DNA helicase RecQ 0.97 MPMX20_04463 DNA helicase II low > 85
Enterobacter asburiae PDN3 0.92 EX28DRAFT_4487 ATP-dependent DNA helicase RecQ 0.97 EX28DRAFT_4482 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) low > 76
Klebsiella michiganensis M5al 0.92 BWI76_RS01245 DNA helicase RecQ 0.98 BWI76_RS01220 DNA-dependent helicase II low > 92
Pectobacterium carotovorum WPP14 0.82 HER17_RS01395 ATP-dependent DNA helicase RecQ 0.91 HER17_RS01360 DNA helicase II low > 75
Erwinia tracheiphila SCR3 0.82 LU632_RS24095 recQ ATP-dependent DNA helicase RecQ 0.90 LU632_RS24125 uvrD DNA helicase II — —
Pantoea sp. MT58 0.82 IAI47_18360 ATP-dependent DNA helicase RecQ 0.89 IAI47_18390 DNA helicase II low > 76
Rahnella sp. WP5 0.81 EX31_RS15210 ATP-dependent DNA helicase RecQ 0.87 EX31_RS15175 DNA helicase II low > 89
Serratia liquefaciens MT49 0.81 IAI46_00770 ATP-dependent DNA helicase RecQ 0.89 IAI46_00735 DNA helicase II 0.71 9
Dickeya dianthicola ME23 0.80 DZA65_RS21045 ATP-dependent DNA helicase RecQ 0.89 DZA65_RS21080 DNA helicase II low > 75
Dickeya dianthicola 67-19 0.80 HGI48_RS20005 ATP-dependent DNA helicase RecQ 0.89 HGI48_RS20035 DNA helicase II low > 71
Dickeya dadantii 3937 0.80 DDA3937_RS19850 ATP-dependent DNA helicase RecQ 0.89 DDA3937_RS19880 DNA helicase II low > 74
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_01045 DNA helicase RecQ 0.71 CSW01_01015 DNA helicase II low > 62
Shewanella oneidensis MR-1 0.58 SO4241 recQ ATP-dependent DNA helicase RecQ (NCBI ptt file) 0.72 SO0467 uvrD DNA helicase II (NCBI ptt file) 0.51 10
Shewanella sp. ANA-3 0.58 Shewana3_3763 ATP-dependent DNA helicase RecQ (RefSeq) 0.72 Shewana3_0469 uvrD DNA-dependent helicase II (RefSeq) low > 73
Shewanella amazonensis SB2B 0.58 Sama_0333 ATP-dependent DNA helicase RecQ (RefSeq) 0.71 Sama_0419 uvrD DNA-dependent helicase II (RefSeq) 0.33 53
Shewanella loihica PV-4 0.57 Shew_3474 ATP-dependent DNA helicase RecQ (RefSeq) 0.72 Shew_3385 uvrD DNA-dependent helicase II (RefSeq) 0.53 24
Alteromonas macleodii MIT1002 0.53 MIT1002_00148 ATP-dependent DNA helicase RecQ 0.67 MIT1002_00153 DNA helicase II low > 70
Pontibacter actiniarum KMM 6156, DSM 19842 0.45 CA264_07560 DNA helicase RecQ 0.32 CA264_07795 ATP-dependent DNA helicase — —
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_4423 ATP-dependent DNA helicase RecQ 0.62 PfGW456L13_724 ATP-dependent DNA helicase UvrD/PcrA 0.37 13
Pseudomonas putida KT2440 0.45 PP_4516 ATP-dependent DNA 3 0.62 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex 0.23 1
Pseudomonas sp. RS175 0.45 PFR28_00788 ATP-dependent DNA helicase RecQ 0.62 PFR28_04523 DNA helicase II low > 88
Herbaspirillum seropedicae SmR1 0.45 HSERO_RS02465 ATP-dependent DNA helicase RecQ 0.43 HSERO_RS02160 DNA-dependent helicase low > 78
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_04050 ATP-dependent DNA helicase RecQ 0.62 AO356_11990 DNA helicase II low > 104
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_2645 ATP-dependent DNA helicase RecQ 0.62 Pf6N2E2_4273 ATP-dependent DNA helicase UvrD/PcrA low > 103
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_3533 ATP-dependent DNA helicase RecQ 0.61 Pf1N1B4_2005 ATP-dependent DNA helicase UvrD/PcrA low > 87
