Conservation of cofitness between b2947 and b3706 in Escherichia coli BW25113

87 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2947 gshB glutathione synthetase (NCBI) 1.0 b3706 trmE tRNA modification GTPase (NCBI) 0.33 20
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00771 Glutathione synthetase 1.00 OHPLBJKB_04346 tRNA modification GTPase MnmE — —
Escherichia coli BL21 1.00 ECD_02777 glutathione synthetase 1.00 ECD_03590 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase low > 60
Escherichia coli ECOR27 1.00 NOLOHH_11145 gshB glutathione synthase 1.00 NOLOHH_07125 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Escherichia coli ECRC62 1.00 BNILDI_09725 gshB glutathione synthase 1.00 BNILDI_04405 tRNA modification GTPase MnmE — —
Escherichia coli ECRC101 1.00 MCAODC_09795 gshB glutathione synthase 1.00 MCAODC_05495 tRNA modification GTPase MnmE — —
Escherichia coli ECRC98 1.00 JDDGAC_22905 gshB glutathione synthase 1.00 JDDGAC_18605 tRNA modification GTPase MnmE — —
Escherichia coli ECOR38 1.00 HEPCGN_18580 gshB glutathione synthase 1.00 HEPCGN_13680 tRNA modification GTPase MnmE low > 85
Escherichia coli ECRC99 1.00 KEDOAH_08865 gshB glutathione synthase 1.00 KEDOAH_13165 tRNA modification GTPase MnmE — —
Escherichia coli ECRC101 1.00 OKFHMN_19275 gshB glutathione synthase 1.00 OKFHMN_14985 tRNA modification GTPase MnmE — —
Escherichia coli ECRC102 1.00 NIAGMN_17040 gshB glutathione synthase 1.00 NIAGMN_12740 tRNA modification GTPase MnmE — —
Escherichia fergusonii Becca 0.97 EFB2_00955 Glutathione synthetase 1.00 EFB2_04925 tRNA modification GTPase MnmE low > 86
Escherichia coli Nissle 1917 0.97 ECOLIN_RS16395 glutathione synthase 1.00 ECOLIN_RS21345 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Klebsiella michiganensis M5al 0.91 BWI76_RS24075 glutathione synthase 0.96 BWI76_RS00050 tRNA modification GTPase — —
Enterobacter sp. TBS_079 0.91 MPMX20_03805 Glutathione synthetase 0.96 MPMX20_04650 tRNA modification GTPase MnmE low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF3049 Glutathione synthetase (EC 6.3.2.3) 0.96 GFF1750 GTPase and tRNA-U34 5-formylation enzyme TrmE low > 78
Enterobacter asburiae PDN3 0.91 EX28DRAFT_2985 glutathione synthase (EC 6.3.2.3) 0.95 EX28DRAFT_3993 tRNA modification GTPase TrmE — —
Erwinia tracheiphila SCR3 0.84 LU632_RS05480 gshB glutathione synthase 0.85 LU632_RS25300 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Serratia liquefaciens MT49 0.83 IAI46_21390 glutathione synthase 0.90 IAI46_25250 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 86
Pantoea sp. MT58 0.83 IAI47_03615 glutathione synthase 0.88 IAI47_18830 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 76
Rahnella sp. WP5 0.83 EX31_RS02665 glutathione synthase 0.90 EX31_RS06000 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 89
Dickeya dianthicola 67-19 0.82 HGI48_RS18495 glutathione synthase 0.90 HGI48_RS21710 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 71
Dickeya dadantii 3937 0.82 DDA3937_RS18560 glutathione synthase 0.89 DDA3937_RS21310 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 74
Pectobacterium carotovorum WPP14 0.82 HER17_RS02635 glutathione synthase 0.89 HER17_RS21825 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 75
Dickeya dianthicola ME23 0.82 DZA65_RS19630 glutathione synthase 0.90 DZA65_RS22695 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.36 59
Vibrio cholerae E7946 ATCC 55056 0.76 CSW01_02490 glutathione synthetase 0.77 CSW01_00015 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.90 1
Shewanella loihica PV-4 0.74 Shew_3225 glutathione synthetase (RefSeq) 0.76 Shew_3865 trmE tRNA modification GTPase TrmE (RefSeq) — —
Shewanella sp. ANA-3 0.73 Shewana3_3445 glutathione synthetase (RefSeq) 0.76 Shewana3_0005 trmE tRNA modification GTPase TrmE (RefSeq) 0.35 67
Shewanella amazonensis SB2B 0.73 Sama_0574 glutathione synthetase (RefSeq) 0.76 Sama_0008 trmE tRNA modification GTPase TrmE (RefSeq) — —
