Conservation of cofitness between b2838 and b3281 in Escherichia coli BW25113

88 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) 1.0 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.93 8
Escherichia coli BL21 1.00 ECD_02686 diaminopimelate decarboxylase, PLP-binding 1.00 ECD_03132 dehydroshikimate reductase, NAD(P)-binding low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00891 Diaminopimelate decarboxylase 1.00 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) low > 73
Escherichia coli ECOR38 1.00 HEPCGN_19565 lysA diaminopimelate decarboxylase 0.97 HEPCGN_16385 aroE shikimate dehydrogenase low > 85
Escherichia coli ECOR27 1.00 NOLOHH_11830 lysA diaminopimelate decarboxylase 0.99 NOLOHH_09355 aroE shikimate dehydrogenase low > 57
Escherichia coli ECRC99 1.00 KEDOAH_08185 lysA diaminopimelate decarboxylase 0.98 KEDOAH_10585 aroE shikimate dehydrogenase — —
Escherichia coli ECRC62 1.00 BNILDI_10310 lysA diaminopimelate decarboxylase 0.99 BNILDI_02165 aroE shikimate dehydrogenase — —
Escherichia fergusonii Becca 1.00 EFB2_01045 Diaminopimelate decarboxylase 0.96 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.59 52
Escherichia coli Nissle 1917 1.00 ECOLIN_RS15930 diaminopimelate decarboxylase 0.97 ECOLIN_RS18840 shikimate dehydrogenase low > 52
Escherichia coli ECRC101 0.99 MCAODC_10470 lysA diaminopimelate decarboxylase 0.98 MCAODC_08085 aroE shikimate dehydrogenase — —
Escherichia coli ECRC102 0.99 NIAGMN_17715 lysA diaminopimelate decarboxylase 0.98 NIAGMN_15325 aroE shikimate dehydrogenase — —
Escherichia coli ECRC101 0.99 OKFHMN_19945 lysA diaminopimelate decarboxylase 0.98 OKFHMN_17565 aroE shikimate dehydrogenase — —
Escherichia coli ECRC98 0.99 JDDGAC_23610 lysA diaminopimelate decarboxylase 0.98 JDDGAC_21185 aroE shikimate dehydrogenase — —
Enterobacter sp. TBS_079 0.90 MPMX20_03705 Diaminopimelate decarboxylase 0.82 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.72 53
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.88 GFF1323 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.87 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 78
Enterobacter asburiae PDN3 0.88 EX28DRAFT_2916 diaminopimelate decarboxylase 0.81 EX28DRAFT_0046 shikimate dehydrogenase low > 76
Klebsiella michiganensis M5al 0.88 BWI76_RS23360 diaminopimelate decarboxylase 0.81 BWI76_RS25645 shikimate dehydrogenase 0.71 61
Serratia liquefaciens MT49 0.78 IAI46_20520 diaminopimelate decarboxylase 0.66 IAI46_23240 shikimate dehydrogenase 0.52 61
Pectobacterium carotovorum WPP14 0.77 HER17_RS03710 diaminopimelate decarboxylase 0.62 HER17_RS02250 shikimate dehydrogenase 0.92 34
Erwinia tracheiphila SCR3 0.76 LU632_RS06040 lysA diaminopimelate decarboxylase 0.64 LU632_RS22445 aroE shikimate dehydrogenase low > 74
Dickeya dadantii 3937 0.75 DDA3937_RS17425 diaminopimelate decarboxylase 0.61 DDA3937_RS19100 shikimate dehydrogenase — —
Rahnella sp. WP5 0.75 EX31_RS13275 diaminopimelate decarboxylase 0.62 EX31_RS15950 shikimate dehydrogenase — —
Dickeya dianthicola ME23 0.75 DZA65_RS18550 diaminopimelate decarboxylase 0.60 DZA65_RS20315 shikimate dehydrogenase — —
Pantoea sp. MT58 0.75 IAI47_03860 diaminopimelate decarboxylase 0.66 IAI47_02315 shikimate dehydrogenase — —
Dickeya dianthicola 67-19 0.74 HGI48_RS17485 diaminopimelate decarboxylase 0.61 HGI48_RS19190 shikimate dehydrogenase — —
Acidovorax sp. GW101-3H11 0.65 Ac3H11_3862 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.32 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS35090 diaminopimelate decarboxylase 0.40 BPHYT_RS16975 shikimate 5-dehydrogenase low > 109
Pseudomonas putida KT2440 0.57 PP_2077 diaminopimelate decarboxylase 0.45 PP_0074 shikimate 5-dehydrogenase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.26 Echvi_1295 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.15 Echvi_1145 Shikimate 5-dehydrogenase — —
Lysobacter sp. OAE881 0.26 ABIE51_RS13675 diaminopimelate decarboxylase 0.31 ABIE51_RS01815 shikimate dehydrogenase low > 62