Pseudomonas fluorescens SBW25 0.45 PFLU_RS21920 DNA helicase RecQ 0.62 PFLU_RS29900 DNA helicase II low > 109
Pseudomonas fluorescens SBW25-INTG 0.45 PFLU_RS21920 DNA helicase RecQ 0.62 PFLU_RS29900 DNA helicase II low > 109
Phocaeicola vulgatus CL09T03C04 0.44 HMPREF1058_RS14585 DNA helicase RecQ 0.31 HMPREF1058_RS03305 UvrD-helicase domain-containing protein low > 67
Mucilaginibacter yixingensis YX-36 DSM 26809 0.44 ABZR88_RS20865 DNA helicase RecQ 0.31 ABZR88_RS07840 ATP-dependent helicase — —
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS13000 DNA helicase RecQ 0.59 LRK54_RS06850 DNA helicase II low > 59
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_18430 ATP-dependent DNA helicase RecQ 0.62 AO353_10055 DNA helicase II low > 101
Dechlorosoma suillum PS 0.44 Dsui_3092 ATP-dependent DNA helicase RecQ 0.45 Dsui_1227 DNA/RNA helicase, superfamily I low > 51
Pseudomonas stutzeri RCH2 0.44 Psest_1869 ATP-dependent DNA helicase RecQ 0.61 Psest_4098 Superfamily I DNA and RNA helicases 0.25 21
Phocaeicola dorei CL03T12C01 0.44 ABI39_RS10235 DNA helicase RecQ 0.31 ABI39_RS17735 UvrD-helicase domain-containing protein — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.61 Psyr_5065 ATP-dependent DNA helicase UvrD low > 86
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS19925 DNA helicase RecQ 0.59 ABZR86_RS16965 DNA helicase II low > 74
Rhodanobacter denitrificans MT42 0.44 LRK55_RS12700 DNA helicase RecQ 0.59 LRK55_RS06595 DNA helicase II — —
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_3738 ATP-dependent DNA helicase RecQ 0.61 Psyr_5065 ATP-dependent DNA helicase UvrD low > 86
Marinobacter adhaerens HP15 0.44 HP15_1718 ATP-dependent DNA helicase RecQ 0.59 HP15_3403 UvrD/REP helicase low > 73
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_02375 recQ DNA helicase RecQ 0.60 OKGIIK_16775 DNA helicase low > 52
Pseudomonas sp. S08-1 0.43 OH686_20670 ATP-dependent DNA helicase RecQ 0.60 OH686_13045 ATP-dependent DNA helicase UvrD/PcrA low > 80
Echinicola vietnamensis KMM 6221, DSM 17526 0.43 Echvi_0784 ATP-dependent DNA helicase RecQ 0.34 Echvi_0292 Superfamily I DNA and RNA helicases — —
Variovorax sp. OAS795 0.43 ABID97_RS03395 DNA helicase RecQ 0.42 ABID97_RS09150 UvrD-helicase domain-containing protein low > 91
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS19310 ATP-dependent DNA helicase RecQ 0.42 RR42_RS15090 DNA helicase 0.35 68
Azospirillum brasilense Sp245 0.42 AZOBR_RS02840 ATP-dependent DNA helicase RecQ 0.36 AZOBR_RS12445 DNA helicase II 0.43 51
Magnetospirillum magneticum AMB-1 0.42 AMB_RS21505 DNA helicase RecQ 0.35 AMB_RS03725 DNA helicase II low > 64
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1476.1 ATP-dependent DNA helicase RecQ 0.57 Xcc-8004.5114.1 ATP-dependent DNA helicase UvrD/PcrA low > 74
Bacteroides stercoris CC31F 0.42 HMPREF1181_RS14110 DNA helicase RecQ 0.31 HMPREF1181_RS16505 UvrD-helicase domain-containing protein low > 56
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS18145 ATP-dependent DNA helicase RecQ 0.44 BPHYT_RS13840 DNA-dependent helicase — —
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS02880 DNA helicase RecQ 0.42 ABZR87_RS15705 UvrD-helicase domain-containing protein low > 80