Shewanella oneidensis MR-1 0.72 SO0831 gshB glutathione synthetase (NCBI ptt file) 0.76 SO0003 trmE tRNA modification GTPase TrmE (NCBI ptt file) low > 76
Pseudomonas syringae pv. syringae B728a ΔmexB 0.67 Psyr_0487 glutathione synthase 0.66 Psyr_5133 tRNA modification GTPase trmE low > 86
Pseudomonas syringae pv. syringae B728a 0.67 Psyr_0487 glutathione synthase 0.66 Psyr_5133 tRNA modification GTPase trmE low > 86
Pseudomonas sp. S08-1 0.66 OH686_10915 glutathione synthase 0.64 OH686_12655 tRNA modification GTPase TrmE — —
Pseudomonas fluorescens SBW25-INTG 0.66 PFLU_RS28320 glutathione synthase 0.66 PFLU_RS30195 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Pseudomonas fluorescens SBW25 0.66 PFLU_RS28320 glutathione synthase 0.66 PFLU_RS30195 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 109
Pseudomonas simiae WCS417 0.66 PS417_26675 glutathione synthetase 0.66 PS417_28540 tRNA modification GTPase MnmE — —
Pseudomonas fluorescens FW300-N2C3 0.66 AO356_13475 glutathione synthetase 0.64 AO356_11660 tRNA modification GTPase MnmE — —
Pseudomonas fluorescens FW300-N1B4 0.65 Pf1N1B4_2352 Glutathione synthetase (EC 6.3.2.3) 0.65 Pf1N1B4_1933 GTPase and tRNA-U34 5-formylation enzyme TrmE — —
Pseudomonas putida KT2440 0.65 PP_4993 Glutathione synthetase 0.65 PP_0005 GTPase — —
Pseudomonas fluorescens FW300-N2E2 0.65 Pf6N2E2_4612 Glutathione synthetase (EC 6.3.2.3) 0.64 Pf6N2E2_4202 GTPase and tRNA-U34 5-formylation enzyme TrmE — —
Pseudomonas fluorescens FW300-N2E3 0.65 AO353_08110 glutathione synthetase 0.65 AO353_10455 tRNA modification GTPase MnmE low > 101
Pseudomonas fluorescens GW456-L13 0.65 PfGW456L13_1021 Glutathione synthetase (EC 6.3.2.3) 0.64 PfGW456L13_670 GTPase and tRNA-U34 5-formylation enzyme TrmE — —
Pseudomonas sp. RS175 0.65 PFR28_04232 Glutathione synthetase 0.64 PFR28_04588 tRNA modification GTPase MnmE — —
Marinobacter adhaerens HP15 0.64 HP15_3512 glutathione synthetase 0.68 HP15_3698 tRNA modification GTPase TrmE — —
Pseudomonas stutzeri RCH2 0.62 Psest_0296 glutathione synthetase, prokaryotic 0.65 Psest_4373 tRNA modification GTPase TrmE — —
Alteromonas macleodii MIT1002 0.61 MIT1002_03055 Glutathione synthetase 0.69 MIT1002_04128 tRNA modification GTPase MnmE — —
Kangiella aquimarina DSM 16071 0.58 B158DRAFT_0189 glutathione synthase (EC 6.3.2.3) 0.66 B158DRAFT_0373 tRNA modification GTPase TrmE — —
Lysobacter sp. OAE881 0.56 ABIE51_RS05210 glutathione synthase 0.40 ABIE51_RS00735 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Xanthomonas campestris pv. campestris strain 8004 0.56 Xcc-8004.1501.1 Glutathione synthetase (EC 6.3.2.3) 0.40 Xcc-8004.5407.1 GTPase and tRNA-U34 5-formylation enzyme TrmE — —
Acinetobacter radioresistens SK82 0.55 MPMX26_02936 Glutathione synthetase 0.50 MPMX26_03070 tRNA modification GTPase MnmE low > 36
Rhodanobacter sp. FW510-T8 0.54 OKGIIK_11075 gshB glutathione synthase 0.47 OKGIIK_15285 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 52
Dyella japonica UNC79MFTsu3.2 0.53 ABZR86_RS10370 glutathione synthase 0.45 ABZR86_RS15115 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Rhodanobacter denitrificans MT42 0.53 LRK55_RS03970 glutathione synthase 0.46 LRK55_RS08270 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS04200 glutathione synthase 0.46 LRK54_RS08505 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Paraburkholderia graminis OAS925 0.48 ABIE53_000657 glutathione synthase 0.50 ABIE53_000332 tRNA modification GTPase — —
Ralstonia solanacearum UW163 0.48 UW163_RS02720 glutathione synthase 0.50 UW163_RS04170 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS10860 glutathione synthase 0.50 RALBFv3_RS09410 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.47 GFF2650 Glutathione synthetase (EC 6.3.2.3) 0.52 GFF2437 GTPase and tRNA-U34 5-formylation enzyme TrmE — —
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS00435 glutathione synthetase 0.48 HSERO_RS21670 tRNA modification GTPase TrmE — —