Rhodanobacter denitrificans MT42 0.25 LRK55_RS11215 diaminopimelate decarboxylase 0.33 LRK55_RS08360 shikimate dehydrogenase low > 63
Rhodanobacter denitrificans FW104-10B01 0.25 LRK54_RS11485 diaminopimelate decarboxylase 0.33 LRK54_RS08595 shikimate dehydrogenase low > 59
Dyella japonica UNC79MFTsu3.2 0.24 ABZR86_RS12130 diaminopimelate decarboxylase 0.33 ABZR86_RS14985 shikimate dehydrogenase low > 74
Rhodanobacter sp. FW510-T8 0.24 OKGIIK_12375 lysA diaminopimelate decarboxylase 0.32 OKGIIK_15365 aroE shikimate dehydrogenase low > 52
Brevundimonas sp. GW460-12-10-14-LB2 0.23 A4249_RS12545 diaminopimelate decarboxylase 0.18 A4249_RS13660 shikimate dehydrogenase — —
Caulobacter crescentus NA1000 0.23 CCNA_02296 diaminopimelate decarboxylase 0.19 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) — —
Caulobacter crescentus NA1000 Δfur 0.23 CCNA_02296 diaminopimelate decarboxylase 0.19 CCNA_00003 shikimate 5-dehydrogenase — —
Bosea sp. OAE506 0.23 ABIE41_RS08740 diaminopimelate decarboxylase 0.19 ABIE41_RS04650 shikimate dehydrogenase — —
Rhodopseudomonas palustris CGA009 0.22 TX73_024635 diaminopimelate decarboxylase 0.22 TX73_022410 shikimate dehydrogenase — —
Sphingomonas koreensis DSMZ 15582 0.22 Ga0059261_2051 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.17 Ga0059261_2194 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.91 48
Phaeobacter inhibens DSM 17395 0.22 PGA1_c03470 diaminopimelate decarboxylase LysA 0.23 PGA1_c35150 shikimate dehydrogenase AroE — —
Azospirillum sp. SherDot2 0.22 MPMX19_05819 Diaminopimelate decarboxylase 0.21 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) — —
Rhodospirillum rubrum S1H 0.22 Rru_A0396 Diaminopimelate decarboxylase (NCBI) 0.22 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) — —
Pseudomonas fluorescens FW300-N2E3 0.22 AO353_09035 diaminopimelate decarboxylase 0.49 AO353_10670 shikimate dehydrogenase — —
Pseudomonas sp. RS175 0.21 PFR28_04375 Diaminopimelate decarboxylase 0.50 PFR28_04655 Shikimate dehydrogenase (NADP(+)) — —
Pseudomonas fluorescens GW456-L13 0.21 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.48 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.78 49
Pseudomonas syringae pv. syringae B728a 0.21 Psyr_0182 diaminopimelate decarboxylase 0.49 Psyr_0025 shikimate dehydrogenase — —
Pseudomonas fluorescens FW300-N1B4 0.21 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.50 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.21 Psyr_0182 diaminopimelate decarboxylase 0.49 Psyr_0025 shikimate dehydrogenase — —
Dechlorosoma suillum PS 0.21 Dsui_1182 diaminopimelate decarboxylase 0.48 Dsui_0443 shikimate 5-dehydrogenase — —
Dinoroseobacter shibae DFL-12 0.21 Dshi_3059 diaminopimelate decarboxylase (RefSeq) 0.25 Dshi_3450 shikimate 5-dehydrogenase (RefSeq) — —
Pseudomonas simiae WCS417 0.21 PS417_27580 diaminopimelate decarboxylase 0.48 PS417_00125 shikimate dehydrogenase — —
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS29265 diaminopimelate decarboxylase 0.47 PFLU_RS00120 shikimate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E2 0.21 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.49 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Pseudomonas fluorescens SBW25 0.21 PFLU_RS29265 diaminopimelate decarboxylase 0.47 PFLU_RS00120 shikimate dehydrogenase — —
Cupriavidus basilensis FW507-4G11 0.20 RR42_RS19050 diaminopimelate decarboxylase 0.37 RR42_RS17645 shikimate dehydrogenase — —
Pseudomonas fluorescens FW300-N2C3 0.20 AO356_12740 diaminopimelate decarboxylase 0.49 AO356_11315 shikimate dehydrogenase — —
Pseudomonas stutzeri RCH2 0.20 Psest_3764 diaminopimelate decarboxylase 0.47 Psest_0029 shikimate 5-dehydrogenase — —
Ralstonia sp. UNC404CL21Col 0.20 ABZR87_RS02640 diaminopimelate decarboxylase 0.39 ABZR87_RS01605 shikimate dehydrogenase 0.63 38
Pseudomonas sp. S08-1 0.20 OH686_13800 diaminopimelate decarboxylase 0.48 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.79 70