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS28295 DNA helicase RecQ 0.43 QEN71_RS05110 3'-5' exonuclease — —
Phaeobacter inhibens DSM 17395 0.42 PGA1_c31900 ATP-dependent DNA helicase RecQ 0.35 PGA1_c09450 DNA helicase II UvrD low > 62
Paraburkholderia graminis OAS925 0.42 ABIE53_003792 ATP-dependent DNA helicase RecQ 0.44 ABIE53_002936 DNA helicase-2/ATP-dependent DNA helicase PcrA — —
Azospirillum sp. SherDot2 0.42 MPMX19_00123 ATP-dependent DNA helicase RecQ 0.36 MPMX19_01610 ATP-dependent DNA helicase PcrA low > 112
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS07220 DNA helicase RecQ 0.41 RALBFv3_RS03775 DNA-dependent helicase — —
Bacteroides thetaiotaomicron VPI-5482 0.41 BT1848 ATP-dependent DNA helicase recQ (NCBI ptt file) 0.31 BT0657 ATP-dependent DNA helicase (NCBI ptt file) — —
Ralstonia solanacearum UW163 0.41 UW163_RS06400 DNA helicase RecQ 0.41 UW163_RS09895 DNA-dependent helicase — —
Paraburkholderia bryophila 376MFSha3.1 0.41 H281DRAFT_06595 ATP-dependent DNA helicase RecQ 0.44 H281DRAFT_04469 ATP-dependent DNA helicase UvrD — —
Bacteroides ovatus ATCC 8483 0.41 BACOVA_04594 ATP-dependent DNA helicase RecQ 0.31 BACOVA_02365 UvrD/REP helicase — —
Dinoroseobacter shibae DFL-12 0.41 Dshi_3334 ATP-dependent DNA helicase RecQ (RefSeq) 0.35 Dshi_2483 UvrD/REP helicase (RefSeq) — —
Ralstonia solanacearum PSI07 0.41 RPSI07_RS10025 DNA helicase RecQ 0.41 RPSI07_RS13455 DNA-dependent helicase — —
Ralstonia solanacearum GMI1000 0.41 RS_RS15155 DNA helicase RecQ 0.42 RS_RS11220 DNA-dependent helicase low > 80
Castellaniella sp019104865 MT123 0.41 ABCV34_RS07985 DNA helicase RecQ 0.41 ABCV34_RS05210 UvrD-helicase domain-containing protein low > 48
Lysobacter sp. OAE881 0.41 ABIE51_RS05145 DNA helicase RecQ 0.59 ABIE51_RS01985 DNA helicase II low > 62
Acidovorax sp. GW101-3H11 0.41 Ac3H11_3308 ATP-dependent DNA helicase RecQ 0.42 Ac3H11_1660 ATP-dependent DNA helicase UvrD/PcrA low > 79
Parabacteroides merdae CL09T00C40 0.41 HMPREF1078_RS01195 DNA helicase RecQ 0.32 HMPREF1078_RS03560 3'-5' exonuclease low > 61
Hydrogenophaga sp. GW460-11-11-14-LB1 0.40 GFF1958 ATP-dependent DNA helicase RecQ 0.41 GFF5598 ATP-dependent DNA helicase UvrD/PcrA — —
Variovorax sp. SCN45 0.40 GFF6415 ATP-dependent DNA helicase RecQ 0.41 GFF4000 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) low > 127
Rhodospirillum rubrum S1H 0.40 Rru_A0089 ATP-dependent DNA helicase RecQ (NCBI) 0.34 Rru_A1536 UvrD/REP helicase (NCBI) 0.62 41
Bosea sp. OAE506 0.40 ABIE41_RS04160 DNA helicase RecQ 0.37 ABIE41_RS12730 UvrD-helicase domain-containing protein low > 77
Pedobacter sp. GW460-11-11-14-LB5 0.38 CA265_RS08905 DNA helicase RecQ 0.31 CA265_RS12980 ATP-dependent DNA helicase — —
Sphingomonas koreensis DSMZ 15582 0.37 Ga0059261_2261 ATP-dependent DNA helicase RecQ 0.35 Ga0059261_0249 Superfamily I DNA and RNA helicases 0.36 8
Brevundimonas sp. GW460-12-10-14-LB2 0.36 A4249_RS14575 DNA helicase RecQ 0.35 A4249_RS04960 UvrD-helicase domain-containing protein low > 48
Fusobacterium nucleatum SB010 0.34 HUW76_07235 DNA helicase RecQ 0.29 HUW76_07175 UvrD-helicase domain-containing protein low > 35

Not shown: 8 genomes with orthologs for b3822 only; 4 genomes with orthologs for b3813 only