Ralstonia solanacearum GMI1000 0.47 RS_RS01700 glutathione synthetase 0.50 RS_RS00020 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Ralstonia solanacearum PSI07 0.47 RPSI07_RS22450 glutathione synthase 0.50 RPSI07_RS23950 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Acidovorax sp. GW101-3H11 0.47 Ac3H11_711 Glutathione synthetase (EC 6.3.2.3) 0.53 Ac3H11_4264 GTPase and tRNA-U34 5-formylation enzyme TrmE 0.49 42
Paraburkholderia bryophila 376MFSha3.1 0.47 H281DRAFT_02010 glutathione synthase 0.50 H281DRAFT_02320 tRNA modification GTPase trmE — —
Ralstonia sp. UNC404CL21Col 0.47 ABZR87_RS06710 glutathione synthase 0.50 ABZR87_RS05350 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 80
Dechlorosoma suillum PS 0.46 Dsui_0746 glutathione synthetase 0.48 Dsui_0837 tRNA modification GTPase TrmE low > 51
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS02560 glutathione synthetase 0.50 BPHYT_RS19830 tRNA modification GTPase TrmE — —
Variovorax sp. OAS795 0.46 ABID97_RS04630 glutathione synthase 0.50 ABID97_RS02655 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Cupriavidus basilensis FW507-4G11 0.45 RR42_RS01780 glutathione synthetase 0.49 RR42_RS20805 tRNA modification GTPase TrmE — —
Castellaniella sp019104865 MT123 0.45 ABCV34_RS04795 glutathione synthase 0.47 ABCV34_RS11895 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS01415 glutathione synthase 0.50 QEN71_RS29655 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Variovorax sp. SCN45 0.45 GFF6322 Glutathione synthetase (EC 6.3.2.3) 0.50 GFF3275 tRNA-5-carboxymethylaminomethyl-2-thiouridine(34) synthesis protein MnmE — —
Magnetospirillum magneticum AMB-1 0.41 AMB_RS22800 glutathione synthase 0.30 AMB_RS00005 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Rhodospirillum rubrum S1H 0.40 Rru_A3690 Glutathione synthetase (NCBI) 0.27 Rru_A3624 tRNA modification GTPase TrmE (NCBI) — —
Azospirillum sp. SherDot2 0.40 MPMX19_02474 Glutathione synthetase 0.26 MPMX19_02568 tRNA modification GTPase MnmE — —
Azospirillum brasilense Sp245 0.40 AZOBR_RS02170 glutathione synthetase 0.30 AZOBR_RS01805 tRNA modification GTPase TrmE low > 97
Sinorhizobium meliloti 1021 0.39 SMc00419 glutathione synthetase 0.30 SMc02797 tRNA modification GTPase TrmE — —
Agrobacterium fabrum C58 0.38 Atu0310 glutathione synthetase 0.28 Atu2832 tRNA modification GTPase — —
Rhizobium sp. OAE497 0.38 ABIE40_RS01405 glutathione synthase 0.29 ABIE40_RS19220 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 107
Brevundimonas sp. GW460-12-10-14-LB2 0.38 A4249_RS14140 glutathione synthase 0.28 A4249_RS13700 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Synechococcus elongatus PCC 7942 0.38 Synpcc7942_2324 gshB glutathione synthetase 0.27 Synpcc7942_1582 trmE tRNA modification GTPase TrmE — —
Phaeobacter inhibens DSM 17395 0.37 PGA1_c26710 glutathione synthetase GshB 0.28 PGA1_c35110 tRNA modification GTPase MnmE — —
Sphingomonas koreensis DSMZ 15582 0.36 Ga0059261_2757 glutathione synthase (EC 6.3.2.3) 0.24 Ga0059261_2204 tRNA modification GTPase trmE — —
Rhodopseudomonas palustris CGA009 0.36 TX73_001670 glutathione synthase 0.31 TX73_001535 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Bosea sp. OAE506 0.35 ABIE41_RS03330 glutathione synthase 0.30 ABIE41_RS04680 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Dinoroseobacter shibae DFL-12 0.35 Dshi_2829 glutathione synthetase (RefSeq) 0.31 Dshi_3454 tRNA modification GTPase TrmE (RefSeq) — —
Caulobacter crescentus NA1000 Δfur 0.35 CCNA_00140 glutathione synthetase 0.30 CCNA_03872 tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase — —
Caulobacter crescentus NA1000 0.35 CCNA_00140 glutathione synthetase 0.30 CCNA_03872 tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.22 CA264_17395 glutathione synthetase 0.30 CA264_06625 tRNA modification GTPase — —

Not shown: 0 genomes with orthologs for b2947 only; 12 genomes with orthologs for b3706 only