Ralstonia solanacearum PSI07 0.20 RPSI07_RS10250 diaminopimelate decarboxylase 0.37 RPSI07_RS11300 shikimate dehydrogenase — —
Agrobacterium fabrum C58 0.20 Atu3601 diaminopimelate decarboxylase 0.24 Atu0003 shikimate 5-dehydrogenase — —
Shewanella amazonensis SB2B 0.20 Sama_3250 diaminopimelate decarboxylase (RefSeq) 0.43 Sama_0052 shikimate dehydrogenase (RefSeq) low > 62
Ralstonia solanacearum IBSBF1503 0.20 RALBFv3_RS06990 diaminopimelate decarboxylase 0.37 RALBFv3_RS05945 shikimate dehydrogenase — —
Ralstonia solanacearum GMI1000 0.20 RS_RS14930 diaminopimelate decarboxylase 0.37 RS_RS13890 shikimate dehydrogenase — —
Ralstonia solanacearum UW163 0.20 UW163_RS06625 diaminopimelate decarboxylase 0.37 UW163_RS07680 shikimate dehydrogenase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.19 GFF1341 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.41 GFF5226 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 90
Marinobacter adhaerens HP15 0.19 HP15_247 diaminopimelate decarboxylase 0.41 HP15_3750 shikimate dehydrogenase — —
Shewanella sp. ANA-3 0.19 Shewana3_0390 diaminopimelate decarboxylase (RefSeq) 0.48 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.93 35
Sinorhizobium meliloti 1021 0.19 SMc00723 diaminopimelate DAP decarboxylase 0.23 SMc02791 shikimate 5-dehydrogenase — —
Paraburkholderia graminis OAS925 0.19 ABIE53_003749 diaminopimelate decarboxylase 0.41 ABIE53_003560 shikimate dehydrogenase — —
Paraburkholderia sabiae LMG 24235 0.19 QEN71_RS28080 diaminopimelate decarboxylase 0.43 QEN71_RS27130 shikimate dehydrogenase 0.70 71
Herbaspirillum seropedicae SmR1 0.19 HSERO_RS00950 diaminopimelate decarboxylase 0.44 HSERO_RS01990 shikimate 5-dehydrogenase — —
Shewanella oneidensis MR-1 0.19 SO4309 lysA diaminopimelate decarboxylase (NCBI ptt file) 0.48 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.88 64
Acinetobacter radioresistens SK82 0.19 MPMX26_02232 Diaminopimelate decarboxylase 0.40 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.84 15
Vibrio cholerae E7946 ATCC 55056 0.18 CSW01_00635 diaminopimelate decarboxylase 0.49 CSW01_00280 shikimate dehydrogenase low > 62
Shewanella loihica PV-4 0.18 Shew_0322 diaminopimelate decarboxylase (RefSeq) 0.47 Shew_3727 shikimate 5-dehydrogenase (RefSeq) low > 60
Variovorax sp. SCN45 0.18 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.32 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Castellaniella sp019104865 MT123 0.18 ABCV34_RS12685 diaminopimelate decarboxylase 0.39 ABCV34_RS11620 shikimate dehydrogenase — —
Paraburkholderia bryophila 376MFSha3.1 0.18 H281DRAFT_05606 diaminopimelate decarboxylase 0.40 H281DRAFT_01679 shikimate dehydrogenase (EC 1.1.1.25) — —
Bacteroides stercoris CC31F 0.18 HMPREF1181_RS11050 diaminopimelate decarboxylase 0.17 HMPREF1181_RS06320 shikimate dehydrogenase 0.84 55
Pedobacter sp. GW460-11-11-14-LB5 0.18 CA265_RS09650 diaminopimelate decarboxylase 0.16 CA265_RS19745 shikimate dehydrogenase (EC 1.1.1.25) (from data) — —
Variovorax sp. OAS795 0.18 ABID97_RS23305 diaminopimelate decarboxylase 0.29 ABID97_RS06300 shikimate dehydrogenase — —
Bacteroides thetaiotaomicron VPI-5482 0.17 BT1374 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) 0.17 BT4215 shikimate dehydrogenase (EC 1.1.1.25) (from data) — —
Phocaeicola dorei CL03T12C01 0.17 ABI39_RS19950 diaminopimelate decarboxylase 0.16 ABI39_RS12665 shikimate dehydrogenase 0.70 5
Phocaeicola vulgatus CL09T03C04 0.17 HMPREF1058_RS06195 diaminopimelate decarboxylase 0.16 HMPREF1058_RS16750 shikimate dehydrogenase 0.51 47
Bacteroides ovatus ATCC 8483 0.17 BACOVA_00215 diaminopimelate decarboxylase 0.17 BACOVA_05065 putative shikimate dehydrogenase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.16 ABZR88_RS10180 diaminopimelate decarboxylase 0.14 ABZR88_RS20055 shikimate dehydrogenase — —
Alteromonas macleodii MIT1002 0.16 MIT1002_00160 Diaminopimelate decarboxylase 0.31 MIT1002_00029 Shikimate dehydrogenase — —

Not shown: 11 genomes with orthologs for b2838 only; 2 genomes with orthologs for b3281 only